RNA–Protein interactions for RNA: ENST00000465143.1

ITSN1-223, Transcript of intersectin 1, human

TSL 3

Gene ITSN1, Length 614 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-223	ENST00000465143	NUP153	P49790	1475 aa	Known RBP	12.24	□□□□□ -0.45
ITSN1-223	ENST00000465143	PIP4P2	Q8N4L2	257 aa		12.23	□□□□□ -0.45
ITSN1-223	ENST00000465143	GLI2	P10070	1586 aa		12.22	□□□□□ -0.45
ITSN1-223	ENST00000465143	CLIP1	P30622	1438 aa		12.22	□□□□□ -0.45
ITSN1-223	ENST00000465143	CD109	Q6YHK3	1445 aa		12.22	□□□□□ -0.45
ITSN1-223	ENST00000465143	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.22	□□□□□ -0.45
ITSN1-223	ENST00000465143	RAPGEF6	Q8TEU7	1601 aa		12.22	□□□□□ -0.45
ITSN1-223	ENST00000465143	SP7	Q8TDD2	431 aa	Predicted RBP	12.21	□□□□□ -0.45
ITSN1-223	ENST00000465143	TEX14	Q8IWB6	1497 aa		12.21	□□□□□ -0.46
ITSN1-223	ENST00000465143	KIF13A	Q9H1H9	1805 aa		12.18	□□□□□ -0.46
ITSN1-223	ENST00000465143	PITPNM1	O00562	1244 aa		12.17	□□□□□ -0.46
ITSN1-223	ENST00000465143	MAGI3	Q5TCQ9	1506 aa		12.15	□□□□□ -0.46
ITSN1-223	ENST00000465143	CASKIN1	Q8WXD9	1431 aa		12.14	□□□□□ -0.47
ITSN1-223	ENST00000465143	CDK13	Q14004	1512 aa	Known RBP	12.14	□□□□□ -0.47
ITSN1-223	ENST00000465143	CEP162	Q5TB80	1403 aa		12.13	□□□□□ -0.47
ITSN1-223	ENST00000465143	KDM6B	O15054	1643 aa		12.13	□□□□□ -0.47
ITSN1-223	ENST00000465143	HECW1	Q76N89	1606 aa		12.12	□□□□□ -0.47
ITSN1-223	ENST00000465143	MAP3K4	Q9Y6R4	1608 aa		12.11	□□□□□ -0.47
ITSN1-223	ENST00000465143	TSPOAP1	O95153	1857 aa		12.11	□□□□□ -0.47
ITSN1-223	ENST00000465143	PHLDB1	Q86UU1	1377 aa		12.11	□□□□□ -0.47
ITSN1-223	ENST00000465143	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.1	□□□□□ -0.47
ITSN1-223	ENST00000465143	HAX1	O00165	279 aa		12.09	□□□□□ -0.47
ITSN1-223	ENST00000465143	TRO	Q12816	1431 aa	Predicted RBP	12.09	□□□□□ -0.47
ITSN1-223	ENST00000465143	CCDC18	Q5T9S5	1454 aa		12.08	□□□□□ -0.47
ITSN1-223	ENST00000465143	FXR2	P51116	673 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
ITSN1-223	ENST00000465143	FYCO1	Q9BQS8	1478 aa		12.08	□□□□□ -0.48
ITSN1-223	ENST00000465143	CFAP43	Q8NDM7	1665 aa		12.06	□□□□□ -0.48
ITSN1-223	ENST00000465143	RAPGEF3	O95398	923 aa		12.06	□□□□□ -0.48
ITSN1-223	ENST00000465143	EFCAB2	Q5VUJ9	269 aa		12.06	□□□□□ -0.48
ITSN1-223	ENST00000465143	ABCA9	Q8IUA7	1624 aa		12.06	□□□□□ -0.48
ITSN1-223	ENST00000465143	NEO1	Q92859	1461 aa		12.06	□□□□□ -0.48
ITSN1-223	ENST00000465143	PPRC1	Q5VV67	1664 aa	Known RBP	12.06	□□□□□ -0.48
ITSN1-223	ENST00000465143	PCF11	O94913	1555 aa	Known RBP	12.05	□□□□□ -0.48
ITSN1-223	ENST00000465143	PLCH2	O75038	1416 aa		12.04	□□□□□ -0.48
ITSN1-223	ENST00000465143	FANCA	O15360	1455 aa		12.04	□□□□□ -0.48
ITSN1-223	ENST00000465143	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	12.04	□□□□□ -0.48
ITSN1-223	ENST00000465143	AKNA	Q7Z591	1439 aa		12.03	□□□□□ -0.48
ITSN1-223	ENST00000465143	ARAP3	Q8WWN8	1544 aa		12.03	□□□□□ -0.48
ITSN1-223	ENST00000465143	MTUS2	Q5JR59	1369 aa		12.03	□□□□□ -0.48
ITSN1-223	ENST00000465143	ATXN8OS	P0DMR3	200 aa		12.02	□□□□□ -0.49
ITSN1-223	ENST00000465143	DENND4B	O75064	1496 aa	Predicted RBP	12.01	□□□□□ -0.49
ITSN1-223	ENST00000465143	TTC37	Q6PGP7	1564 aa		12	□□□□□ -0.49
ITSN1-223	ENST00000465143	EVX2	Q03828	476 aa		11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	MYT1L	Q9UL68	1186 aa		11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	VPS8	Q8N3P4	1428 aa		11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	SCAPER	Q9BY12	1400 aa		11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	ADGRL1	O94910	1474 aa		11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	KIF14	Q15058	1648 aa		11.99	□□□□□ -0.49
ITSN1-223	ENST00000465143	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.98	□□□□□ -0.49
ITSN1-223	ENST00000465143	KDM4F	A0A1W2PPD8	638 aa		11.98	□□□□□ -0.49
ITSN1-223	ENST00000465143	ARHGAP5	Q13017	1502 aa		11.97	□□□□□ -0.49
ITSN1-223	ENST00000465143	CCNB3	Q8WWL7	1395 aa		11.97	□□□□□ -0.49
ITSN1-223	ENST00000465143	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.97	□□□□□ -0.49
ITSN1-223	ENST00000465143	SPDYE2B	A6NHP3	402 aa		11.94	□□□□□ -0.5
ITSN1-223	ENST00000465143	SPDYE6	P0CI01	402 aa		11.94	□□□□□ -0.5
ITSN1-223	ENST00000465143	SPDYE2	Q495Y8	402 aa		11.94	□□□□□ -0.5
ITSN1-223	ENST00000465143	AFAP1	Q8N556	730 aa		11.94	□□□□□ -0.5
ITSN1-223	ENST00000465143	POGZ	Q7Z3K3	1410 aa		11.94	□□□□□ -0.5
ITSN1-223	ENST00000465143	CFAP74	Q9C0B2	1584 aa		11.93	□□□□□ -0.5
ITSN1-223	ENST00000465143	MKRN4P	Q13434	485 aa	Predicted RBP	11.92	□□□□□ -0.5
ITSN1-223	ENST00000465143	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.91	□□□□□ -0.5
ITSN1-223	ENST00000465143	EHBP1L1	Q8N3D4	1523 aa		11.9	□□□□□ -0.5
ITSN1-223	ENST00000465143	MAGI2	Q86UL8	1455 aa		11.89	□□□□□ -0.51
ITSN1-223	ENST00000465143	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
ITSN1-223	ENST00000465143	KANK4	Q5T7N3	995 aa	Predicted RBP	11.89	□□□□□ -0.51
ITSN1-223	ENST00000465143	ZNF518A	Q6AHZ1	1483 aa		11.89	□□□□□ -0.51
ITSN1-223	ENST00000465143	YEATS2	Q9ULM3	1422 aa		11.88	□□□□□ -0.51
ITSN1-223	ENST00000465143	MLEC	Q14165	292 aa		11.88	□□□□□ -0.51
ITSN1-223	ENST00000465143	CLEC11A	Q9Y240	323 aa		11.88	□□□□□ -0.51
ITSN1-223	ENST00000465143	LRRIQ1	Q96JM4	1722 aa		11.88	□□□□□ -0.51
ITSN1-223	ENST00000465143	FRMPD1	Q5SYB0	1578 aa		11.88	□□□□□ -0.51
ITSN1-223	ENST00000465143	TRAPPC8	Q9Y2L5	1435 aa		11.87	□□□□□ -0.51
ITSN1-223	ENST00000465143	ZFYVE16	Q7Z3T8	1539 aa		11.87	□□□□□ -0.51
ITSN1-223	ENST00000465143	SPAG9	O60271	1321 aa	Known RBP	11.86	□□□□□ -0.51
ITSN1-223	ENST00000465143	ZNF644	Q9H582	1327 aa	Predicted RBP	11.86	□□□□□ -0.51
ITSN1-223	ENST00000465143	NCOA2	Q15596	1464 aa		11.86	□□□□□ -0.51
ITSN1-223	ENST00000465143	LRRC9	Q6ZRR7	1453 aa		11.86	□□□□□ -0.51
ITSN1-223	ENST00000465143	PLEKHH2	Q8IVE3	1493 aa		11.86	□□□□□ -0.51
ITSN1-223	ENST00000465143	MYO5C	Q9NQX4	1742 aa		11.86	□□□□□ -0.51
ITSN1-223	ENST00000465143	TIAM1	Q13009	1591 aa		11.85	□□□□□ -0.51
ITSN1-223	ENST00000465143	PRKAR2A	P13861	404 aa	Known RBP	11.85	□□□□□ -0.51
ITSN1-223	ENST00000465143	ZMYM4	Q5VZL5	1548 aa		11.85	□□□□□ -0.51
ITSN1-223	ENST00000465143	KIAA1107	Q9UPP5	1409 aa		11.85	□□□□□ -0.51
ITSN1-223	ENST00000465143	ATP10A	O60312	1499 aa		11.84	□□□□□ -0.51
ITSN1-223	ENST00000465143	ARHGEF40	Q8TER5	1519 aa		11.84	□□□□□ -0.51
ITSN1-223	ENST00000465143	ARHGEF12	Q9NZN5	1544 aa		11.84	□□□□□ -0.51
ITSN1-223	ENST00000465143	C9orf84	Q5VXU9	1444 aa		11.84	□□□□□ -0.51
ITSN1-223	ENST00000465143	PREX2	Q70Z35	1606 aa		11.83	□□□□□ -0.52
ITSN1-223	ENST00000465143	ABCC1	P33527	1531 aa		11.83	□□□□□ -0.52
ITSN1-223	ENST00000465143	MAP3K1	Q13233	1512 aa		11.83	□□□□□ -0.52
ITSN1-223	ENST00000465143	RSPH4A	Q5TD94	716 aa		11.82	□□□□□ -0.52
ITSN1-223	ENST00000465143	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.82	□□□□□ -0.52
ITSN1-223	ENST00000465143	ZNF692	Q9BU19	519 aa	Predicted RBP	11.82	□□□□□ -0.52
ITSN1-223	ENST00000465143	MLH3	Q9UHC1	1453 aa		11.82	□□□□□ -0.52
ITSN1-223	ENST00000465143	ESF1	Q9H501	851 aa	Known RBP	11.81	□□□□□ -0.52
ITSN1-223	ENST00000465143	SYCP2	Q9BX26	1530 aa		11.81	□□□□□ -0.52
ITSN1-223	ENST00000465143	RICTOR	Q6R327	1708 aa		11.8	□□□□□ -0.52
ITSN1-223	ENST00000465143	TSPY4	P0CV99	314 aa		11.8	□□□□□ -0.52
ITSN1-223	ENST00000465143	TSPY10	P0CW01	314 aa		11.8	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms