RNA–Protein interactions for RNA: ENST00000465441.1

CSPG5-204, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

TSL 4

Gene CSPG5, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-204ENST00000465441 CLIP1P30622 1438 aa33.98■■■■□ 3.03
CSPG5-204ENST00000465441 ZFYVE16Q7Z3T8 1539 aa33.98■■■■□ 3.03
CSPG5-204ENST00000465441 POGZQ7Z3K3 1410 aa33.97■■■■□ 3.03
CSPG5-204ENST00000465441 CASKIN1Q8WXD9 1431 aa33.97■■■■□ 3.03
CSPG5-204ENST00000465441 MADDQ8WXG6 1647 aa33.97■■■■□ 3.03
CSPG5-204ENST00000465441 MYO5CQ9NQX4 1742 aa33.96■■■■□ 3.03
CSPG5-204ENST00000465441 ILDR1Q86SU0 546 aaPredicted RBP33.92■■■■□ 3.02
CSPG5-204ENST00000465441 MLECQ14165 292 aa33.9■■■■□ 3.02
CSPG5-204ENST00000465441 AFAP1Q8N556 730 aa33.9■■■■□ 3.02
CSPG5-204ENST00000465441 PCF11O94913 1555 aaKnown RBP33.89■■■■□ 3.02
CSPG5-204ENST00000465441 ARHGAP5Q13017 1502 aa33.89■■■■□ 3.02
CSPG5-204ENST00000465441 CCDC18Q5T9S5 1454 aa33.88■■■■□ 3.01
CSPG5-204ENST00000465441 SIGLEC1Q9BZZ2 1709 aa33.87■■■■□ 3.01
CSPG5-204ENST00000465441 ATP10AO60312 1499 aa33.85■■■■□ 3.01
CSPG5-204ENST00000465441 RIMS1Q86UR5 1692 aaKnown RBP33.84■■■■□ 3.01
CSPG5-204ENST00000465441 PLPPR3Q6T4P5 718 aa33.84■■■■□ 3.01
CSPG5-204ENST00000465441 MYT1LQ9UL68 1186 aa33.8■■■■□ 3
CSPG5-204ENST00000465441 ZNF518AQ6AHZ1 1483 aa33.8■■■■□ 3
CSPG5-204ENST00000465441 CDC42BPBQ9Y5S2 1711 aa33.79■■■■□ 3
CSPG5-204ENST00000465441 FYCO1Q9BQS8 1478 aa33.78■■■■□ 3
CSPG5-204ENST00000465441 C9orf84Q5VXU9 1444 aa33.78■■■■□ 3
CSPG5-204ENST00000465441 KDM5CP41229 1560 aa33.72■■■□□ 2.99
CSPG5-204ENST00000465441 LMTK3Q96Q04 1460 aa33.71■■■□□ 2.99
CSPG5-204ENST00000465441 ARHGEF12Q9NZN5 1544 aa33.71■■■□□ 2.99
CSPG5-204ENST00000465441 PREX2Q70Z35 1606 aa33.7■■■□□ 2.99
CSPG5-204ENST00000465441 TRAPPC8Q9Y2L5 1435 aa33.7■■■□□ 2.98
CSPG5-204ENST00000465441 MLH3Q9UHC1 1453 aa33.66■■■□□ 2.98
CSPG5-204ENST00000465441 ZNF777Q9ULD5 760 aaPredicted RBP33.66■■■□□ 2.98
CSPG5-204ENST00000465441 HSPA2P54652 639 aa33.65■■■□□ 2.98
CSPG5-204ENST00000465441 FER1L4A9Z1Z3 1794 aa33.64■■■□□ 2.98
CSPG5-204ENST00000465441 ABCC1P33527 1531 aa33.63■■■□□ 2.97
CSPG5-204ENST00000465441 CDC42BPAQ5VT25 1732 aa33.63■■■□□ 2.97
CSPG5-204ENST00000465441 CEBPAP49715 358 aaPredicted RBP33.62■■■□□ 2.97
CSPG5-204ENST00000465441 GPATCH8Q9UKJ3 1502 aaKnown RBP33.61■■■□□ 2.97
CSPG5-204ENST00000465441 DIP2CQ9Y2E4 1556 aa33.6■■■□□ 2.97
CSPG5-204ENST00000465441 HNRNPMP52272 730 aaKnown RBP eCLIP33.57■■■□□ 2.96
CSPG5-204ENST00000465441 ITSN2Q9NZM3 1697 aa33.57■■■□□ 2.96
CSPG5-204ENST00000465441 ABCA6Q8N139 1617 aa33.54■■■□□ 2.96
CSPG5-204ENST00000465441 CFDP1Q9UEE9 299 aaPredicted RBP33.54■■■□□ 2.96
CSPG5-204ENST00000465441 REREQ9P2R6 1566 aa33.54■■■□□ 2.96
CSPG5-204ENST00000465441 MTUS2Q5JR59 1369 aa33.53■■■□□ 2.96
CSPG5-204ENST00000465441 CCNB3Q8WWL7 1395 aa33.51■■■□□ 2.96
CSPG5-204ENST00000465441 SAMD9LQ8IVG5 1584 aa33.51■■■□□ 2.95
CSPG5-204ENST00000465441 KIDINS220Q9ULH0 1771 aa33.49■■■□□ 2.95
CSPG5-204ENST00000465441 CEP162Q5TB80 1403 aa33.48■■■□□ 2.95
CSPG5-204ENST00000465441 AGLP35573 1532 aa33.48■■■□□ 2.95
CSPG5-204ENST00000465441 SPAG9O60271 1321 aaKnown RBP33.47■■■□□ 2.95
CSPG5-204ENST00000465441 SYCP2Q9BX26 1530 aa33.44■■■□□ 2.94
CSPG5-204ENST00000465441 FBXO41Q8TF61 875 aa33.44■■■□□ 2.94
CSPG5-204ENST00000465441 ESF1Q9H501 851 aaKnown RBP33.44■■■□□ 2.94
CSPG5-204ENST00000465441 KIAA1107Q9UPP5 1409 aa33.44■■■□□ 2.94
CSPG5-204ENST00000465441 PLEKHH2Q8IVE3 1493 aa33.39■■■□□ 2.94
CSPG5-204ENST00000465441 LOC105371045A0A1W2PR82 267 aa33.39■■■□□ 2.94
CSPG5-204ENST00000465441 ZNF644Q9H582 1327 aaPredicted RBP33.38■■■□□ 2.93
CSPG5-204ENST00000465441 SETD1BQ9UPS6 1966 aaKnown RBP33.36■■■□□ 2.93
CSPG5-204ENST00000465441 PREX1Q8TCU6 1659 aa33.35■■■□□ 2.93
CSPG5-204ENST00000465441 EHBP1L1Q8N3D4 1523 aa33.33■■■□□ 2.93
CSPG5-204ENST00000465441 UHRF1BP1Q6BDS2 1440 aa33.31■■■□□ 2.92
CSPG5-204ENST00000465441 TIAM1Q13009 1591 aa33.3■■■□□ 2.92
CSPG5-204ENST00000465441 C3P01024 1663 aa33.29■■■□□ 2.92
CSPG5-204ENST00000465441 ATP7AQ04656 1500 aa33.29■■■□□ 2.92
CSPG5-204ENST00000465441 CNTLNQ9NXG0 1405 aa33.28■■■□□ 2.92
CSPG5-204ENST00000465441 MBD5Q9P267 1494 aa33.25■■■□□ 2.91
CSPG5-204ENST00000465441 SUPT6HQ7KZ85 1726 aaKnown RBP33.25■■■□□ 2.91
CSPG5-204ENST00000465441 A2MP01023 1474 aa33.25■■■□□ 2.91
CSPG5-204ENST00000465441 INO80Q9ULG1 1556 aaPredicted RBP33.23■■■□□ 2.91
CSPG5-204ENST00000465441 ZMYM3Q14202 1370 aa33.22■■■□□ 2.91
CSPG5-204ENST00000465441 GGT6Q6P531 493 aa33.22■■■□□ 2.91
CSPG5-204ENST00000465441 DMRT2Q9Y5R5 561 aa33.21■■■□□ 2.91
CSPG5-204ENST00000465441 NCOA2Q15596 1464 aa33.19■■■□□ 2.9
CSPG5-204ENST00000465441 CERKQ8TCT0 537 aa33.19■■■□□ 2.9
CSPG5-204ENST00000465441 PLXNC1O60486 1568 aa33.17■■■□□ 2.9
CSPG5-204ENST00000465441 STRCQ7RTU9 1775 aa33.16■■■□□ 2.9
CSPG5-204ENST00000465441 RTEL1-TNFRSF6BF6WH68 1400 aa33.15■■■□□ 2.9
CSPG5-204ENST00000465441 VPS8Q8N3P4 1428 aa33.14■■■□□ 2.9
CSPG5-204ENST00000465441 RSPH4AQ5TD94 716 aa33.13■■■□□ 2.89
CSPG5-204ENST00000465441 PPP6R1Q9UPN7 881 aa33.11■■■□□ 2.89
CSPG5-204ENST00000465441 MROH2AA6NES4 1674 aa33.1■■■□□ 2.89
CSPG5-204ENST00000465441 NPATQ14207 1427 aa33.1■■■□□ 2.89
CSPG5-204ENST00000465441 DHX29Q7Z478 1369 aaKnown RBP33.09■■■□□ 2.89
CSPG5-204ENST00000465441 ADGBQ8N7X0 1667 aa33.08■■■□□ 2.89
CSPG5-204ENST00000465441 CLTCQ00610 1675 aaKnown RBP33.07■■■□□ 2.88
CSPG5-204ENST00000465441 CAMSAP2Q08AD1 1489 aa33.06■■■□□ 2.88
CSPG5-204ENST00000465441 KANK4Q5T7N3 995 aaPredicted RBP33.06■■■□□ 2.88
CSPG5-204ENST00000465441 LRRC9Q6ZRR7 1453 aa33.05■■■□□ 2.88
CSPG5-204ENST00000465441 CCDC141Q6ZP82 1450 aa33.05■■■□□ 2.88
CSPG5-204ENST00000465441 PTPRTO14522 1441 aa33.03■■■□□ 2.88
CSPG5-204ENST00000465441 KIF3BO15066 747 aa33.02■■■□□ 2.88
CSPG5-204ENST00000465441 TSPY4P0CV99 314 aa33.01■■■□□ 2.87
CSPG5-204ENST00000465441 TSPY10P0CW01 314 aa33.01■■■□□ 2.87
CSPG5-204ENST00000465441 PTPRKQ15262 1439 aa33.01■■■□□ 2.87
CSPG5-204ENST00000465441 NCOA1Q15788 1441 aa32.98■■■□□ 2.87
CSPG5-204ENST00000465441 MAP3K1Q13233 1512 aa32.95■■■□□ 2.87
CSPG5-204ENST00000465441 CAMSAP1Q5T5Y3 1602 aa32.94■■■□□ 2.86
CSPG5-204ENST00000465441 NCKAP5LQ9HCH0 1330 aa32.93■■■□□ 2.86
CSPG5-204ENST00000465441 ARHGEF5Q12774 1597 aa32.92■■■□□ 2.86
CSPG5-204ENST00000465441 FBXO31Q5XUX0 539 aaPredicted RBP32.88■■■□□ 2.85
CSPG5-204ENST00000465441 WASHC2CQ9Y4E1 1318 aa32.87■■■□□ 2.85
CSPG5-204ENST00000465441 MYO3AQ8NEV4 1616 aa32.84■■■□□ 2.85
CSPG5-204ENST00000465441 PKD2Q13563 968 aa32.84■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms