RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 KCNH8Q96L42 1107 aa14.53□□□□□ -0.08
HDAC9-220ENST00000461409 CFAP43Q8NDM7 1665 aa14.52□□□□□ -0.09
HDAC9-220ENST00000461409 ATP10BO94823 1461 aa14.5□□□□□ -0.09
HDAC9-220ENST00000461409 ARID3CA6NKF2 412 aa14.48□□□□□ -0.09
HDAC9-220ENST00000461409 SPDYE2BA6NHP3 402 aa14.47□□□□□ -0.09
HDAC9-220ENST00000461409 SPDYE6P0CI01 402 aa14.47□□□□□ -0.09
HDAC9-220ENST00000461409 SPDYE2Q495Y8 402 aa14.47□□□□□ -0.09
HDAC9-220ENST00000461409 RAPGEF6Q8TEU7 1601 aa14.47□□□□□ -0.09
HDAC9-220ENST00000461409 ADGRL1O94910 1474 aa14.45□□□□□ -0.1
HDAC9-220ENST00000461409 KIF21BO75037 1637 aa14.45□□□□□ -0.1
HDAC9-220ENST00000461409 PIP4P2Q8N4L2 257 aa14.45□□□□□ -0.1
HDAC9-220ENST00000461409 RANGAP1P46060 587 aaPredicted RBP14.44□□□□□ -0.1
HDAC9-220ENST00000461409 SP7Q8TDD2 431 aaPredicted RBP14.44□□□□□ -0.1
HDAC9-220ENST00000461409 EFCAB5A4FU69 1503 aa14.44□□□□□ -0.1
HDAC9-220ENST00000461409 FHOD3Q2V2M9 1422 aa14.43□□□□□ -0.1
HDAC9-220ENST00000461409 PHLDB1Q86UU1 1377 aa14.43□□□□□ -0.1
HDAC9-220ENST00000461409 NUP153P49790 1475 aaKnown RBP14.43□□□□□ -0.1
HDAC9-220ENST00000461409 ABCA9Q8IUA7 1624 aa14.42□□□□□ -0.1
HDAC9-220ENST00000461409 ARAP3Q8WWN8 1544 aa14.41□□□□□ -0.1
HDAC9-220ENST00000461409 PITPNM1O00562 1244 aa14.4□□□□□ -0.1
HDAC9-220ENST00000461409 NEO1Q92859 1461 aa14.38□□□□□ -0.11
HDAC9-220ENST00000461409 PLEKHD1A6NEE1 506 aa14.37□□□□□ -0.11
HDAC9-220ENST00000461409 UBTFP17480 764 aaKnown RBP14.36□□□□□ -0.11
HDAC9-220ENST00000461409 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
HDAC9-220ENST00000461409 HAX1O00165 279 aa14.32□□□□□ -0.12
HDAC9-220ENST00000461409 ZNF692Q9BU19 519 aaPredicted RBP14.32□□□□□ -0.12
HDAC9-220ENST00000461409 FMN1Q68DA7 1419 aa14.32□□□□□ -0.12
HDAC9-220ENST00000461409 FXR2P51116 673 aaKnown RBP eCLIP14.31□□□□□ -0.12
HDAC9-220ENST00000461409 RAPGEF3O95398 923 aa14.3□□□□□ -0.12
HDAC9-220ENST00000461409 FANCAO15360 1455 aa14.28□□□□□ -0.12
HDAC9-220ENST00000461409 CFAP74Q9C0B2 1584 aa14.28□□□□□ -0.12
HDAC9-220ENST00000461409 CDK13Q14004 1512 aaKnown RBP14.27□□□□□ -0.12
HDAC9-220ENST00000461409 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.27□□□□□ -0.12
HDAC9-220ENST00000461409 ARHGAP35Q9NRY4 1499 aa14.27□□□□□ -0.12
HDAC9-220ENST00000461409 HECW1Q76N89 1606 aa14.26□□□□□ -0.13
HDAC9-220ENST00000461409 DENND4BO75064 1496 aaPredicted RBP14.26□□□□□ -0.13
HDAC9-220ENST00000461409 AKNAQ7Z591 1439 aa14.26□□□□□ -0.13
HDAC9-220ENST00000461409 CDK11AQ9UQ88 783 aaPredicted RBP14.26□□□□□ -0.13
HDAC9-220ENST00000461409 FRMPD1Q5SYB0 1578 aa14.26□□□□□ -0.13
HDAC9-220ENST00000461409 ATP1B4Q9UN42 357 aaPredicted RBP14.25□□□□□ -0.13
HDAC9-220ENST00000461409 TTC37Q6PGP7 1564 aa14.25□□□□□ -0.13
HDAC9-220ENST00000461409 HECW2Q9P2P5 1572 aa14.23□□□□□ -0.13
HDAC9-220ENST00000461409 ARHGEF40Q8TER5 1519 aa14.22□□□□□ -0.13
HDAC9-220ENST00000461409 ARID4BQ4LE39 1312 aaPredicted RBP14.21□□□□□ -0.13
HDAC9-220ENST00000461409 PLCH2O75038 1416 aa14.21□□□□□ -0.13
HDAC9-220ENST00000461409 RICTORQ6R327 1708 aa14.2□□□□□ -0.14
HDAC9-220ENST00000461409 ZMYM4Q5VZL5 1548 aa14.2□□□□□ -0.14
HDAC9-220ENST00000461409 MAGI2Q86UL8 1455 aa14.19□□□□□ -0.14
HDAC9-220ENST00000461409 CLIP1P30622 1438 aa14.19□□□□□ -0.14
HDAC9-220ENST00000461409 ADAMTSL3P82987 1691 aa14.19□□□□□ -0.14
HDAC9-220ENST00000461409 PTPRMP28827 1452 aa14.18□□□□□ -0.14
HDAC9-220ENST00000461409 TROQ12816 1431 aaPredicted RBP14.18□□□□□ -0.14
HDAC9-220ENST00000461409 KIF14Q15058 1648 aa14.17□□□□□ -0.14
HDAC9-220ENST00000461409 EFCAB2Q5VUJ9 269 aa14.17□□□□□ -0.14
HDAC9-220ENST00000461409 POGZQ7Z3K3 1410 aa14.16□□□□□ -0.14
HDAC9-220ENST00000461409 SCAPERQ9BY12 1400 aa14.16□□□□□ -0.14
HDAC9-220ENST00000461409 ZFYVE16Q7Z3T8 1539 aa14.16□□□□□ -0.14
HDAC9-220ENST00000461409 BCORL1Q5H9F3 1711 aa14.16□□□□□ -0.14
HDAC9-220ENST00000461409 CLEC11AQ9Y240 323 aa14.15□□□□□ -0.14
HDAC9-220ENST00000461409 MYO5CQ9NQX4 1742 aa14.15□□□□□ -0.14
HDAC9-220ENST00000461409 CASKIN1Q8WXD9 1431 aa14.15□□□□□ -0.14
HDAC9-220ENST00000461409 CCDC18Q5T9S5 1454 aa14.14□□□□□ -0.15
HDAC9-220ENST00000461409 SPDYE1Q8NFV5 336 aaPredicted RBP14.14□□□□□ -0.15
HDAC9-220ENST00000461409 MADDQ8WXG6 1647 aa14.13□□□□□ -0.15
HDAC9-220ENST00000461409 YEATS2Q9ULM3 1422 aa14.13□□□□□ -0.15
HDAC9-220ENST00000461409 ARHGAP5Q13017 1502 aa14.12□□□□□ -0.15
HDAC9-220ENST00000461409 SPDYE4A6NLX3 237 aa14.11□□□□□ -0.15
HDAC9-220ENST00000461409 PCF11O94913 1555 aaKnown RBP14.11□□□□□ -0.15
HDAC9-220ENST00000461409 ZNF518AQ6AHZ1 1483 aa14.11□□□□□ -0.15
HDAC9-220ENST00000461409 FYCO1Q9BQS8 1478 aa14.11□□□□□ -0.15
HDAC9-220ENST00000461409 C9orf84Q5VXU9 1444 aa14.08□□□□□ -0.15
HDAC9-220ENST00000461409 ATP10AO60312 1499 aa14.08□□□□□ -0.16
HDAC9-220ENST00000461409 LRRIQ1Q96JM4 1722 aa14.08□□□□□ -0.16
HDAC9-220ENST00000461409 PRKAR2AP13861 404 aaKnown RBP14.07□□□□□ -0.16
HDAC9-220ENST00000461409 RIMS1Q86UR5 1692 aaKnown RBP14.07□□□□□ -0.16
HDAC9-220ENST00000461409 ILDR1Q86SU0 546 aaPredicted RBP14.06□□□□□ -0.16
HDAC9-220ENST00000461409 KDM5CP41229 1560 aa14.05□□□□□ -0.16
HDAC9-220ENST00000461409 AFAP1Q8N556 730 aa14.05□□□□□ -0.16
HDAC9-220ENST00000461409 PREX2Q70Z35 1606 aa14.04□□□□□ -0.16
HDAC9-220ENST00000461409 MLECQ14165 292 aa14.04□□□□□ -0.16
HDAC9-220ENST00000461409 LMTK3Q96Q04 1460 aa14.04□□□□□ -0.16
HDAC9-220ENST00000461409 MYT1LQ9UL68 1186 aa14.03□□□□□ -0.16
HDAC9-220ENST00000461409 SIGLEC1Q9BZZ2 1709 aa14.03□□□□□ -0.16
HDAC9-220ENST00000461409 CDC42BPBQ9Y5S2 1711 aa14.02□□□□□ -0.16
HDAC9-220ENST00000461409 ABCC1P33527 1531 aa14.01□□□□□ -0.17
HDAC9-220ENST00000461409 ARHGEF12Q9NZN5 1544 aa14.01□□□□□ -0.17
HDAC9-220ENST00000461409 MLH3Q9UHC1 1453 aa14.01□□□□□ -0.17
HDAC9-220ENST00000461409 FER1L4A9Z1Z3 1794 aa14.01□□□□□ -0.17
HDAC9-220ENST00000461409 REREQ9P2R6 1566 aa14□□□□□ -0.17
HDAC9-220ENST00000461409 EVX2Q03828 476 aa13.99□□□□□ -0.17
HDAC9-220ENST00000461409 DIP2CQ9Y2E4 1556 aa13.99□□□□□ -0.17
HDAC9-220ENST00000461409 TRAPPC8Q9Y2L5 1435 aa13.98□□□□□ -0.17
HDAC9-220ENST00000461409 CDC42BPAQ5VT25 1732 aa13.97□□□□□ -0.17
HDAC9-220ENST00000461409 ITSN2Q9NZM3 1697 aa13.97□□□□□ -0.17
HDAC9-220ENST00000461409 MTUS2Q5JR59 1369 aa13.96□□□□□ -0.17
HDAC9-220ENST00000461409 GPATCH8Q9UKJ3 1502 aaKnown RBP13.96□□□□□ -0.17
HDAC9-220ENST00000461409 ABCA6Q8N139 1617 aa13.96□□□□□ -0.17
HDAC9-220ENST00000461409 CCNB3Q8WWL7 1395 aa13.96□□□□□ -0.18
HDAC9-220ENST00000461409 AGLP35573 1532 aa13.95□□□□□ -0.18
HDAC9-220ENST00000461409 PLEKHH2Q8IVE3 1493 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms