RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 DENND4BO75064 1496 aaPredicted RBP5□□□□□ -1.61
USP40-211ENST00000464956 SETD1AO15047 1707 aaKnown RBP5□□□□□ -1.61
USP40-211ENST00000464956 ARHGEF12Q9NZN5 1544 aa5□□□□□ -1.61
USP40-211ENST00000464956 FHOD3Q2V2M9 1422 aa4.99□□□□□ -1.61
USP40-211ENST00000464956 CAMSAP1Q5T5Y3 1602 aa4.99□□□□□ -1.61
USP40-211ENST00000464956 RXRBP28702 533 aa4.99□□□□□ -1.61
USP40-211ENST00000464956 EFCAB5A4FU69 1503 aa4.98□□□□□ -1.61
USP40-211ENST00000464956 ZFYVE16Q7Z3T8 1539 aa4.98□□□□□ -1.61
USP40-211ENST00000464956 PCDH10Q9P2E7 1040 aa4.98□□□□□ -1.61
USP40-211ENST00000464956 MAGI2Q86UL8 1455 aa4.98□□□□□ -1.61
USP40-211ENST00000464956 FRMPD1Q5SYB0 1578 aa4.98□□□□□ -1.61
USP40-211ENST00000464956 FER1L4A9Z1Z3 1794 aa4.97□□□□□ -1.61
USP40-211ENST00000464956 PLA2R1Q13018 1463 aa4.97□□□□□ -1.61
USP40-211ENST00000464956 SHANK2Q9UPX8 1470 aa4.97□□□□□ -1.61
USP40-211ENST00000464956 SLC34A2O95436 690 aa4.97□□□□□ -1.61
USP40-211ENST00000464956 SETBP1Q9Y6X0 1596 aa4.96□□□□□ -1.62
USP40-211ENST00000464956 NUTM2BA6NNL0 878 aaPredicted RBP4.96□□□□□ -1.62
USP40-211ENST00000464956 NUTM2EB1AL46 878 aaPredicted RBP4.96□□□□□ -1.62
USP40-211ENST00000464956 MEX3CQ5U5Q3 659 aaKnown RBP4.96□□□□□ -1.62
USP40-211ENST00000464956 NUTM2DQ5VT03 806 aaPredicted RBP4.96□□□□□ -1.62
USP40-211ENST00000464956 NUTM2AQ8IVF1 878 aaPredicted RBP4.96□□□□□ -1.62
USP40-211ENST00000464956 C9orf84Q5VXU9 1444 aa4.96□□□□□ -1.62
USP40-211ENST00000464956 SRCAPQ6ZRS2 3230 aa4.95□□□□□ -1.62
USP40-211ENST00000464956 ATP10AO60312 1499 aa4.94□□□□□ -1.62
USP40-211ENST00000464956 TCOF1Q13428 1488 aaKnown RBP4.94□□□□□ -1.62
USP40-211ENST00000464956 CDK12Q9NYV4 1490 aaPredicted RBP4.94□□□□□ -1.62
USP40-211ENST00000464956 RAPGEF2Q9Y4G8 1499 aa4.94□□□□□ -1.62
USP40-211ENST00000464956 LRRC7Q96NW7 1537 aa4.94□□□□□ -1.62
USP40-211ENST00000464956 FAM9AQ8IZU1 332 aaPredicted RBP4.94□□□□□ -1.62
USP40-211ENST00000464956 ALKQ9UM73 1620 aa4.94□□□□□ -1.62
USP40-211ENST00000464956 ATAD2Q6PL18 1390 aa4.93□□□□□ -1.62
USP40-211ENST00000464956 ZMYM4Q5VZL5 1548 aa4.93□□□□□ -1.62
USP40-211ENST00000464956 DISP1Q96F81 1524 aa4.93□□□□□ -1.62
USP40-211ENST00000464956 NPATQ14207 1427 aa4.93□□□□□ -1.62
USP40-211ENST00000464956 FAM135BQ49AJ0 1406 aa4.92□□□□□ -1.62
USP40-211ENST00000464956 CNTLNQ9NXG0 1405 aa4.92□□□□□ -1.62
USP40-211ENST00000464956 C1QTNF8P60827 252 aa4.92□□□□□ -1.62
USP40-211ENST00000464956 CCDC125Q86Z20 511 aa4.92□□□□□ -1.62
USP40-211ENST00000464956 JCADQ9P266 1359 aa4.91□□□□□ -1.62
USP40-211ENST00000464956 DCAF8L1A6NGE4 600 aa4.91□□□□□ -1.62
USP40-211ENST00000464956 ARID3CA6NKF2 412 aa4.91□□□□□ -1.62
USP40-211ENST00000464956 SETD1BQ9UPS6 1966 aaKnown RBP4.91□□□□□ -1.62
USP40-211ENST00000464956 IQGAP2Q13576 1575 aa4.91□□□□□ -1.62
USP40-211ENST00000464956 IGF1RP08069 1367 aa4.91□□□□□ -1.62
USP40-211ENST00000464956 ABCA9Q8IUA7 1624 aa4.9□□□□□ -1.62
USP40-211ENST00000464956 MYT1LQ9UL68 1186 aa4.9□□□□□ -1.63
USP40-211ENST00000464956 SPATA31A6Q5VVP1 1343 aa4.9□□□□□ -1.63
USP40-211ENST00000464956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.89□□□□□ -1.63
USP40-211ENST00000464956 HNRNPUL2Q1KMD3 747 aaKnown RBP4.89□□□□□ -1.63
USP40-211ENST00000464956 SIGLEC1Q9BZZ2 1709 aa4.89□□□□□ -1.63
USP40-211ENST00000464956 RBM6P78332 1123 aaKnown RBP4.88□□□□□ -1.63
USP40-211ENST00000464956 ANKLE2Q86XL3 938 aa4.88□□□□□ -1.63
USP40-211ENST00000464956 LRP5O75197 1615 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 RNF17Q9BXT8 1623 aaKnown RBP4.87□□□□□ -1.63
USP40-211ENST00000464956 ZNF784Q8NCA9 323 aaPredicted RBP4.87□□□□□ -1.63
USP40-211ENST00000464956 NGLY1Q96IV0 654 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 ZMYM3Q14202 1370 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 CARMIL1Q5VZK9 1371 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 RGS12O14924 1447 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 SCAPERQ9BY12 1400 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 UGGT2Q9NYU1 1516 aa4.87□□□□□ -1.63
USP40-211ENST00000464956 HECW1Q76N89 1606 aa4.86□□□□□ -1.63
USP40-211ENST00000464956 RICTORQ6R327 1708 aa4.86□□□□□ -1.63
USP40-211ENST00000464956 ATP10BO94823 1461 aa4.86□□□□□ -1.63
USP40-211ENST00000464956 ABCA8O94911 1581 aa4.86□□□□□ -1.63
USP40-211ENST00000464956 HRCP23327 699 aa4.85□□□□□ -1.63
USP40-211ENST00000464956 QTRT2Q9H974 415 aaKnown RBP4.85□□□□□ -1.63
USP40-211ENST00000464956 AFF2P51816 1311 aa4.85□□□□□ -1.63
USP40-211ENST00000464956 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.85□□□□□ -1.63
USP40-211ENST00000464956 CEP170BQ9Y4F5 1589 aaPredicted RBP4.85□□□□□ -1.63
USP40-211ENST00000464956 C3P01024 1663 aa4.85□□□□□ -1.63
USP40-211ENST00000464956 RAPGEF6Q8TEU7 1601 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 VWDEQ8N2E2 1590 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 CFAP74Q9C0B2 1584 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 AGLP35573 1532 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 CDK13Q14004 1512 aaKnown RBP4.84□□□□□ -1.63
USP40-211ENST00000464956 NPHP4O75161 1426 aaPredicted RBP4.84□□□□□ -1.63
USP40-211ENST00000464956 KIF27Q86VH2 1401 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 CAPN15O75808 1086 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 SF3B2Q13435 895 aaKnown RBP4.84□□□□□ -1.63
USP40-211ENST00000464956 EHMT2Q96KQ7 1210 aa4.84□□□□□ -1.63
USP40-211ENST00000464956 LRP6O75581 1613 aa4.83□□□□□ -1.64
USP40-211ENST00000464956 A2ML1A8K2U0 1454 aa4.83□□□□□ -1.64
USP40-211ENST00000464956 FGD6Q6ZV73 1430 aa4.83□□□□□ -1.64
USP40-211ENST00000464956 PSDA5PKW4 1024 aaPredicted RBP4.83□□□□□ -1.64
USP40-211ENST00000464956 PLEKHD1A6NEE1 506 aa4.83□□□□□ -1.64
USP40-211ENST00000464956 GOLGA3Q08378 1498 aa4.82□□□□□ -1.64
USP40-211ENST00000464956 THEMISQ8N1K5 641 aaPredicted RBP4.82□□□□□ -1.64
USP40-211ENST00000464956 NHSL1Q5SYE7 1610 aa4.81□□□□□ -1.64
USP40-211ENST00000464956 SYNMO15061 1565 aa4.81□□□□□ -1.64
USP40-211ENST00000464956 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.81□□□□□ -1.64
USP40-211ENST00000464956 ZNF518AQ6AHZ1 1483 aa4.81□□□□□ -1.64
USP40-211ENST00000464956 LRRC9Q6ZRR7 1453 aa4.81□□□□□ -1.64
USP40-211ENST00000464956 BLMP54132 1417 aaPredicted RBP4.8□□□□□ -1.64
USP40-211ENST00000464956 ZNF142P52746 1687 aaPredicted RBP4.8□□□□□ -1.64
USP40-211ENST00000464956 BIVM-ERCC5R4GMW8 1640 aa4.8□□□□□ -1.64
USP40-211ENST00000464956 NEURL4Q96JN8 1562 aa4.8□□□□□ -1.64
USP40-211ENST00000464956 GIGYF1O75420 1035 aaPredicted RBP4.8□□□□□ -1.64
USP40-211ENST00000464956 PRELPP51888 382 aa4.8□□□□□ -1.64
USP40-211ENST00000464956 EFCAB2Q5VUJ9 269 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms