RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 CHGAP10645 457 aaKnown RBP13.68□□□□□ -0.22
NUP50-214ENST00000469163 CARMIL2Q6F5E8 1435 aa13.68□□□□□ -0.22
NUP50-214ENST00000469163 MLECQ14165 292 aa13.67□□□□□ -0.22
NUP50-214ENST00000469163 RBM10P98175 930 aaKnown RBP13.67□□□□□ -0.22
NUP50-214ENST00000469163 RGL3Q3MIN7 710 aa13.67□□□□□ -0.22
NUP50-214ENST00000469163 FMN1Q68DA7 1419 aa13.66□□□□□ -0.22
NUP50-214ENST00000469163 PLB1Q6P1J6 1458 aa13.65□□□□□ -0.22
NUP50-214ENST00000469163 SLC4A1APQ9BWU0 796 aaKnown RBP13.64□□□□□ -0.23
NUP50-214ENST00000469163 CDK13Q14004 1512 aaKnown RBP13.63□□□□□ -0.23
NUP50-214ENST00000469163 ERICH3Q5RHP9 1530 aa13.63□□□□□ -0.23
NUP50-214ENST00000469163 AAMPQ13685 434 aa13.61□□□□□ -0.23
NUP50-214ENST00000469163 GRIN2AQ12879 1464 aa13.61□□□□□ -0.23
NUP50-214ENST00000469163 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
NUP50-214ENST00000469163 CUL7Q14999 1698 aa13.59□□□□□ -0.23
NUP50-214ENST00000469163 ADAMTS12P58397 1594 aa13.59□□□□□ -0.23
NUP50-214ENST00000469163 NOP58Q9Y2X3 529 aaKnown RBP13.57□□□□□ -0.24
NUP50-214ENST00000469163 GGT6Q6P531 493 aa13.56□□□□□ -0.24
NUP50-214ENST00000469163 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
NUP50-214ENST00000469163 AFAP1Q8N556 730 aa13.56□□□□□ -0.24
NUP50-214ENST00000469163 SYNJ2O15056 1496 aa13.56□□□□□ -0.24
NUP50-214ENST00000469163 RSPH6AQ9H0K4 717 aa13.54□□□□□ -0.24
NUP50-214ENST00000469163 ARID4BQ4LE39 1312 aaPredicted RBP13.53□□□□□ -0.24
NUP50-214ENST00000469163 LRRC9Q6ZRR7 1453 aa13.52□□□□□ -0.25
NUP50-214ENST00000469163 NUTM2DQ5VT03 806 aaPredicted RBP13.51□□□□□ -0.25
NUP50-214ENST00000469163 PCF11O94913 1555 aaKnown RBP13.51□□□□□ -0.25
NUP50-214ENST00000469163 FAM69CQ0P6D2 419 aa13.51□□□□□ -0.25
NUP50-214ENST00000469163 KIAA0586Q9BVV6 1533 aa13.51□□□□□ -0.25
NUP50-214ENST00000469163 IQGAP2Q13576 1575 aa13.5□□□□□ -0.25
NUP50-214ENST00000469163 BRPF3Q9ULD4 1205 aa13.49□□□□□ -0.25
NUP50-214ENST00000469163 PAK3O75914 559 aaPredicted RBP13.49□□□□□ -0.25
NUP50-214ENST00000469163 DDX10Q13206 875 aaKnown RBP13.49□□□□□ -0.25
NUP50-214ENST00000469163 CTTNBP2Q8WZ74 1663 aa13.49□□□□□ -0.25
NUP50-214ENST00000469163 TONSLQ96HA7 1378 aa13.48□□□□□ -0.25
NUP50-214ENST00000469163 RAPGEF3O95398 923 aa13.48□□□□□ -0.25
NUP50-214ENST00000469163 CASKIN1Q8WXD9 1431 aa13.48□□□□□ -0.25
NUP50-214ENST00000469163 MAGI1Q96QZ7 1491 aaPredicted RBP13.47□□□□□ -0.25
NUP50-214ENST00000469163 CEP170Q5SW79 1584 aa13.47□□□□□ -0.25
NUP50-214ENST00000469163 NCOA2Q15596 1464 aa13.46□□□□□ -0.25
NUP50-214ENST00000469163 PKD2Q13563 968 aa13.46□□□□□ -0.26
NUP50-214ENST00000469163 CHD1O14646 1710 aa13.45□□□□□ -0.26
NUP50-214ENST00000469163 KIF3BO15066 747 aa13.44□□□□□ -0.26
NUP50-214ENST00000469163 TAF7LQ5H9L4 462 aa13.43□□□□□ -0.26
NUP50-214ENST00000469163 EFCAB2Q5VUJ9 269 aa13.43□□□□□ -0.26
NUP50-214ENST00000469163 SETD5Q9C0A6 1442 aa13.42□□□□□ -0.26
NUP50-214ENST00000469163 MPHOSPH9Q99550 1183 aa13.42□□□□□ -0.26
NUP50-214ENST00000469163 EPRSP07814 1512 aaKnown RBP13.42□□□□□ -0.26
NUP50-214ENST00000469163 PAXIP1Q6ZW49 1069 aaPredicted RBP13.41□□□□□ -0.26
NUP50-214ENST00000469163 ARHGEF11O15085 1522 aa13.41□□□□□ -0.26
NUP50-214ENST00000469163 FGD6Q6ZV73 1430 aa13.41□□□□□ -0.26
NUP50-214ENST00000469163 NEFMP07197 916 aa13.41□□□□□ -0.26
NUP50-214ENST00000469163 CCDC18Q5T9S5 1454 aa13.41□□□□□ -0.26
NUP50-214ENST00000469163 NCBP3Q53F19 620 aaKnown RBP13.4□□□□□ -0.26
NUP50-214ENST00000469163 ESF1Q9H501 851 aaKnown RBP13.4□□□□□ -0.26
NUP50-214ENST00000469163 STAG3Q9UJ98 1225 aa13.4□□□□□ -0.26
NUP50-214ENST00000469163 HSP90AA2PQ14568 343 aaPredicted RBP13.4□□□□□ -0.26
NUP50-214ENST00000469163 NUP155O75694 1391 aa13.4□□□□□ -0.27
NUP50-214ENST00000469163 TIAM1Q13009 1591 aa13.38□□□□□ -0.27
NUP50-214ENST00000469163 ERCC6L2Q5T890 1561 aa13.38□□□□□ -0.27
NUP50-214ENST00000469163 DCAF11Q8TEB1 546 aa13.38□□□□□ -0.27
NUP50-214ENST00000469163 NUP160Q12769 1436 aa13.37□□□□□ -0.27
NUP50-214ENST00000469163 FYCO1Q9BQS8 1478 aa13.37□□□□□ -0.27
NUP50-214ENST00000469163 SPAG9O60271 1321 aaKnown RBP13.37□□□□□ -0.27
NUP50-214ENST00000469163 DHX57Q6P158 1386 aaKnown RBP13.37□□□□□ -0.27
NUP50-214ENST00000469163 MYOM3Q5VTT5 1437 aa13.36□□□□□ -0.27
NUP50-214ENST00000469163 SAMD9Q5K651 1589 aa13.36□□□□□ -0.27
NUP50-214ENST00000469163 DISP1Q96F81 1524 aa13.36□□□□□ -0.27
NUP50-214ENST00000469163 SAFB2Q14151 953 aaKnown RBP eCLIP13.35□□□□□ -0.27
NUP50-214ENST00000469163 UACAQ9BZF9 1416 aa13.35□□□□□ -0.27
NUP50-214ENST00000469163 ZBTB47Q9UFB7 747 aaPredicted RBP13.34□□□□□ -0.27
NUP50-214ENST00000469163 NUP153P49790 1475 aaKnown RBP13.33□□□□□ -0.27
NUP50-214ENST00000469163 IRX6P78412 446 aaPredicted RBP13.33□□□□□ -0.28
NUP50-214ENST00000469163 C11orf95C9JLR9 678 aaPredicted RBP13.32□□□□□ -0.28
NUP50-214ENST00000469163 L3MBTL2Q969R5 705 aa13.32□□□□□ -0.28
NUP50-214ENST00000469163 PTPRKQ15262 1439 aa13.32□□□□□ -0.28
NUP50-214ENST00000469163 EFCAB5A4FU69 1503 aa13.32□□□□□ -0.28
NUP50-214ENST00000469163 ATP10BO94823 1461 aa13.31□□□□□ -0.28
NUP50-214ENST00000469163 UGGT2Q9NYU1 1516 aa13.3□□□□□ -0.28
NUP50-214ENST00000469163 ANP32AP39687 249 aaKnown RBP13.3□□□□□ -0.28
NUP50-214ENST00000469163 LRRIQ1Q96JM4 1722 aa13.29□□□□□ -0.28
NUP50-214ENST00000469163 DHX37Q8IY37 1157 aaKnown RBP13.29□□□□□ -0.28
NUP50-214ENST00000469163 TROQ12816 1431 aaPredicted RBP13.28□□□□□ -0.28
NUP50-214ENST00000469163 ARHGAP5Q13017 1502 aa13.28□□□□□ -0.28
NUP50-214ENST00000469163 SCAPERQ9BY12 1400 aa13.28□□□□□ -0.28
NUP50-214ENST00000469163 LAS1LQ9Y4W2 734 aaKnown RBP13.27□□□□□ -0.28
NUP50-214ENST00000469163 KIAA0556O60303 1618 aa13.27□□□□□ -0.29
NUP50-214ENST00000469163 CHMP4BQ9H444 224 aaKnown RBP13.27□□□□□ -0.29
NUP50-214ENST00000469163 ANKRD30AQ9BXX3 1397 aa13.26□□□□□ -0.29
NUP50-214ENST00000469163 MAGI3Q5TCQ9 1506 aa13.26□□□□□ -0.29
NUP50-214ENST00000469163 CLASP1Q7Z460 1538 aa13.25□□□□□ -0.29
NUP50-214ENST00000469163 NAP1L2Q9ULW6 460 aaPredicted RBP13.25□□□□□ -0.29
NUP50-214ENST00000469163 KIF15Q9NS87 1388 aa13.25□□□□□ -0.29
NUP50-214ENST00000469163 RRBP1Q9P2E9 1410 aaKnown RBP13.25□□□□□ -0.29
NUP50-214ENST00000469163 BBXQ8WY36 941 aaPredicted RBP13.25□□□□□ -0.29
NUP50-214ENST00000469163 NAP1L5Q96NT1 182 aaPredicted RBP13.25□□□□□ -0.29
NUP50-214ENST00000469163 HSP90AA1P07900 732 aaKnown RBP13.25□□□□□ -0.29
NUP50-214ENST00000469163 ARXQ96QS3 562 aa13.25□□□□□ -0.29
NUP50-214ENST00000469163 WASHC2CQ9Y4E1 1318 aa13.24□□□□□ -0.29
NUP50-214ENST00000469163 STK26Q9P289 416 aa13.24□□□□□ -0.29
NUP50-214ENST00000469163 SHROOM2Q13796 1616 aa13.23□□□□□ -0.29
NUP50-214ENST00000469163 RRP9O43818 475 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms