RNA–Protein interactions for RNA: ENST00000461004.1

RTN4-212, Transcript of reticulon 4, humanhuman

TSL 3

Gene RTN4, Length 422 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-212ENST00000461004 PKD2Q13563 968 aa11.9□□□□□ -0.5
RTN4-212ENST00000461004 CHRDL2Q6WN34 429 aa11.9□□□□□ -0.5
RTN4-212ENST00000461004 FXR2P51116 673 aaKnown RBP eCLIP11.88□□□□□ -0.51
RTN4-212ENST00000461004 FHOD3Q2V2M9 1422 aa11.87□□□□□ -0.51
RTN4-212ENST00000461004 ADCY10Q96PN6 1610 aa11.87□□□□□ -0.51
RTN4-212ENST00000461004 SAMD9Q5K651 1589 aa11.87□□□□□ -0.51
RTN4-212ENST00000461004 ZBTB47Q9UFB7 747 aaPredicted RBP11.86□□□□□ -0.51
RTN4-212ENST00000461004 PLB1Q6P1J6 1458 aa11.86□□□□□ -0.51
RTN4-212ENST00000461004 UACAQ9BZF9 1416 aa11.86□□□□□ -0.51
RTN4-212ENST00000461004 ARID3CA6NKF2 412 aa11.85□□□□□ -0.51
RTN4-212ENST00000461004 NUBP1P53384 320 aa11.85□□□□□ -0.51
RTN4-212ENST00000461004 ARHGAP35Q9NRY4 1499 aa11.83□□□□□ -0.52
RTN4-212ENST00000461004 PIP4P2Q8N4L2 257 aa11.83□□□□□ -0.52
RTN4-212ENST00000461004 NPM1P06748 294 aaKnown RBP eCLIP11.82□□□□□ -0.52
RTN4-212ENST00000461004 PRKAR2AP13861 404 aaKnown RBP11.82□□□□□ -0.52
RTN4-212ENST00000461004 ABCA8O94911 1581 aa11.81□□□□□ -0.52
RTN4-212ENST00000461004 UHRF1BP1LA0JNW5 1464 aa11.81□□□□□ -0.52
RTN4-212ENST00000461004 ABCC2Q92887 1545 aa11.8□□□□□ -0.52
RTN4-212ENST00000461004 EFCAB5A4FU69 1503 aa11.79□□□□□ -0.52
RTN4-212ENST00000461004 CLIP1P30622 1438 aa11.77□□□□□ -0.52
RTN4-212ENST00000461004 RASEFQ8IZ41 740 aa11.77□□□□□ -0.53
RTN4-212ENST00000461004 FARP1Q9Y4F1 1045 aaPredicted RBP11.77□□□□□ -0.53
RTN4-212ENST00000461004 KDM5BQ9UGL1 1544 aa11.76□□□□□ -0.53
RTN4-212ENST00000461004 ATP1B4Q9UN42 357 aaPredicted RBP11.75□□□□□ -0.53
RTN4-212ENST00000461004 CEP162Q5TB80 1403 aa11.75□□□□□ -0.53
RTN4-212ENST00000461004 ASXL2Q76L83 1435 aa11.75□□□□□ -0.53
RTN4-212ENST00000461004 ATP10BO94823 1461 aa11.75□□□□□ -0.53
RTN4-212ENST00000461004 FAM69CQ0P6D2 419 aa11.74□□□□□ -0.53
RTN4-212ENST00000461004 CIZ1Q9ULV3 898 aaPredicted RBP11.74□□□□□ -0.53
RTN4-212ENST00000461004 NUP153P49790 1475 aaKnown RBP11.74□□□□□ -0.53
RTN4-212ENST00000461004 ZCCHC11Q5TAX3 1644 aaKnown RBP11.74□□□□□ -0.53
RTN4-212ENST00000461004 MAPKBP1O60336 1514 aa11.73□□□□□ -0.53
RTN4-212ENST00000461004 RAPGEF6Q8TEU7 1601 aa11.73□□□□□ -0.53
RTN4-212ENST00000461004 KCNH8Q96L42 1107 aa11.71□□□□□ -0.53
RTN4-212ENST00000461004 ABCC10Q5T3U5 1492 aa11.7□□□□□ -0.54
RTN4-212ENST00000461004 FMN1Q68DA7 1419 aa11.7□□□□□ -0.54
RTN4-212ENST00000461004 ECM2O94769 699 aaPredicted RBP11.7□□□□□ -0.54
RTN4-212ENST00000461004 CDK13Q14004 1512 aaKnown RBP11.69□□□□□ -0.54
RTN4-212ENST00000461004 KIF13AQ9H1H9 1805 aa11.68□□□□□ -0.54
RTN4-212ENST00000461004 DIP2BQ9P265 1576 aa11.67□□□□□ -0.54
RTN4-212ENST00000461004 DCAF8Q5TAQ9 597 aa11.67□□□□□ -0.54
RTN4-212ENST00000461004 WDR7Q9Y4E6 1490 aa11.67□□□□□ -0.54
RTN4-212ENST00000461004 EPRSP07814 1512 aaKnown RBP11.66□□□□□ -0.54
RTN4-212ENST00000461004 RGL2O15211 777 aa11.66□□□□□ -0.54
RTN4-212ENST00000461004 CASKIN1Q8WXD9 1431 aa11.66□□□□□ -0.54
RTN4-212ENST00000461004 PCF11O94913 1555 aaKnown RBP11.66□□□□□ -0.54
RTN4-212ENST00000461004 GSE1Q14687 1217 aa11.65□□□□□ -0.54
RTN4-212ENST00000461004 PLEKHD1A6NEE1 506 aa11.64□□□□□ -0.55
RTN4-212ENST00000461004 FAM212AQ96EL1 285 aa11.64□□□□□ -0.55
RTN4-212ENST00000461004 LRRIQ1Q96JM4 1722 aa11.63□□□□□ -0.55
RTN4-212ENST00000461004 HECW1Q76N89 1606 aa11.63□□□□□ -0.55
RTN4-212ENST00000461004 GLI2P10070 1586 aa11.61□□□□□ -0.55
RTN4-212ENST00000461004 TSPOAP1O95153 1857 aa11.61□□□□□ -0.55
RTN4-212ENST00000461004 FYCO1Q9BQS8 1478 aa11.6□□□□□ -0.55
RTN4-212ENST00000461004 RNF25Q96BH1 459 aaPredicted RBP11.6□□□□□ -0.55
RTN4-212ENST00000461004 TSPYL2Q9H2G4 693 aaPredicted RBP11.6□□□□□ -0.55
RTN4-212ENST00000461004 MAGI3Q5TCQ9 1506 aa11.59□□□□□ -0.55
RTN4-212ENST00000461004 CD109Q6YHK3 1445 aa11.58□□□□□ -0.56
RTN4-212ENST00000461004 VPS8Q8N3P4 1428 aa11.58□□□□□ -0.56
RTN4-212ENST00000461004 PPRC1Q5VV67 1664 aaKnown RBP11.57□□□□□ -0.56
RTN4-212ENST00000461004 MAP3K4Q9Y6R4 1608 aa11.57□□□□□ -0.56
RTN4-212ENST00000461004 CDK11AQ9UQ88 783 aaPredicted RBP11.56□□□□□ -0.56
RTN4-212ENST00000461004 TROQ12816 1431 aaPredicted RBP11.55□□□□□ -0.56
RTN4-212ENST00000461004 PYGBP11216 843 aa11.55□□□□□ -0.56
RTN4-212ENST00000461004 CCDC18Q5T9S5 1454 aa11.55□□□□□ -0.56
RTN4-212ENST00000461004 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.55□□□□□ -0.56
RTN4-212ENST00000461004 KIF14Q15058 1648 aa11.53□□□□□ -0.56
RTN4-212ENST00000461004 COL17A1Q9UMD9 1497 aaPredicted RBP11.53□□□□□ -0.56
RTN4-212ENST00000461004 CHRM1P11229 460 aaPredicted RBP11.53□□□□□ -0.56
RTN4-212ENST00000461004 KANK4Q5T7N3 995 aaPredicted RBP11.53□□□□□ -0.56
RTN4-212ENST00000461004 CCDC61Q9Y6R9 512 aa11.53□□□□□ -0.56
RTN4-212ENST00000461004 TTC37Q6PGP7 1564 aa11.53□□□□□ -0.56
RTN4-212ENST00000461004 ABCA9Q8IUA7 1624 aa11.53□□□□□ -0.56
RTN4-212ENST00000461004 CFAP43Q8NDM7 1665 aa11.52□□□□□ -0.57
RTN4-212ENST00000461004 MTUS2Q5JR59 1369 aa11.49□□□□□ -0.57
RTN4-212ENST00000461004 CD44P16070 742 aaKnown RBP11.48□□□□□ -0.57
RTN4-212ENST00000461004 PLCH2O75038 1416 aa11.48□□□□□ -0.57
RTN4-212ENST00000461004 TEX14Q8IWB6 1497 aa11.48□□□□□ -0.57
RTN4-212ENST00000461004 TIAM1Q13009 1591 aa11.48□□□□□ -0.57
RTN4-212ENST00000461004 C19orf67A6NJJ6 358 aa11.47□□□□□ -0.57
RTN4-212ENST00000461004 RAPGEF3O95398 923 aa11.46□□□□□ -0.57
RTN4-212ENST00000461004 KDM6BO15054 1643 aa11.46□□□□□ -0.58
RTN4-212ENST00000461004 LRRC9Q6ZRR7 1453 aa11.45□□□□□ -0.58
RTN4-212ENST00000461004 RIOK3O14730 519 aaKnown RBP11.45□□□□□ -0.58
RTN4-212ENST00000461004 PPARGC1BQ86YN6 1023 aaKnown RBP11.45□□□□□ -0.58
RTN4-212ENST00000461004 FANCAO15360 1455 aa11.44□□□□□ -0.58
RTN4-212ENST00000461004 AKNAQ7Z591 1439 aa11.44□□□□□ -0.58
RTN4-212ENST00000461004 EFCAB2Q5VUJ9 269 aa11.44□□□□□ -0.58
RTN4-212ENST00000461004 ZRANB1Q9UGI0 708 aa11.44□□□□□ -0.58
RTN4-212ENST00000461004 GPATCH8Q9UKJ3 1502 aaKnown RBP11.44□□□□□ -0.58
RTN4-212ENST00000461004 ZNF777Q9ULD5 760 aaPredicted RBP11.43□□□□□ -0.58
RTN4-212ENST00000461004 EHBP1L1Q8N3D4 1523 aa11.43□□□□□ -0.58
RTN4-212ENST00000461004 NEO1Q92859 1461 aa11.43□□□□□ -0.58
RTN4-212ENST00000461004 CCNB3Q8WWL7 1395 aa11.42□□□□□ -0.58
RTN4-212ENST00000461004 ZNF644Q9H582 1327 aaPredicted RBP11.42□□□□□ -0.58
RTN4-212ENST00000461004 MAP3K1Q13233 1512 aa11.42□□□□□ -0.58
RTN4-212ENST00000461004 PAK3O75914 559 aaPredicted RBP11.42□□□□□ -0.58
RTN4-212ENST00000461004 PHF12Q96QT6 1004 aa11.42□□□□□ -0.58
RTN4-212ENST00000461004 NCOA2Q15596 1464 aa11.42□□□□□ -0.58
RTN4-212ENST00000461004 ARHGAP5Q13017 1502 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms