RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 KIF14Q15058 1648 aa22.14■■□□□ 1.14
CHD3-207ENST00000466233 CCDC18Q5T9S5 1454 aa22.14■■□□□ 1.13
CHD3-207ENST00000466233 EHMT2Q96KQ7 1210 aa22.13■■□□□ 1.13
CHD3-207ENST00000466233 YEATS2Q9ULM3 1422 aa22.13■■□□□ 1.13
CHD3-207ENST00000466233 MYO5CQ9NQX4 1742 aa22.12■■□□□ 1.13
CHD3-207ENST00000466233 MADDQ8WXG6 1647 aa22.12■■□□□ 1.13
CHD3-207ENST00000466233 ZNF518AQ6AHZ1 1483 aa22.11■■□□□ 1.13
CHD3-207ENST00000466233 ILDR1Q86SU0 546 aaPredicted RBP22.11■■□□□ 1.13
CHD3-207ENST00000466233 ATP10AO60312 1499 aa22.1■■□□□ 1.13
CHD3-207ENST00000466233 C9orf84Q5VXU9 1444 aa22.07■■□□□ 1.12
CHD3-207ENST00000466233 PCF11O94913 1555 aaKnown RBP22.06■■□□□ 1.12
CHD3-207ENST00000466233 ARHGAP5Q13017 1502 aa22.06■■□□□ 1.12
CHD3-207ENST00000466233 KDM5CP41229 1560 aa22.05■■□□□ 1.12
CHD3-207ENST00000466233 FYCO1Q9BQS8 1478 aa22.05■■□□□ 1.12
CHD3-207ENST00000466233 LMTK3Q96Q04 1460 aa22.03■■□□□ 1.12
CHD3-207ENST00000466233 MLH3Q9UHC1 1453 aa22.02■■□□□ 1.12
CHD3-207ENST00000466233 LRRIQ1Q96JM4 1722 aa22.01■■□□□ 1.11
CHD3-207ENST00000466233 RIMS1Q86UR5 1692 aaKnown RBP22.01■■□□□ 1.11
CHD3-207ENST00000466233 ARHGEF12Q9NZN5 1544 aa22.01■■□□□ 1.11
CHD3-207ENST00000466233 AFAP1Q8N556 730 aa22■■□□□ 1.11
CHD3-207ENST00000466233 REREQ9P2R6 1566 aa21.99■■□□□ 1.11
CHD3-207ENST00000466233 SIGLEC1Q9BZZ2 1709 aa21.98■■□□□ 1.11
CHD3-207ENST00000466233 PREX2Q70Z35 1606 aa21.97■■□□□ 1.11
CHD3-207ENST00000466233 CDC42BPBQ9Y5S2 1711 aa21.96■■□□□ 1.11
CHD3-207ENST00000466233 ABCC1P33527 1531 aa21.94■■□□□ 1.1
CHD3-207ENST00000466233 AGLP35573 1532 aa21.93■■□□□ 1.1
CHD3-207ENST00000466233 MLECQ14165 292 aa21.93■■□□□ 1.1
CHD3-207ENST00000466233 FER1L4A9Z1Z3 1794 aa21.92■■□□□ 1.1
CHD3-207ENST00000466233 FBXO41Q8TF61 875 aa21.91■■□□□ 1.1
CHD3-207ENST00000466233 DIP2CQ9Y2E4 1556 aa21.91■■□□□ 1.1
CHD3-207ENST00000466233 TRAPPC8Q9Y2L5 1435 aa21.9■■□□□ 1.1
CHD3-207ENST00000466233 KIAA1107Q9UPP5 1409 aa21.89■■□□□ 1.1
CHD3-207ENST00000466233 GPATCH8Q9UKJ3 1502 aaKnown RBP21.88■■□□□ 1.09
CHD3-207ENST00000466233 MYT1LQ9UL68 1186 aa21.87■■□□□ 1.09
CHD3-207ENST00000466233 PLEKHH2Q8IVE3 1493 aa21.87■■□□□ 1.09
CHD3-207ENST00000466233 CDC42BPAQ5VT25 1732 aa21.86■■□□□ 1.09
CHD3-207ENST00000466233 ITSN2Q9NZM3 1697 aa21.85■■□□□ 1.09
CHD3-207ENST00000466233 ABCA6Q8N139 1617 aa21.83■■□□□ 1.08
CHD3-207ENST00000466233 CNTLNQ9NXG0 1405 aa21.82■■□□□ 1.08
CHD3-207ENST00000466233 HSPA2P54652 639 aa21.82■■□□□ 1.08
CHD3-207ENST00000466233 SETD1BQ9UPS6 1966 aaKnown RBP21.81■■□□□ 1.08
CHD3-207ENST00000466233 CFDP1Q9UEE9 299 aaPredicted RBP21.81■■□□□ 1.08
CHD3-207ENST00000466233 CCNB3Q8WWL7 1395 aa21.81■■□□□ 1.08
CHD3-207ENST00000466233 KIDINS220Q9ULH0 1771 aa21.8■■□□□ 1.08
CHD3-207ENST00000466233 SAMD9LQ8IVG5 1584 aa21.8■■□□□ 1.08
CHD3-207ENST00000466233 MTUS2Q5JR59 1369 aa21.8■■□□□ 1.08
CHD3-207ENST00000466233 PREX1Q8TCU6 1659 aa21.79■■□□□ 1.08
CHD3-207ENST00000466233 ESF1Q9H501 851 aaKnown RBP21.79■■□□□ 1.08
CHD3-207ENST00000466233 DMRT2Q9Y5R5 561 aa21.79■■□□□ 1.08
CHD3-207ENST00000466233 SPAG9O60271 1321 aaKnown RBP21.79■■□□□ 1.08
CHD3-207ENST00000466233 CEBPAP49715 358 aaPredicted RBP21.77■■□□□ 1.08
CHD3-207ENST00000466233 PLPPR3Q6T4P5 718 aa21.77■■□□□ 1.08
CHD3-207ENST00000466233 ZNF777Q9ULD5 760 aaPredicted RBP21.77■■□□□ 1.08
CHD3-207ENST00000466233 UHRF1BP1Q6BDS2 1440 aa21.77■■□□□ 1.08
CHD3-207ENST00000466233 SYCP2Q9BX26 1530 aa21.75■■□□□ 1.07
CHD3-207ENST00000466233 CEP162Q5TB80 1403 aa21.74■■□□□ 1.07
CHD3-207ENST00000466233 HNRNPMP52272 730 aaKnown RBP eCLIP21.74■■□□□ 1.07
CHD3-207ENST00000466233 PPP6R1Q9UPN7 881 aa21.74■■□□□ 1.07
CHD3-207ENST00000466233 EHBP1L1Q8N3D4 1523 aa21.73■■□□□ 1.07
CHD3-207ENST00000466233 NPATQ14207 1427 aa21.71■■□□□ 1.07
CHD3-207ENST00000466233 ATP7AQ04656 1500 aa21.7■■□□□ 1.07
CHD3-207ENST00000466233 RSPH4AQ5TD94 716 aa21.7■■□□□ 1.06
CHD3-207ENST00000466233 RTEL1-TNFRSF6BF6WH68 1400 aa21.69■■□□□ 1.06
CHD3-207ENST00000466233 INO80Q9ULG1 1556 aaPredicted RBP21.69■■□□□ 1.06
CHD3-207ENST00000466233 A2MP01023 1474 aa21.68■■□□□ 1.06
CHD3-207ENST00000466233 PLXNC1O60486 1568 aa21.68■■□□□ 1.06
CHD3-207ENST00000466233 C3P01024 1663 aa21.68■■□□□ 1.06
CHD3-207ENST00000466233 MBD5Q9P267 1494 aa21.67■■□□□ 1.06
CHD3-207ENST00000466233 CERKQ8TCT0 537 aa21.67■■□□□ 1.06
CHD3-207ENST00000466233 MROH2AA6NES4 1674 aa21.66■■□□□ 1.06
CHD3-207ENST00000466233 TIAM1Q13009 1591 aa21.65■■□□□ 1.06
CHD3-207ENST00000466233 PTPRTO14522 1441 aa21.65■■□□□ 1.06
CHD3-207ENST00000466233 ZMYM3Q14202 1370 aa21.65■■□□□ 1.06
CHD3-207ENST00000466233 STRCQ7RTU9 1775 aa21.61■■□□□ 1.05
CHD3-207ENST00000466233 ZNF644Q9H582 1327 aaPredicted RBP21.6■■□□□ 1.05
CHD3-207ENST00000466233 ADGBQ8N7X0 1667 aa21.59■■□□□ 1.05
CHD3-207ENST00000466233 DHX29Q7Z478 1369 aaKnown RBP21.59■■□□□ 1.05
CHD3-207ENST00000466233 NCOA2Q15596 1464 aa21.58■■□□□ 1.04
CHD3-207ENST00000466233 NCOA1Q15788 1441 aa21.56■■□□□ 1.04
CHD3-207ENST00000466233 FAM135AQ9P2D6 1515 aa21.56■■□□□ 1.04
CHD3-207ENST00000466233 SUPT6HQ7KZ85 1726 aaKnown RBP21.56■■□□□ 1.04
CHD3-207ENST00000466233 VPS8Q8N3P4 1428 aa21.55■■□□□ 1.04
CHD3-207ENST00000466233 MAP3K1Q13233 1512 aa21.55■■□□□ 1.04
CHD3-207ENST00000466233 CCDC141Q6ZP82 1450 aa21.55■■□□□ 1.04
CHD3-207ENST00000466233 GGT6Q6P531 493 aa21.54■■□□□ 1.04
CHD3-207ENST00000466233 PTPRKQ15262 1439 aa21.54■■□□□ 1.04
CHD3-207ENST00000466233 PLA2R1Q13018 1463 aa21.52■■□□□ 1.03
CHD3-207ENST00000466233 CAMSAP2Q08AD1 1489 aa21.51■■□□□ 1.03
CHD3-207ENST00000466233 LRRC9Q6ZRR7 1453 aa21.51■■□□□ 1.03
CHD3-207ENST00000466233 ARHGEF5Q12774 1597 aa21.5■■□□□ 1.03
CHD3-207ENST00000466233 PKD2Q13563 968 aa21.5■■□□□ 1.03
CHD3-207ENST00000466233 TSPY4P0CV99 314 aa21.49■■□□□ 1.03
CHD3-207ENST00000466233 TSPY10P0CW01 314 aa21.49■■□□□ 1.03
CHD3-207ENST00000466233 IQSEC2Q5JU85 1478 aa21.49■■□□□ 1.03
CHD3-207ENST00000466233 CLTCQ00610 1675 aaKnown RBP21.48■■□□□ 1.03
CHD3-207ENST00000466233 CAMSAP1Q5T5Y3 1602 aa21.46■■□□□ 1.03
CHD3-207ENST00000466233 ZNF142P52746 1687 aaPredicted RBP21.46■■□□□ 1.03
CHD3-207ENST00000466233 MIA2Q96PC5 1412 aa21.46■■□□□ 1.03
CHD3-207ENST00000466233 KIF3BO15066 747 aa21.44■■□□□ 1.02
CHD3-207ENST00000466233 LOC105371045A0A1W2PR82 267 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms