RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 CDC42BPBQ9Y5S2 1711 aa25.04■■□□□ 1.6
HDAC6-218ENST00000470942 PREX2Q70Z35 1606 aa25.01■■□□□ 1.59
HDAC6-218ENST00000470942 MTUS2Q5JR59 1369 aa25■■□□□ 1.59
HDAC6-218ENST00000470942 CDC42BPAQ5VT25 1732 aa24.99■■□□□ 1.59
HDAC6-218ENST00000470942 POGZQ7Z3K3 1410 aa24.97■■□□□ 1.59
HDAC6-218ENST00000470942 ZMYM4Q5VZL5 1548 aa24.96■■□□□ 1.59
HDAC6-218ENST00000470942 ARHGEF40Q8TER5 1519 aa24.96■■□□□ 1.59
HDAC6-218ENST00000470942 ARID4BQ4LE39 1312 aaPredicted RBP24.95■■□□□ 1.58
HDAC6-218ENST00000470942 VPS8Q8N3P4 1428 aa24.94■■□□□ 1.58
HDAC6-218ENST00000470942 ZFYVE16Q7Z3T8 1539 aa24.93■■□□□ 1.58
HDAC6-218ENST00000470942 MAGI2Q86UL8 1455 aa24.92■■□□□ 1.58
HDAC6-218ENST00000470942 ZNF777Q9ULD5 760 aaPredicted RBP24.92■■□□□ 1.58
HDAC6-218ENST00000470942 EHBP1L1Q8N3D4 1523 aa24.91■■□□□ 1.58
HDAC6-218ENST00000470942 YEATS2Q9ULM3 1422 aa24.9■■□□□ 1.58
HDAC6-218ENST00000470942 GPATCH8Q9UKJ3 1502 aaKnown RBP24.9■■□□□ 1.58
HDAC6-218ENST00000470942 CCNB3Q8WWL7 1395 aa24.9■■□□□ 1.58
HDAC6-218ENST00000470942 ZNF518AQ6AHZ1 1483 aa24.89■■□□□ 1.58
HDAC6-218ENST00000470942 AFAP1Q8N556 730 aa24.89■■□□□ 1.58
HDAC6-218ENST00000470942 MYT1LQ9UL68 1186 aa24.89■■□□□ 1.58
HDAC6-218ENST00000470942 ABCC1P33527 1531 aa24.87■■□□□ 1.57
HDAC6-218ENST00000470942 ITSN2Q9NZM3 1697 aa24.87■■□□□ 1.57
HDAC6-218ENST00000470942 TIAM1Q13009 1591 aa24.86■■□□□ 1.57
HDAC6-218ENST00000470942 CFDP1Q9UEE9 299 aaPredicted RBP24.85■■□□□ 1.57
HDAC6-218ENST00000470942 BCORL1Q5H9F3 1711 aa24.84■■□□□ 1.57
HDAC6-218ENST00000470942 ARHGEF12Q9NZN5 1544 aa24.84■■□□□ 1.57
HDAC6-218ENST00000470942 ADAMTSL3P82987 1691 aa24.83■■□□□ 1.57
HDAC6-218ENST00000470942 KDM5CP41229 1560 aa24.83■■□□□ 1.57
HDAC6-218ENST00000470942 SAMD9LQ8IVG5 1584 aa24.83■■□□□ 1.57
HDAC6-218ENST00000470942 TRAPPC8Q9Y2L5 1435 aa24.82■■□□□ 1.56
HDAC6-218ENST00000470942 SUPT6HQ7KZ85 1726 aaKnown RBP24.81■■□□□ 1.56
HDAC6-218ENST00000470942 ATP10AO60312 1499 aa24.81■■□□□ 1.56
HDAC6-218ENST00000470942 HECW2Q9P2P5 1572 aa24.8■■□□□ 1.56
HDAC6-218ENST00000470942 SIGLEC1Q9BZZ2 1709 aa24.79■■□□□ 1.56
HDAC6-218ENST00000470942 HNRNPMP52272 730 aaKnown RBP eCLIP24.78■■□□□ 1.56
HDAC6-218ENST00000470942 SYCP2Q9BX26 1530 aa24.77■■□□□ 1.56
HDAC6-218ENST00000470942 C9orf84Q5VXU9 1444 aa24.77■■□□□ 1.56
HDAC6-218ENST00000470942 NCOA2Q15596 1464 aa24.77■■□□□ 1.56
HDAC6-218ENST00000470942 MADDQ8WXG6 1647 aa24.76■■□□□ 1.55
HDAC6-218ENST00000470942 MLECQ14165 292 aa24.76■■□□□ 1.55
HDAC6-218ENST00000470942 PLEKHH2Q8IVE3 1493 aa24.76■■□□□ 1.55
HDAC6-218ENST00000470942 MLH3Q9UHC1 1453 aa24.76■■□□□ 1.55
HDAC6-218ENST00000470942 LRRC9Q6ZRR7 1453 aa24.75■■□□□ 1.55
HDAC6-218ENST00000470942 DIP2CQ9Y2E4 1556 aa24.73■■□□□ 1.55
HDAC6-218ENST00000470942 KIAA1107Q9UPP5 1409 aa24.73■■□□□ 1.55
HDAC6-218ENST00000470942 APLP2Q06481 763 aa24.73■■□□□ 1.55
HDAC6-218ENST00000470942 MAP3K1Q13233 1512 aa24.72■■□□□ 1.55
HDAC6-218ENST00000470942 PTPRMP28827 1452 aa24.72■■□□□ 1.55
HDAC6-218ENST00000470942 ABCA6Q8N139 1617 aa24.72■■□□□ 1.55
HDAC6-218ENST00000470942 ZNF644Q9H582 1327 aaPredicted RBP24.71■■□□□ 1.55
HDAC6-218ENST00000470942 KIDINS220Q9ULH0 1771 aa24.71■■□□□ 1.55
HDAC6-218ENST00000470942 RIMS1Q86UR5 1692 aaKnown RBP24.71■■□□□ 1.55
HDAC6-218ENST00000470942 KANK4Q5T7N3 995 aaPredicted RBP24.7■■□□□ 1.54
HDAC6-218ENST00000470942 SPAG9O60271 1321 aaKnown RBP24.69■■□□□ 1.54
HDAC6-218ENST00000470942 FER1L4A9Z1Z3 1794 aa24.66■■□□□ 1.54
HDAC6-218ENST00000470942 PLPPR3Q6T4P5 718 aa24.65■■□□□ 1.54
HDAC6-218ENST00000470942 REREQ9P2R6 1566 aa24.64■■□□□ 1.54
HDAC6-218ENST00000470942 ATP7AQ04656 1500 aa24.62■■□□□ 1.53
HDAC6-218ENST00000470942 CAMSAP2Q08AD1 1489 aa24.61■■□□□ 1.53
HDAC6-218ENST00000470942 MBD5Q9P267 1494 aa24.6■■□□□ 1.53
HDAC6-218ENST00000470942 INO80Q9ULG1 1556 aaPredicted RBP24.59■■□□□ 1.53
HDAC6-218ENST00000470942 AGLP35573 1532 aa24.57■■□□□ 1.52
HDAC6-218ENST00000470942 RSPH4AQ5TD94 716 aa24.54■■□□□ 1.52
HDAC6-218ENST00000470942 MYOM3Q5VTT5 1437 aa24.53■■□□□ 1.52
HDAC6-218ENST00000470942 CCDC141Q6ZP82 1450 aa24.53■■□□□ 1.52
HDAC6-218ENST00000470942 ESF1Q9H501 851 aaKnown RBP24.53■■□□□ 1.52
HDAC6-218ENST00000470942 ADGBQ8N7X0 1667 aa24.52■■□□□ 1.52
HDAC6-218ENST00000470942 A2MP01023 1474 aa24.51■■□□□ 1.51
HDAC6-218ENST00000470942 RTEL1-TNFRSF6BF6WH68 1400 aa24.51■■□□□ 1.51
HDAC6-218ENST00000470942 MIA2Q96PC5 1412 aa24.5■■□□□ 1.51
HDAC6-218ENST00000470942 ARHGEF5Q12774 1597 aa24.5■■□□□ 1.51
HDAC6-218ENST00000470942 TSPY4P0CV99 314 aa24.49■■□□□ 1.51
HDAC6-218ENST00000470942 TSPY10P0CW01 314 aa24.49■■□□□ 1.51
HDAC6-218ENST00000470942 CEBPAP49715 358 aaPredicted RBP24.48■■□□□ 1.51
HDAC6-218ENST00000470942 PLXNC1O60486 1568 aa24.46■■□□□ 1.51
HDAC6-218ENST00000470942 GGT6Q6P531 493 aa24.42■■□□□ 1.5
HDAC6-218ENST00000470942 PTPN23Q9H3S7 1636 aa24.41■■□□□ 1.5
HDAC6-218ENST00000470942 DHX29Q7Z478 1369 aaKnown RBP24.41■■□□□ 1.5
HDAC6-218ENST00000470942 C3P01024 1663 aa24.4■■□□□ 1.5
HDAC6-218ENST00000470942 LMTK3Q96Q04 1460 aa24.39■■□□□ 1.5
HDAC6-218ENST00000470942 CNTLNQ9NXG0 1405 aa24.39■■□□□ 1.5
HDAC6-218ENST00000470942 FGD6Q6ZV73 1430 aa24.36■■□□□ 1.49
HDAC6-218ENST00000470942 MAST1Q9Y2H9 1570 aa24.36■■□□□ 1.49
HDAC6-218ENST00000470942 CLTCQ00610 1675 aaKnown RBP24.36■■□□□ 1.49
HDAC6-218ENST00000470942 SETD1BQ9UPS6 1966 aaKnown RBP24.36■■□□□ 1.49
HDAC6-218ENST00000470942 PREX1Q8TCU6 1659 aa24.35■■□□□ 1.49
HDAC6-218ENST00000470942 KIF3BO15066 747 aa24.35■■□□□ 1.49
HDAC6-218ENST00000470942 MROH2AA6NES4 1674 aa24.34■■□□□ 1.49
HDAC6-218ENST00000470942 HSPA2P54652 639 aa24.34■■□□□ 1.49
HDAC6-218ENST00000470942 ZMYM3Q14202 1370 aa24.31■■□□□ 1.48
HDAC6-218ENST00000470942 PPP6R1Q9UPN7 881 aa24.31■■□□□ 1.48
HDAC6-218ENST00000470942 TCOF1Q13428 1488 aaKnown RBP24.31■■□□□ 1.48
HDAC6-218ENST00000470942 CROCC2H7BZ55 1655 aa24.3■■□□□ 1.48
HDAC6-218ENST00000470942 ABCC5O15440 1437 aa24.29■■□□□ 1.48
HDAC6-218ENST00000470942 UHRF1BP1Q6BDS2 1440 aa24.28■■□□□ 1.48
HDAC6-218ENST00000470942 DNMT1P26358 1616 aaKnown RBP24.28■■□□□ 1.48
HDAC6-218ENST00000470942 DAPK1P53355 1430 aa24.27■■□□□ 1.48
HDAC6-218ENST00000470942 FAM50AQ14320 339 aaKnown RBP24.26■■□□□ 1.47
HDAC6-218ENST00000470942 SHANK2Q9UPX8 1470 aa24.26■■□□□ 1.47
HDAC6-218ENST00000470942 PPARGC1BQ86YN6 1023 aaKnown RBP24.25■■□□□ 1.47
HDAC6-218ENST00000470942 CHIC2Q9UKJ5 165 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms