RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 SCAPERQ9BY12 1400 aa28.81■■■□□ 2.2
HMGN1-209ENST00000463631 FER1L4A9Z1Z3 1794 aa28.78■■■□□ 2.2
HMGN1-209ENST00000463631 KIF14Q15058 1648 aa28.76■■■□□ 2.19
HMGN1-209ENST00000463631 ARHGEF12Q9NZN5 1544 aa28.73■■■□□ 2.19
HMGN1-209ENST00000463631 ATP10AO60312 1499 aa28.72■■■□□ 2.19
HMGN1-209ENST00000463631 C9orf84Q5VXU9 1444 aa28.71■■■□□ 2.19
HMGN1-209ENST00000463631 UBTFP17480 764 aaKnown RBP28.71■■■□□ 2.19
HMGN1-209ENST00000463631 CDK11AQ9UQ88 783 aaPredicted RBP28.71■■■□□ 2.19
HMGN1-209ENST00000463631 TROQ12816 1431 aaPredicted RBP28.7■■■□□ 2.19
HMGN1-209ENST00000463631 EFCAB2Q5VUJ9 269 aa28.7■■■□□ 2.18
HMGN1-209ENST00000463631 ZNF518AQ6AHZ1 1483 aa28.7■■■□□ 2.18
HMGN1-209ENST00000463631 KDM5CP41229 1560 aa28.7■■■□□ 2.18
HMGN1-209ENST00000463631 LRRIQ1Q96JM4 1722 aa28.68■■■□□ 2.18
HMGN1-209ENST00000463631 CLIP1P30622 1438 aa28.65■■■□□ 2.18
HMGN1-209ENST00000463631 ARHGAP5Q13017 1502 aa28.64■■■□□ 2.18
HMGN1-209ENST00000463631 HSPA2P54652 639 aa28.63■■■□□ 2.17
HMGN1-209ENST00000463631 ATP1B4Q9UN42 357 aaPredicted RBP28.62■■■□□ 2.17
HMGN1-209ENST00000463631 PREX1Q8TCU6 1659 aa28.61■■■□□ 2.17
HMGN1-209ENST00000463631 MLECQ14165 292 aa28.61■■■□□ 2.17
HMGN1-209ENST00000463631 REREQ9P2R6 1566 aa28.61■■■□□ 2.17
HMGN1-209ENST00000463631 DIP2CQ9Y2E4 1556 aa28.58■■■□□ 2.17
HMGN1-209ENST00000463631 CDC42BPBQ9Y5S2 1711 aa28.58■■■□□ 2.17
HMGN1-209ENST00000463631 PREX2Q70Z35 1606 aa28.58■■■□□ 2.17
HMGN1-209ENST00000463631 EHMT2Q96KQ7 1210 aa28.57■■■□□ 2.16
HMGN1-209ENST00000463631 CHIC1Q5VXU3 224 aa28.56■■■□□ 2.16
HMGN1-209ENST00000463631 CCDC18Q5T9S5 1454 aa28.55■■■□□ 2.16
HMGN1-209ENST00000463631 PLPPR3Q6T4P5 718 aa28.55■■■□□ 2.16
HMGN1-209ENST00000463631 MLH3Q9UHC1 1453 aa28.53■■■□□ 2.16
HMGN1-209ENST00000463631 CASKIN1Q8WXD9 1431 aa28.53■■■□□ 2.16
HMGN1-209ENST00000463631 ABCA6Q8N139 1617 aa28.53■■■□□ 2.16
HMGN1-209ENST00000463631 ABCC1P33527 1531 aa28.53■■■□□ 2.16
HMGN1-209ENST00000463631 AFAP1Q8N556 730 aa28.51■■■□□ 2.15
HMGN1-209ENST00000463631 ITSN2Q9NZM3 1697 aa28.49■■■□□ 2.15
HMGN1-209ENST00000463631 AGLP35573 1532 aa28.48■■■□□ 2.15
HMGN1-209ENST00000463631 SETD1BQ9UPS6 1966 aaKnown RBP28.45■■■□□ 2.14
HMGN1-209ENST00000463631 CDC42BPAQ5VT25 1732 aa28.44■■■□□ 2.14
HMGN1-209ENST00000463631 TRAPPC8Q9Y2L5 1435 aa28.43■■■□□ 2.14
HMGN1-209ENST00000463631 FYCO1Q9BQS8 1478 aa28.43■■■□□ 2.14
HMGN1-209ENST00000463631 UHRF1BP1Q6BDS2 1440 aa28.42■■■□□ 2.14
HMGN1-209ENST00000463631 CEBPAP49715 358 aaPredicted RBP28.41■■■□□ 2.14
HMGN1-209ENST00000463631 CERKQ8TCT0 537 aa28.41■■■□□ 2.14
HMGN1-209ENST00000463631 STRCQ7RTU9 1775 aa28.41■■■□□ 2.14
HMGN1-209ENST00000463631 C3P01024 1663 aa28.41■■■□□ 2.14
HMGN1-209ENST00000463631 KIDINS220Q9ULH0 1771 aa28.4■■■□□ 2.14
HMGN1-209ENST00000463631 MYT1LQ9UL68 1186 aa28.35■■■□□ 2.13
HMGN1-209ENST00000463631 DMRT2Q9Y5R5 561 aa28.33■■■□□ 2.13
HMGN1-209ENST00000463631 SAMD9LQ8IVG5 1584 aa28.33■■■□□ 2.12
HMGN1-209ENST00000463631 CNTLNQ9NXG0 1405 aa28.32■■■□□ 2.12
HMGN1-209ENST00000463631 SYCP2Q9BX26 1530 aa28.28■■■□□ 2.12
HMGN1-209ENST00000463631 MROH2AA6NES4 1674 aa28.28■■■□□ 2.12
HMGN1-209ENST00000463631 GPATCH8Q9UKJ3 1502 aaKnown RBP28.28■■■□□ 2.12
HMGN1-209ENST00000463631 PTPRTO14522 1441 aa28.26■■■□□ 2.11
HMGN1-209ENST00000463631 ESF1Q9H501 851 aaKnown RBP28.24■■■□□ 2.11
HMGN1-209ENST00000463631 INO80Q9ULG1 1556 aaPredicted RBP28.23■■■□□ 2.11
HMGN1-209ENST00000463631 KIAA1107Q9UPP5 1409 aa28.22■■■□□ 2.11
HMGN1-209ENST00000463631 PLEKHH2Q8IVE3 1493 aa28.21■■■□□ 2.11
HMGN1-209ENST00000463631 PLXNC1O60486 1568 aa28.21■■■□□ 2.11
HMGN1-209ENST00000463631 NPATQ14207 1427 aa28.21■■■□□ 2.11
HMGN1-209ENST00000463631 ATP7AQ04656 1500 aa28.21■■■□□ 2.11
HMGN1-209ENST00000463631 NCOA1Q15788 1441 aa28.18■■■□□ 2.1
HMGN1-209ENST00000463631 SPAG9O60271 1321 aaKnown RBP28.17■■■□□ 2.1
HMGN1-209ENST00000463631 SUPT6HQ7KZ85 1726 aaKnown RBP28.15■■■□□ 2.1
HMGN1-209ENST00000463631 ZNF777Q9ULD5 760 aaPredicted RBP28.15■■■□□ 2.1
HMGN1-209ENST00000463631 LTBP4Q8N2S1 1624 aa28.14■■■□□ 2.09
HMGN1-209ENST00000463631 CCNB3Q8WWL7 1395 aa28.11■■■□□ 2.09
HMGN1-209ENST00000463631 A2MP01023 1474 aa28.11■■■□□ 2.09
HMGN1-209ENST00000463631 ZNF142P52746 1687 aaPredicted RBP28.1■■■□□ 2.09
HMGN1-209ENST00000463631 IQSEC2Q5JU85 1478 aa28.1■■■□□ 2.09
HMGN1-209ENST00000463631 HNRNPMP52272 730 aaKnown RBP eCLIP28.1■■■□□ 2.09
HMGN1-209ENST00000463631 CFDP1Q9UEE9 299 aaPredicted RBP28.1■■■□□ 2.09
HMGN1-209ENST00000463631 ZMYM3Q14202 1370 aa28.1■■■□□ 2.09
HMGN1-209ENST00000463631 CLTCQ00610 1675 aaKnown RBP28.1■■■□□ 2.09
HMGN1-209ENST00000463631 CAMSAP1Q5T5Y3 1602 aa28.08■■■□□ 2.09
HMGN1-209ENST00000463631 ADGBQ8N7X0 1667 aa28.08■■■□□ 2.09
HMGN1-209ENST00000463631 MYO3AQ8NEV4 1616 aa28.07■■■□□ 2.08
HMGN1-209ENST00000463631 MTUS2Q5JR59 1369 aa28.07■■■□□ 2.08
HMGN1-209ENST00000463631 TIAM1Q13009 1591 aa28.07■■■□□ 2.08
HMGN1-209ENST00000463631 EHBP1L1Q8N3D4 1523 aa28.06■■■□□ 2.08
HMGN1-209ENST00000463631 PLA2R1Q13018 1463 aa28.02■■■□□ 2.08
HMGN1-209ENST00000463631 CEP170BQ9Y4F5 1589 aaPredicted RBP28.02■■■□□ 2.08
HMGN1-209ENST00000463631 PTPRKQ15262 1439 aa28.01■■■□□ 2.08
HMGN1-209ENST00000463631 MBD5Q9P267 1494 aa28.01■■■□□ 2.07
HMGN1-209ENST00000463631 CEP162Q5TB80 1403 aa27.99■■■□□ 2.07
HMGN1-209ENST00000463631 PPP6R1Q9UPN7 881 aa27.98■■■□□ 2.07
HMGN1-209ENST00000463631 RTEL1-TNFRSF6BF6WH68 1400 aa27.97■■■□□ 2.07
HMGN1-209ENST00000463631 TCOF1Q13428 1488 aaKnown RBP27.96■■■□□ 2.07
HMGN1-209ENST00000463631 ZNF644Q9H582 1327 aaPredicted RBP27.92■■■□□ 2.06
HMGN1-209ENST00000463631 FAM135AQ9P2D6 1515 aa27.92■■■□□ 2.06
HMGN1-209ENST00000463631 DISP3Q9P2K9 1392 aa27.91■■■□□ 2.06
HMGN1-209ENST00000463631 GGT6Q6P531 493 aa27.91■■■□□ 2.06
HMGN1-209ENST00000463631 PKD2Q13563 968 aa27.9■■■□□ 2.06
HMGN1-209ENST00000463631 SPATA31D1Q6ZQQ2 1576 aa27.89■■■□□ 2.05
HMGN1-209ENST00000463631 A2ML1A8K2U0 1454 aa27.88■■■□□ 2.05
HMGN1-209ENST00000463631 NCKAP5LQ9HCH0 1330 aa27.88■■■□□ 2.05
HMGN1-209ENST00000463631 DHX29Q7Z478 1369 aaKnown RBP27.87■■■□□ 2.05
HMGN1-209ENST00000463631 CCDC141Q6ZP82 1450 aa27.87■■■□□ 2.05
HMGN1-209ENST00000463631 DNMT1P26358 1616 aaKnown RBP27.85■■■□□ 2.05
HMGN1-209ENST00000463631 CAMSAP2Q08AD1 1489 aa27.84■■■□□ 2.05
HMGN1-209ENST00000463631 ZNF335Q9H4Z2 1342 aaPredicted RBP27.84■■■□□ 2.05
HMGN1-209ENST00000463631 NCOA2Q15596 1464 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms