RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MADDQ8WXG6 1647 aa14.33□□□□□ -0.11
HDAC3-205ENST00000469550 FMN1Q68DA7 1419 aa14.33□□□□□ -0.12
HDAC3-205ENST00000469550 ARHGAP35Q9NRY4 1499 aa14.32□□□□□ -0.12
HDAC3-205ENST00000469550 RANGAP1P46060 587 aaPredicted RBP14.32□□□□□ -0.12
HDAC3-205ENST00000469550 MAGI2Q86UL8 1455 aa14.31□□□□□ -0.12
HDAC3-205ENST00000469550 ILDR1Q86SU0 546 aaPredicted RBP14.3□□□□□ -0.12
HDAC3-205ENST00000469550 ZFYVE16Q7Z3T8 1539 aa14.3□□□□□ -0.12
HDAC3-205ENST00000469550 PLCH2O75038 1416 aa14.3□□□□□ -0.12
HDAC3-205ENST00000469550 MYO5CQ9NQX4 1742 aa14.3□□□□□ -0.12
HDAC3-205ENST00000469550 ZNF316A6NFI3 1004 aaPredicted RBP14.29□□□□□ -0.12
HDAC3-205ENST00000469550 CEP162Q5TB80 1403 aa14.28□□□□□ -0.12
HDAC3-205ENST00000469550 POGZQ7Z3K3 1410 aa14.27□□□□□ -0.12
HDAC3-205ENST00000469550 SIGLEC1Q9BZZ2 1709 aa14.27□□□□□ -0.12
HDAC3-205ENST00000469550 RIMS1Q86UR5 1692 aaKnown RBP14.27□□□□□ -0.12
HDAC3-205ENST00000469550 PCF11O94913 1555 aaKnown RBP14.26□□□□□ -0.13
HDAC3-205ENST00000469550 KIF14Q15058 1648 aa14.26□□□□□ -0.13
HDAC3-205ENST00000469550 LRRIQ1Q96JM4 1722 aa14.26□□□□□ -0.13
HDAC3-205ENST00000469550 YEATS2Q9ULM3 1422 aa14.24□□□□□ -0.13
HDAC3-205ENST00000469550 UBTFP17480 764 aaKnown RBP14.24□□□□□ -0.13
HDAC3-205ENST00000469550 TROQ12816 1431 aaPredicted RBP14.24□□□□□ -0.13
HDAC3-205ENST00000469550 LMTK3Q96Q04 1460 aa14.24□□□□□ -0.13
HDAC3-205ENST00000469550 SCAPERQ9BY12 1400 aa14.23□□□□□ -0.13
HDAC3-205ENST00000469550 ARID4BQ4LE39 1312 aaPredicted RBP14.23□□□□□ -0.13
HDAC3-205ENST00000469550 CDK11AQ9UQ88 783 aaPredicted RBP14.22□□□□□ -0.13
HDAC3-205ENST00000469550 KDM5CP41229 1560 aa14.21□□□□□ -0.13
HDAC3-205ENST00000469550 FER1L4A9Z1Z3 1794 aa14.21□□□□□ -0.13
HDAC3-205ENST00000469550 CLIP1P30622 1438 aa14.2□□□□□ -0.14
HDAC3-205ENST00000469550 EFCAB2Q5VUJ9 269 aa14.2□□□□□ -0.14
HDAC3-205ENST00000469550 ARHGEF12Q9NZN5 1544 aa14.2□□□□□ -0.14
HDAC3-205ENST00000469550 C9orf84Q5VXU9 1444 aa14.19□□□□□ -0.14
HDAC3-205ENST00000469550 ATP10AO60312 1499 aa14.19□□□□□ -0.14
HDAC3-205ENST00000469550 CCDC18Q5T9S5 1454 aa14.19□□□□□ -0.14
HDAC3-205ENST00000469550 ZNF518AQ6AHZ1 1483 aa14.19□□□□□ -0.14
HDAC3-205ENST00000469550 REREQ9P2R6 1566 aa14.18□□□□□ -0.14
HDAC3-205ENST00000469550 CDC42BPBQ9Y5S2 1711 aa14.18□□□□□ -0.14
HDAC3-205ENST00000469550 CASKIN1Q8WXD9 1431 aa14.18□□□□□ -0.14
HDAC3-205ENST00000469550 PREX2Q70Z35 1606 aa14.18□□□□□ -0.14
HDAC3-205ENST00000469550 ARHGAP5Q13017 1502 aa14.17□□□□□ -0.14
HDAC3-205ENST00000469550 ITSN2Q9NZM3 1697 aa14.14□□□□□ -0.15
HDAC3-205ENST00000469550 DIP2CQ9Y2E4 1556 aa14.14□□□□□ -0.15
HDAC3-205ENST00000469550 ABCC1P33527 1531 aa14.14□□□□□ -0.15
HDAC3-205ENST00000469550 ATP1B4Q9UN42 357 aaPredicted RBP14.14□□□□□ -0.15
HDAC3-205ENST00000469550 FYCO1Q9BQS8 1478 aa14.14□□□□□ -0.15
HDAC3-205ENST00000469550 MLH3Q9UHC1 1453 aa14.13□□□□□ -0.15
HDAC3-205ENST00000469550 CDC42BPAQ5VT25 1732 aa14.12□□□□□ -0.15
HDAC3-205ENST00000469550 PREX1Q8TCU6 1659 aa14.12□□□□□ -0.15
HDAC3-205ENST00000469550 ABCA6Q8N139 1617 aa14.12□□□□□ -0.15
HDAC3-205ENST00000469550 AGLP35573 1532 aa14.11□□□□□ -0.15
HDAC3-205ENST00000469550 FBXO41Q8TF61 875 aa14.11□□□□□ -0.15
HDAC3-205ENST00000469550 KIDINS220Q9ULH0 1771 aa14.07□□□□□ -0.16
HDAC3-205ENST00000469550 MIER1Q8N108 512 aa14.07□□□□□ -0.16
HDAC3-205ENST00000469550 AFAP1Q8N556 730 aa14.07□□□□□ -0.16
HDAC3-205ENST00000469550 TRAPPC8Q9Y2L5 1435 aa14.06□□□□□ -0.16
HDAC3-205ENST00000469550 MLECQ14165 292 aa14.06□□□□□ -0.16
HDAC3-205ENST00000469550 CLSPNQ9HAW4 1339 aa14.06□□□□□ -0.16
HDAC3-205ENST00000469550 SAMD9LQ8IVG5 1584 aa14.05□□□□□ -0.16
HDAC3-205ENST00000469550 SETD1BQ9UPS6 1966 aaKnown RBP14.04□□□□□ -0.16
HDAC3-205ENST00000469550 HSPA2P54652 639 aa14.03□□□□□ -0.16
HDAC3-205ENST00000469550 C3P01024 1663 aa14.03□□□□□ -0.16
HDAC3-205ENST00000469550 GPATCH8Q9UKJ3 1502 aaKnown RBP14.02□□□□□ -0.16
HDAC3-205ENST00000469550 MROH2AA6NES4 1674 aa14.01□□□□□ -0.17
HDAC3-205ENST00000469550 YTHDC1Q96MU7 727 aaKnown RBP14.01□□□□□ -0.17
HDAC3-205ENST00000469550 KIAA1107Q9UPP5 1409 aa14.01□□□□□ -0.17
HDAC3-205ENST00000469550 PLEKHH2Q8IVE3 1493 aa14.01□□□□□ -0.17
HDAC3-205ENST00000469550 STRCQ7RTU9 1775 aa14□□□□□ -0.17
HDAC3-205ENST00000469550 CNTLNQ9NXG0 1405 aa14□□□□□ -0.17
HDAC3-205ENST00000469550 SYCP2Q9BX26 1530 aa14□□□□□ -0.17
HDAC3-205ENST00000469550 UHRF1BP1Q6BDS2 1440 aa14□□□□□ -0.17
HDAC3-205ENST00000469550 INO80Q9ULG1 1556 aaPredicted RBP14□□□□□ -0.17
HDAC3-205ENST00000469550 PLPPR3Q6T4P5 718 aa13.99□□□□□ -0.17
HDAC3-205ENST00000469550 PLXNC1O60486 1568 aa13.98□□□□□ -0.17
HDAC3-205ENST00000469550 ATP7AQ04656 1500 aa13.97□□□□□ -0.17
HDAC3-205ENST00000469550 CEBPAP49715 358 aaPredicted RBP13.97□□□□□ -0.17
HDAC3-205ENST00000469550 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
HDAC3-205ENST00000469550 MYT1LQ9UL68 1186 aa13.96□□□□□ -0.17
HDAC3-205ENST00000469550 EHBP1L1Q8N3D4 1523 aa13.96□□□□□ -0.18
HDAC3-205ENST00000469550 NPATQ14207 1427 aa13.94□□□□□ -0.18
HDAC3-205ENST00000469550 TIAM1Q13009 1591 aa13.94□□□□□ -0.18
HDAC3-205ENST00000469550 ADGBQ8N7X0 1667 aa13.94□□□□□ -0.18
HDAC3-205ENST00000469550 CCNB3Q8WWL7 1395 aa13.94□□□□□ -0.18
HDAC3-205ENST00000469550 SUPT6HQ7KZ85 1726 aaKnown RBP13.93□□□□□ -0.18
HDAC3-205ENST00000469550 PTPRTO14522 1441 aa13.93□□□□□ -0.18
HDAC3-205ENST00000469550 CERKQ8TCT0 537 aa13.93□□□□□ -0.18
HDAC3-205ENST00000469550 DMRT2Q9Y5R5 561 aa13.93□□□□□ -0.18
HDAC3-205ENST00000469550 SPAG9O60271 1321 aaKnown RBP13.93□□□□□ -0.18
HDAC3-205ENST00000469550 MTUS2Q5JR59 1369 aa13.92□□□□□ -0.18
HDAC3-205ENST00000469550 A2MP01023 1474 aa13.91□□□□□ -0.18
HDAC3-205ENST00000469550 ESF1Q9H501 851 aaKnown RBP13.91□□□□□ -0.18
HDAC3-205ENST00000469550 CFDP1Q9UEE9 299 aaPredicted RBP13.91□□□□□ -0.18
HDAC3-205ENST00000469550 ZNF777Q9ULD5 760 aaPredicted RBP13.91□□□□□ -0.18
HDAC3-205ENST00000469550 ZNF142P52746 1687 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-205ENST00000469550 CLTCQ00610 1675 aaKnown RBP13.9□□□□□ -0.18
HDAC3-205ENST00000469550 MBD5Q9P267 1494 aa13.9□□□□□ -0.19
HDAC3-205ENST00000469550 HNRNPMP52272 730 aaKnown RBP eCLIP13.89□□□□□ -0.19
HDAC3-205ENST00000469550 NCOA1Q15788 1441 aa13.89□□□□□ -0.19
HDAC3-205ENST00000469550 RTEL1-TNFRSF6BF6WH68 1400 aa13.88□□□□□ -0.19
HDAC3-205ENST00000469550 MYO3AQ8NEV4 1616 aa13.87□□□□□ -0.19
HDAC3-205ENST00000469550 ZMYM3Q14202 1370 aa13.87□□□□□ -0.19
HDAC3-205ENST00000469550 APLP2Q06481 763 aa13.87□□□□□ -0.19
HDAC3-205ENST00000469550 FAM135AQ9P2D6 1515 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms