RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 CAMSAP2Q08AD1 1489 aa12.47□□□□□ -0.41
BRCA1-208ENST00000468300 CROCC2H7BZ55 1655 aa12.46□□□□□ -0.41
BRCA1-208ENST00000468300 ITGAEP38570 1179 aa12.46□□□□□ -0.42
BRCA1-208ENST00000468300 MYO5CQ9NQX4 1742 aa12.45□□□□□ -0.42
BRCA1-208ENST00000468300 SAMD9LQ8IVG5 1584 aa12.45□□□□□ -0.42
BRCA1-208ENST00000468300 WDR7Q9Y4E6 1490 aa12.44□□□□□ -0.42
BRCA1-208ENST00000468300 ABCC5O15440 1437 aa12.44□□□□□ -0.42
BRCA1-208ENST00000468300 DAPK1P53355 1430 aa12.43□□□□□ -0.42
BRCA1-208ENST00000468300 GCC2Q8IWJ2 1684 aa12.43□□□□□ -0.42
BRCA1-208ENST00000468300 ABCA9Q8IUA7 1624 aa12.42□□□□□ -0.42
BRCA1-208ENST00000468300 RAB3GAP2Q9H2M9 1393 aa12.42□□□□□ -0.42
BRCA1-208ENST00000468300 ASXL2Q76L83 1435 aa12.42□□□□□ -0.42
BRCA1-208ENST00000468300 HFM1A2PYH4 1435 aa12.42□□□□□ -0.42
BRCA1-208ENST00000468300 SETD5Q9C0A6 1442 aa12.42□□□□□ -0.42
BRCA1-208ENST00000468300 KDM6BO15054 1643 aa12.41□□□□□ -0.42
BRCA1-208ENST00000468300 NAIPQ13075 1403 aa12.41□□□□□ -0.42
BRCA1-208ENST00000468300 MBD5Q9P267 1494 aa12.41□□□□□ -0.42
BRCA1-208ENST00000468300 CFDP1Q9UEE9 299 aaPredicted RBP12.4□□□□□ -0.42
BRCA1-208ENST00000468300 DHX57Q6P158 1386 aaKnown RBP12.4□□□□□ -0.42
BRCA1-208ENST00000468300 AKNAQ7Z591 1439 aa12.39□□□□□ -0.43
BRCA1-208ENST00000468300 ARHGEF5Q12774 1597 aa12.39□□□□□ -0.43
BRCA1-208ENST00000468300 PLCH2O75038 1416 aa12.39□□□□□ -0.43
BRCA1-208ENST00000468300 ADGBQ8N7X0 1667 aa12.38□□□□□ -0.43
BRCA1-208ENST00000468300 ARAP3Q8WWN8 1544 aa12.38□□□□□ -0.43
BRCA1-208ENST00000468300 ARHGEF12Q9NZN5 1544 aa12.38□□□□□ -0.43
BRCA1-208ENST00000468300 KCNH8Q96L42 1107 aa12.37□□□□□ -0.43
BRCA1-208ENST00000468300 MAPKBP1O60336 1514 aa12.37□□□□□ -0.43
BRCA1-208ENST00000468300 ARHGAP5Q13017 1502 aa12.36□□□□□ -0.43
BRCA1-208ENST00000468300 ROCK1Q13464 1354 aa12.36□□□□□ -0.43
BRCA1-208ENST00000468300 ADGRL2O95490 1459 aa12.36□□□□□ -0.43
BRCA1-208ENST00000468300 CCER1Q8TC90 406 aaPredicted RBP12.36□□□□□ -0.43
BRCA1-208ENST00000468300 SYCP2Q9BX26 1530 aa12.35□□□□□ -0.43
BRCA1-208ENST00000468300 SHANK2Q9UPX8 1470 aa12.35□□□□□ -0.43
BRCA1-208ENST00000468300 ABCC1P33527 1531 aa12.34□□□□□ -0.43
BRCA1-208ENST00000468300 CYB5RLQ6IPT4 315 aa12.34□□□□□ -0.43
BRCA1-208ENST00000468300 CHIC2Q9UKJ5 165 aa12.33□□□□□ -0.44
BRCA1-208ENST00000468300 ZNF777Q9ULD5 760 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-208ENST00000468300 NCOA1Q15788 1441 aa12.33□□□□□ -0.44
BRCA1-208ENST00000468300 KIAA1107Q9UPP5 1409 aa12.32□□□□□ -0.44
BRCA1-208ENST00000468300 MAST1Q9Y2H9 1570 aa12.32□□□□□ -0.44
BRCA1-208ENST00000468300 DENND4BO75064 1496 aaPredicted RBP12.32□□□□□ -0.44
BRCA1-208ENST00000468300 HNRNPMP52272 730 aaKnown RBP eCLIP12.31□□□□□ -0.44
BRCA1-208ENST00000468300 RRP7BPQ9NSQ0 103 aa12.31□□□□□ -0.44
BRCA1-208ENST00000468300 MAP3K4Q9Y6R4 1608 aa12.3□□□□□ -0.44
BRCA1-208ENST00000468300 CCDC141Q6ZP82 1450 aa12.3□□□□□ -0.44
BRCA1-208ENST00000468300 C9orf84Q5VXU9 1444 aa12.3□□□□□ -0.44
BRCA1-208ENST00000468300 ZEB1P37275 1124 aaPredicted RBP12.29□□□□□ -0.44
BRCA1-208ENST00000468300 GLI2P10070 1586 aa12.28□□□□□ -0.44
BRCA1-208ENST00000468300 FANCAO15360 1455 aa12.28□□□□□ -0.44
BRCA1-208ENST00000468300 PLEKHH2Q8IVE3 1493 aa12.28□□□□□ -0.44
BRCA1-208ENST00000468300 TRAPPC8Q9Y2L5 1435 aa12.28□□□□□ -0.44
BRCA1-208ENST00000468300 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
BRCA1-208ENST00000468300 PLXNC1O60486 1568 aa12.27□□□□□ -0.45
BRCA1-208ENST00000468300 DIP2BQ9P265 1576 aa12.27□□□□□ -0.45
BRCA1-208ENST00000468300 CLSPNQ9HAW4 1339 aa12.25□□□□□ -0.45
BRCA1-208ENST00000468300 PPRC1Q5VV67 1664 aaKnown RBP12.25□□□□□ -0.45
BRCA1-208ENST00000468300 EFCAB2Q5VUJ9 269 aa12.25□□□□□ -0.45
BRCA1-208ENST00000468300 PLPPR3Q6T4P5 718 aa12.25□□□□□ -0.45
BRCA1-208ENST00000468300 CD109Q6YHK3 1445 aa12.24□□□□□ -0.45
BRCA1-208ENST00000468300 INO80Q9ULG1 1556 aaPredicted RBP12.23□□□□□ -0.45
BRCA1-208ENST00000468300 ANKRD30AQ9BXX3 1397 aa12.23□□□□□ -0.45
BRCA1-208ENST00000468300 RSPH4AQ5TD94 716 aa12.23□□□□□ -0.45
BRCA1-208ENST00000468300 ZFYVE16Q7Z3T8 1539 aa12.23□□□□□ -0.45
BRCA1-208ENST00000468300 KIF13AQ9H1H9 1805 aa12.23□□□□□ -0.45
BRCA1-208ENST00000468300 CFAP74Q9C0B2 1584 aa12.23□□□□□ -0.45
BRCA1-208ENST00000468300 ADGRL1O94910 1474 aa12.21□□□□□ -0.45
BRCA1-208ENST00000468300 PZPP20742 1482 aa12.21□□□□□ -0.45
BRCA1-208ENST00000468300 ANKRD50Q9ULJ7 1429 aa12.21□□□□□ -0.46
BRCA1-208ENST00000468300 KIF15Q9NS87 1388 aa12.2□□□□□ -0.46
BRCA1-208ENST00000468300 KDM5CP41229 1560 aa12.2□□□□□ -0.46
BRCA1-208ENST00000468300 KIDINS220Q9ULH0 1771 aa12.2□□□□□ -0.46
BRCA1-208ENST00000468300 KDM5DQ9BY66 1539 aa12.2□□□□□ -0.46
BRCA1-208ENST00000468300 TSPY4P0CV99 314 aa12.19□□□□□ -0.46
BRCA1-208ENST00000468300 TSPY10P0CW01 314 aa12.19□□□□□ -0.46
BRCA1-208ENST00000468300 AFAP1Q8N556 730 aa12.19□□□□□ -0.46
BRCA1-208ENST00000468300 RTEL1-TNFRSF6BF6WH68 1400 aa12.19□□□□□ -0.46
BRCA1-208ENST00000468300 SCAPERQ9BY12 1400 aa12.19□□□□□ -0.46
BRCA1-208ENST00000468300 UNC13BO14795 1591 aa12.18□□□□□ -0.46
BRCA1-208ENST00000468300 NEO1Q92859 1461 aa12.18□□□□□ -0.46
BRCA1-208ENST00000468300 RICTORQ6R327 1708 aa12.18□□□□□ -0.46
BRCA1-208ENST00000468300 ATP7AQ04656 1500 aa12.17□□□□□ -0.46
BRCA1-208ENST00000468300 DUOX2Q9NRD8 1548 aa12.17□□□□□ -0.46
BRCA1-208ENST00000468300 FRMPD1Q5SYB0 1578 aa12.17□□□□□ -0.46
BRCA1-208ENST00000468300 POGZQ7Z3K3 1410 aa12.16□□□□□ -0.46
BRCA1-208ENST00000468300 MAGI2Q86UL8 1455 aa12.16□□□□□ -0.46
BRCA1-208ENST00000468300 MPHOSPH9Q99550 1183 aa12.15□□□□□ -0.46
BRCA1-208ENST00000468300 SIN3AQ96ST3 1273 aa12.15□□□□□ -0.46
BRCA1-208ENST00000468300 TSPOAP1O95153 1857 aa12.15□□□□□ -0.47
BRCA1-208ENST00000468300 ZNF518AQ6AHZ1 1483 aa12.15□□□□□ -0.47
BRCA1-208ENST00000468300 ERBINQ96RT1 1412 aa12.14□□□□□ -0.47
BRCA1-208ENST00000468300 DEPDC5O75140 1603 aa12.14□□□□□ -0.47
BRCA1-208ENST00000468300 IQGAP3Q86VI3 1631 aa12.12□□□□□ -0.47
BRCA1-208ENST00000468300 FAM69CQ0P6D2 419 aa12.12□□□□□ -0.47
BRCA1-208ENST00000468300 HECW2Q9P2P5 1572 aa12.12□□□□□ -0.47
BRCA1-208ENST00000468300 ABCA6Q8N139 1617 aa12.12□□□□□ -0.47
BRCA1-208ENST00000468300 RTN4Q9NQC3 1192 aaKnown RBP12.12□□□□□ -0.47
BRCA1-208ENST00000468300 SPAG9O60271 1321 aaKnown RBP12.12□□□□□ -0.47
BRCA1-208ENST00000468300 MLH3Q9UHC1 1453 aa12.12□□□□□ -0.47
BRCA1-208ENST00000468300 MROH1Q8NDA8 1641 aa12.11□□□□□ -0.47
BRCA1-208ENST00000468300 TRIM52Q96A61 297 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms