RNA–Protein interactions for RNA: ENST00000468676.5

TMEM39A-205, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 935 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-205ENST00000468676 RAPGEF3O95398 923 aa23.3■■□□□ 1.32
TMEM39A-205ENST00000468676 CDC42BPBQ9Y5S2 1711 aa23.3■■□□□ 1.32
TMEM39A-205ENST00000468676 APLP2Q06481 763 aa23.29■■□□□ 1.32
TMEM39A-205ENST00000468676 ADGRL1O94910 1474 aa23.29■■□□□ 1.32
TMEM39A-205ENST00000468676 CDC42BPAQ5VT25 1732 aa23.28■■□□□ 1.32
TMEM39A-205ENST00000468676 CCNB3Q8WWL7 1395 aa23.27■■□□□ 1.32
TMEM39A-205ENST00000468676 SCAPERQ9BY12 1400 aa23.26■■□□□ 1.31
TMEM39A-205ENST00000468676 GPATCH8Q9UKJ3 1502 aaKnown RBP23.26■■□□□ 1.31
TMEM39A-205ENST00000468676 RICTORQ6R327 1708 aa23.25■■□□□ 1.31
TMEM39A-205ENST00000468676 LRRC9Q6ZRR7 1453 aa23.24■■□□□ 1.31
TMEM39A-205ENST00000468676 SUPT6HQ7KZ85 1726 aaKnown RBP23.24■■□□□ 1.31
TMEM39A-205ENST00000468676 FRMPD1Q5SYB0 1578 aa23.23■■□□□ 1.31
TMEM39A-205ENST00000468676 CFDP1Q9UEE9 299 aaPredicted RBP23.22■■□□□ 1.31
TMEM39A-205ENST00000468676 POGZQ7Z3K3 1410 aa23.21■■□□□ 1.31
TMEM39A-205ENST00000468676 NCOA2Q15596 1464 aa23.19■■□□□ 1.3
TMEM39A-205ENST00000468676 ITSN2Q9NZM3 1697 aa23.19■■□□□ 1.3
TMEM39A-205ENST00000468676 ZMYM4Q5VZL5 1548 aa23.18■■□□□ 1.3
TMEM39A-205ENST00000468676 MAGI2Q86UL8 1455 aa23.18■■□□□ 1.3
TMEM39A-205ENST00000468676 ZNF518AQ6AHZ1 1483 aa23.17■■□□□ 1.3
TMEM39A-205ENST00000468676 KANK4Q5T7N3 995 aaPredicted RBP23.17■■□□□ 1.3
TMEM39A-205ENST00000468676 ZNF777Q9ULD5 760 aaPredicted RBP23.16■■□□□ 1.3
TMEM39A-205ENST00000468676 ABCC1P33527 1531 aa23.16■■□□□ 1.3
TMEM39A-205ENST00000468676 PLEKHH2Q8IVE3 1493 aa23.16■■□□□ 1.3
TMEM39A-205ENST00000468676 KIAA1107Q9UPP5 1409 aa23.13■■□□□ 1.29
TMEM39A-205ENST00000468676 SAMD9LQ8IVG5 1584 aa23.13■■□□□ 1.29
TMEM39A-205ENST00000468676 AFAP1Q8N556 730 aa23.11■■□□□ 1.29
TMEM39A-205ENST00000468676 ARHGEF40Q8TER5 1519 aa23.11■■□□□ 1.29
TMEM39A-205ENST00000468676 KDM5CP41229 1560 aa23.1■■□□□ 1.29
TMEM39A-205ENST00000468676 ZFYVE16Q7Z3T8 1539 aa23.1■■□□□ 1.29
TMEM39A-205ENST00000468676 ARHGEF12Q9NZN5 1544 aa23.1■■□□□ 1.29
TMEM39A-205ENST00000468676 TRAPPC8Q9Y2L5 1435 aa23.08■■□□□ 1.29
TMEM39A-205ENST00000468676 HNRNPMP52272 730 aaKnown RBP eCLIP23.07■■□□□ 1.288e-7■■■□□ 16.7
TMEM39A-205ENST00000468676 SYCP2Q9BX26 1530 aa23.07■■□□□ 1.28
TMEM39A-205ENST00000468676 MLH3Q9UHC1 1453 aa23.05■■□□□ 1.28
TMEM39A-205ENST00000468676 MYT1LQ9UL68 1186 aa23.05■■□□□ 1.28
TMEM39A-205ENST00000468676 YEATS2Q9ULM3 1422 aa23.05■■□□□ 1.28
TMEM39A-205ENST00000468676 KDM4FA0A1W2PPD8 638 aa23.04■■□□□ 1.28
TMEM39A-205ENST00000468676 HECW2Q9P2P5 1572 aa23.04■■□□□ 1.28
TMEM39A-205ENST00000468676 MYOM3Q5VTT5 1437 aa23.03■■□□□ 1.28
TMEM39A-205ENST00000468676 ZNF644Q9H582 1327 aaPredicted RBP23.03■■□□□ 1.28
TMEM39A-205ENST00000468676 MIA2Q96PC5 1412 aa23.02■■□□□ 1.28
TMEM39A-205ENST00000468676 RSPH4AQ5TD94 716 aa23.02■■□□□ 1.28
TMEM39A-205ENST00000468676 ATP10AO60312 1499 aa23.02■■□□□ 1.28
TMEM39A-205ENST00000468676 ARID4BQ4LE39 1312 aaPredicted RBP23.01■■□□□ 1.27
TMEM39A-205ENST00000468676 SPAG9O60271 1321 aaKnown RBP23■■□□□ 1.27
TMEM39A-205ENST00000468676 CAMSAP2Q08AD1 1489 aa22.99■■□□□ 1.27
TMEM39A-205ENST00000468676 MBD5Q9P267 1494 aa22.98■■□□□ 1.27
TMEM39A-205ENST00000468676 C9orf84Q5VXU9 1444 aa22.98■■□□□ 1.27
TMEM39A-205ENST00000468676 KIDINS220Q9ULH0 1771 aa22.96■■□□□ 1.27
TMEM39A-205ENST00000468676 DIP2CQ9Y2E4 1556 aa22.94■■□□□ 1.26
TMEM39A-205ENST00000468676 CCDC141Q6ZP82 1450 aa22.93■■□□□ 1.26
TMEM39A-205ENST00000468676 REREQ9P2R6 1566 aa22.93■■□□□ 1.26
TMEM39A-205ENST00000468676 BCORL1Q5H9F3 1711 aa22.92■■□□□ 1.26
TMEM39A-205ENST00000468676 ABCA6Q8N139 1617 aa22.92■■□□□ 1.26
TMEM39A-205ENST00000468676 ARHGEF5Q12774 1597 aa22.92■■□□□ 1.26
TMEM39A-205ENST00000468676 ATP7AQ04656 1500 aa22.92■■□□□ 1.26
TMEM39A-205ENST00000468676 RTEL1-TNFRSF6BF6WH68 1400 aa22.91■■□□□ 1.26
TMEM39A-205ENST00000468676 INO80Q9ULG1 1556 aaPredicted RBP22.91■■□□□ 1.26
TMEM39A-205ENST00000468676 TSPY4P0CV99 314 aa22.89■■□□□ 1.25
TMEM39A-205ENST00000468676 TSPY10P0CW01 314 aa22.89■■□□□ 1.25
TMEM39A-205ENST00000468676 ADAMTSL3P82987 1691 aa22.89■■□□□ 1.25
TMEM39A-205ENST00000468676 FGD6Q6ZV73 1430 aa22.89■■□□□ 1.25
TMEM39A-205ENST00000468676 PTPN23Q9H3S7 1636 aa22.87■■□□□ 1.25
TMEM39A-205ENST00000468676 SIGLEC1Q9BZZ2 1709 aa22.86■■□□□ 1.25
TMEM39A-205ENST00000468676 AGLP35573 1532 aa22.86■■□□□ 1.25
TMEM39A-205ENST00000468676 TCOF1Q13428 1488 aaKnown RBP22.84■■□□□ 1.25
TMEM39A-205ENST00000468676 ADGBQ8N7X0 1667 aa22.83■■□□□ 1.24
TMEM39A-205ENST00000468676 A2MP01023 1474 aa22.82■■□□□ 1.24
TMEM39A-205ENST00000468676 MLECQ14165 292 aa22.81■■□□□ 1.24
TMEM39A-205ENST00000468676 MAST1Q9Y2H9 1570 aa22.8■■□□□ 1.24
TMEM39A-205ENST00000468676 MADDQ8WXG6 1647 aa22.79■■□□□ 1.24
TMEM39A-205ENST00000468676 PLXNC1O60486 1568 aa22.77■■□□□ 1.24
TMEM39A-205ENST00000468676 DHX29Q7Z478 1369 aaKnown RBP22.76■■□□□ 1.23
TMEM39A-205ENST00000468676 PTPRMP28827 1452 aa22.76■■□□□ 1.23
TMEM39A-205ENST00000468676 SHANK2Q9UPX8 1470 aa22.75■■□□□ 1.23
TMEM39A-205ENST00000468676 PPARGC1BQ86YN6 1023 aaKnown RBP22.75■■□□□ 1.23
TMEM39A-205ENST00000468676 FER1L4A9Z1Z3 1794 aa22.75■■□□□ 1.23
TMEM39A-205ENST00000468676 DNMT1P26358 1616 aaKnown RBP22.75■■□□□ 1.23
TMEM39A-205ENST00000468676 ABCC5O15440 1437 aa22.74■■□□□ 1.23
TMEM39A-205ENST00000468676 RIMS1Q86UR5 1692 aaKnown RBP22.74■■□□□ 1.23
TMEM39A-205ENST00000468676 DAPK1P53355 1430 aa22.74■■□□□ 1.23
TMEM39A-205ENST00000468676 FAM50AQ14320 339 aaKnown RBP22.73■■□□□ 1.23
TMEM39A-205ENST00000468676 CROCC2H7BZ55 1655 aa22.72■■□□□ 1.23
TMEM39A-205ENST00000468676 ESF1Q9H501 851 aaKnown RBP22.72■■□□□ 1.23
TMEM39A-205ENST00000468676 PPP6R1Q9UPN7 881 aa22.7■■□□□ 1.22
TMEM39A-205ENST00000468676 CNTLNQ9NXG0 1405 aa22.68■■□□□ 1.22
TMEM39A-205ENST00000468676 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.67■■□□□ 1.22
TMEM39A-205ENST00000468676 ANKRD30AQ9BXX3 1397 aa22.65■■□□□ 1.22
TMEM39A-205ENST00000468676 KIF3BO15066 747 aa22.65■■□□□ 1.22
TMEM39A-205ENST00000468676 GGT6Q6P531 493 aa22.65■■□□□ 1.22
TMEM39A-205ENST00000468676 DUOX2Q9NRD8 1548 aa22.65■■□□□ 1.22
TMEM39A-205ENST00000468676 KIF15Q9NS87 1388 aa22.63■■□□□ 1.21
TMEM39A-205ENST00000468676 RRP7BPQ9NSQ0 103 aa22.62■■□□□ 1.21
TMEM39A-205ENST00000468676 CHIC2Q9UKJ5 165 aa22.61■■□□□ 1.21
TMEM39A-205ENST00000468676 EIF2AK4Q9P2K8 1649 aaKnown RBP22.6■■□□□ 1.21
TMEM39A-205ENST00000468676 ADGRL2O95490 1459 aa22.6■■□□□ 1.21
TMEM39A-205ENST00000468676 NCOA1Q15788 1441 aa22.6■■□□□ 1.21
TMEM39A-205ENST00000468676 MROH2AA6NES4 1674 aa22.59■■□□□ 1.21
TMEM39A-205ENST00000468676 FAM135AQ9P2D6 1515 aa22.59■■□□□ 1.21
TMEM39A-205ENST00000468676 ERBINQ96RT1 1412 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms