RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TROQ12816 1431 aaPredicted RBP25.12■■□□□ 1.61
SKA3-204ENST00000462482 YEATS2Q9ULM3 1422 aa25.11■■□□□ 1.61
SKA3-204ENST00000462482 MADDQ8WXG6 1647 aa25.1■■□□□ 1.61
SKA3-204ENST00000462482 MLECQ14165 292 aa25.08■■□□□ 1.61
SKA3-204ENST00000462482 PLPPR3Q6T4P5 718 aa25.08■■□□□ 1.61
SKA3-204ENST00000462482 MYT1LQ9UL68 1186 aa25.07■■□□□ 1.6
SKA3-204ENST00000462482 KIF14Q15058 1648 aa25.07■■□□□ 1.6
SKA3-204ENST00000462482 ARHGAP5Q13017 1502 aa25.03■■□□□ 1.6
SKA3-204ENST00000462482 ATP10AO60312 1499 aa25.02■■□□□ 1.6
SKA3-204ENST00000462482 CASKIN1Q8WXD9 1431 aa25.01■■□□□ 1.59
SKA3-204ENST00000462482 CCDC18Q5T9S5 1454 aa25.01■■□□□ 1.59
SKA3-204ENST00000462482 PCF11O94913 1555 aaKnown RBP25.01■■□□□ 1.59
SKA3-204ENST00000462482 C9orf84Q5VXU9 1444 aa25■■□□□ 1.59
SKA3-204ENST00000462482 ZNF518AQ6AHZ1 1483 aa25■■□□□ 1.59
SKA3-204ENST00000462482 RIMS1Q86UR5 1692 aaKnown RBP24.99■■□□□ 1.59
SKA3-204ENST00000462482 MYO5CQ9NQX4 1742 aa24.99■■□□□ 1.59
SKA3-204ENST00000462482 AFAP1Q8N556 730 aa24.98■■□□□ 1.59
SKA3-204ENST00000462482 LMTK3Q96Q04 1460 aa24.96■■□□□ 1.59
SKA3-204ENST00000462482 FBXO41Q8TF61 875 aa24.92■■□□□ 1.58
SKA3-204ENST00000462482 HSPA2P54652 639 aa24.91■■□□□ 1.58
SKA3-204ENST00000462482 FYCO1Q9BQS8 1478 aa24.89■■□□□ 1.57
SKA3-204ENST00000462482 ESF1Q9H501 851 aaKnown RBP24.87■■□□□ 1.57
SKA3-204ENST00000462482 ARHGEF12Q9NZN5 1544 aa24.86■■□□□ 1.57
SKA3-204ENST00000462482 KDM5CP41229 1560 aa24.86■■□□□ 1.57
SKA3-204ENST00000462482 ZNF777Q9ULD5 760 aaPredicted RBP24.85■■□□□ 1.57
SKA3-204ENST00000462482 SIGLEC1Q9BZZ2 1709 aa24.84■■□□□ 1.57
SKA3-204ENST00000462482 MLH3Q9UHC1 1453 aa24.83■■□□□ 1.57
SKA3-204ENST00000462482 FER1L4A9Z1Z3 1794 aa24.82■■□□□ 1.56
SKA3-204ENST00000462482 TRAPPC8Q9Y2L5 1435 aa24.81■■□□□ 1.56
SKA3-204ENST00000462482 CEBPAP49715 358 aaPredicted RBP24.81■■□□□ 1.56
SKA3-204ENST00000462482 LRRIQ1Q96JM4 1722 aa24.81■■□□□ 1.56
SKA3-204ENST00000462482 PREX2Q70Z35 1606 aa24.8■■□□□ 1.56
SKA3-204ENST00000462482 ABCC1P33527 1531 aa24.8■■□□□ 1.56
SKA3-204ENST00000462482 DIP2CQ9Y2E4 1556 aa24.78■■□□□ 1.56
SKA3-204ENST00000462482 CDC42BPBQ9Y5S2 1711 aa24.76■■□□□ 1.55
SKA3-204ENST00000462482 REREQ9P2R6 1566 aa24.76■■□□□ 1.55
SKA3-204ENST00000462482 CFDP1Q9UEE9 299 aaPredicted RBP24.75■■□□□ 1.55
SKA3-204ENST00000462482 MTUS2Q5JR59 1369 aa24.75■■□□□ 1.55
SKA3-204ENST00000462482 CCNB3Q8WWL7 1395 aa24.74■■□□□ 1.55
SKA3-204ENST00000462482 UHRF1BP1Q6BDS2 1440 aa24.73■■□□□ 1.55
SKA3-204ENST00000462482 SPAG9O60271 1321 aaKnown RBP24.73■■□□□ 1.55
SKA3-204ENST00000462482 DMRT2Q9Y5R5 561 aa24.72■■□□□ 1.55
SKA3-204ENST00000462482 AGLP35573 1532 aa24.71■■□□□ 1.55
SKA3-204ENST00000462482 GPATCH8Q9UKJ3 1502 aaKnown RBP24.71■■□□□ 1.55
SKA3-204ENST00000462482 HNRNPMP52272 730 aaKnown RBP eCLIP24.71■■□□□ 1.55
SKA3-204ENST00000462482 ABCA6Q8N139 1617 aa24.71■■□□□ 1.55
SKA3-204ENST00000462482 PLEKHH2Q8IVE3 1493 aa24.7■■□□□ 1.54
SKA3-204ENST00000462482 ITSN2Q9NZM3 1697 aa24.69■■□□□ 1.54
SKA3-204ENST00000462482 CNTLNQ9NXG0 1405 aa24.68■■□□□ 1.54
SKA3-204ENST00000462482 CERKQ8TCT0 537 aa24.66■■□□□ 1.54
SKA3-204ENST00000462482 KIAA1107Q9UPP5 1409 aa24.66■■□□□ 1.54
SKA3-204ENST00000462482 CDC42BPAQ5VT25 1732 aa24.66■■□□□ 1.54
SKA3-204ENST00000462482 PREX1Q8TCU6 1659 aa24.66■■□□□ 1.54
SKA3-204ENST00000462482 SYCP2Q9BX26 1530 aa24.65■■□□□ 1.54
SKA3-204ENST00000462482 SAMD9LQ8IVG5 1584 aa24.64■■□□□ 1.54
SKA3-204ENST00000462482 KIDINS220Q9ULH0 1771 aa24.6■■□□□ 1.53
SKA3-204ENST00000462482 CEP162Q5TB80 1403 aa24.59■■□□□ 1.53
SKA3-204ENST00000462482 ATP7AQ04656 1500 aa24.56■■□□□ 1.52
SKA3-204ENST00000462482 EHBP1L1Q8N3D4 1523 aa24.56■■□□□ 1.52
SKA3-204ENST00000462482 A2MP01023 1474 aa24.54■■□□□ 1.52
SKA3-204ENST00000462482 GGT6Q6P531 493 aa24.54■■□□□ 1.52
SKA3-204ENST00000462482 ZMYM3Q14202 1370 aa24.54■■□□□ 1.52
SKA3-204ENST00000462482 ZNF644Q9H582 1327 aaPredicted RBP24.52■■□□□ 1.52
SKA3-204ENST00000462482 C3P01024 1663 aa24.52■■□□□ 1.52
SKA3-204ENST00000462482 NPATQ14207 1427 aa24.52■■□□□ 1.52
SKA3-204ENST00000462482 PPP6R1Q9UPN7 881 aa24.51■■□□□ 1.51
SKA3-204ENST00000462482 SETD1BQ9UPS6 1966 aaKnown RBP24.5■■□□□ 1.51
SKA3-204ENST00000462482 PTPRTO14522 1441 aa24.49■■□□□ 1.51
SKA3-204ENST00000462482 INO80Q9ULG1 1556 aaPredicted RBP24.48■■□□□ 1.51
SKA3-204ENST00000462482 TIAM1Q13009 1591 aa24.47■■□□□ 1.51
SKA3-204ENST00000462482 RSPH4AQ5TD94 716 aa24.46■■□□□ 1.51
SKA3-204ENST00000462482 RTEL1-TNFRSF6BF6WH68 1400 aa24.45■■□□□ 1.51
SKA3-204ENST00000462482 SUPT6HQ7KZ85 1726 aaKnown RBP24.44■■□□□ 1.5
SKA3-204ENST00000462482 MBD5Q9P267 1494 aa24.44■■□□□ 1.5
SKA3-204ENST00000462482 PLXNC1O60486 1568 aa24.43■■□□□ 1.5
SKA3-204ENST00000462482 MROH2AA6NES4 1674 aa24.42■■□□□ 1.5
SKA3-204ENST00000462482 NCOA1Q15788 1441 aa24.42■■□□□ 1.5
SKA3-204ENST00000462482 DHX29Q7Z478 1369 aaKnown RBP24.42■■□□□ 1.5
SKA3-204ENST00000462482 NCOA2Q15596 1464 aa24.41■■□□□ 1.5
SKA3-204ENST00000462482 STRCQ7RTU9 1775 aa24.41■■□□□ 1.5
SKA3-204ENST00000462482 CCDC141Q6ZP82 1450 aa24.38■■□□□ 1.49
SKA3-204ENST00000462482 KIF3BO15066 747 aa24.38■■□□□ 1.49
SKA3-204ENST00000462482 TSPY4P0CV99 314 aa24.38■■□□□ 1.49
SKA3-204ENST00000462482 TSPY10P0CW01 314 aa24.38■■□□□ 1.49
SKA3-204ENST00000462482 PTPRKQ15262 1439 aa24.36■■□□□ 1.49
SKA3-204ENST00000462482 PKD2Q13563 968 aa24.36■■□□□ 1.49
SKA3-204ENST00000462482 ADGBQ8N7X0 1667 aa24.36■■□□□ 1.49
SKA3-204ENST00000462482 CAMSAP1Q5T5Y3 1602 aa24.35■■□□□ 1.49
SKA3-204ENST00000462482 CLTCQ00610 1675 aaKnown RBP24.35■■□□□ 1.49
SKA3-204ENST00000462482 CAMSAP2Q08AD1 1489 aa24.35■■□□□ 1.49
SKA3-204ENST00000462482 VPS8Q8N3P4 1428 aa24.35■■□□□ 1.49
SKA3-204ENST00000462482 NCKAP5LQ9HCH0 1330 aa24.35■■□□□ 1.49
SKA3-204ENST00000462482 LOC105371045A0A1W2PR82 267 aa24.33■■□□□ 1.49
SKA3-204ENST00000462482 WASHC2CQ9Y4E1 1318 aa24.31■■□□□ 1.48
SKA3-204ENST00000462482 PLA2R1Q13018 1463 aa24.29■■□□□ 1.48
SKA3-204ENST00000462482 LRRC9Q6ZRR7 1453 aa24.28■■□□□ 1.48
SKA3-204ENST00000462482 CEP170BQ9Y4F5 1589 aaPredicted RBP24.27■■□□□ 1.48
SKA3-204ENST00000462482 MYO3AQ8NEV4 1616 aa24.26■■□□□ 1.47
SKA3-204ENST00000462482 TNRQ92752 1358 aa24.25■■□□□ 1.47
SKA3-204ENST00000462482 IQSEC2Q5JU85 1478 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms