RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.9□□□□□ -0.18
VPS50-207ENST00000458530 ZBTB22O15209 634 aa13.9□□□□□ -0.18
VPS50-207ENST00000458530 APLP2Q06481 763 aa13.9□□□□□ -0.18
VPS50-207ENST00000458530 HNRNPUL2Q1KMD3 747 aaKnown RBP13.9□□□□□ -0.18
VPS50-207ENST00000458530 LMTK3Q96Q04 1460 aa13.9□□□□□ -0.18
VPS50-207ENST00000458530 PCF11O94913 1555 aaKnown RBP13.9□□□□□ -0.18
VPS50-207ENST00000458530 KCNH8Q96L42 1107 aa13.89□□□□□ -0.19
VPS50-207ENST00000458530 ABCA9Q8IUA7 1624 aa13.89□□□□□ -0.19
VPS50-207ENST00000458530 FMN1Q68DA7 1419 aa13.88□□□□□ -0.19
VPS50-207ENST00000458530 ATP10BO94823 1461 aa13.87□□□□□ -0.19
VPS50-207ENST00000458530 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
VPS50-207ENST00000458530 FRMPD1Q5SYB0 1578 aa13.87□□□□□ -0.19
VPS50-207ENST00000458530 BCORL1Q5H9F3 1711 aa13.87□□□□□ -0.19
VPS50-207ENST00000458530 NEO1Q92859 1461 aa13.87□□□□□ -0.19
VPS50-207ENST00000458530 FYCO1Q9BQS8 1478 aa13.85□□□□□ -0.19
VPS50-207ENST00000458530 TRIM26Q12899 539 aaPredicted RBP13.84□□□□□ -0.19
VPS50-207ENST00000458530 MAP3K1Q13233 1512 aa13.84□□□□□ -0.19
VPS50-207ENST00000458530 MADDQ8WXG6 1647 aa13.83□□□□□ -0.2
VPS50-207ENST00000458530 ABCB7O75027 752 aa13.83□□□□□ -0.2
VPS50-207ENST00000458530 FHOD3Q2V2M9 1422 aa13.82□□□□□ -0.2
VPS50-207ENST00000458530 RAPGEF3O95398 923 aa13.82□□□□□ -0.2
VPS50-207ENST00000458530 CASKIN1Q8WXD9 1431 aa13.8□□□□□ -0.2
VPS50-207ENST00000458530 TIAM1Q13009 1591 aa13.79□□□□□ -0.2
VPS50-207ENST00000458530 ZNF219Q9P2Y4 722 aaPredicted RBP13.79□□□□□ -0.2
VPS50-207ENST00000458530 ARHGEF40Q8TER5 1519 aa13.79□□□□□ -0.2
VPS50-207ENST00000458530 HECW1Q76N89 1606 aa13.79□□□□□ -0.2
VPS50-207ENST00000458530 CCDC18Q5T9S5 1454 aa13.74□□□□□ -0.21
VPS50-207ENST00000458530 RICTORQ6R327 1708 aa13.74□□□□□ -0.21
VPS50-207ENST00000458530 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
VPS50-207ENST00000458530 ZMYM4Q5VZL5 1548 aa13.74□□□□□ -0.21
VPS50-207ENST00000458530 RIMS1Q86UR5 1692 aaKnown RBP13.73□□□□□ -0.21
VPS50-207ENST00000458530 CERKQ8TCT0 537 aa13.72□□□□□ -0.21
VPS50-207ENST00000458530 PCGF6Q9BYE7 350 aa13.72□□□□□ -0.21
VPS50-207ENST00000458530 SIGLEC1Q9BZZ2 1709 aa13.72□□□□□ -0.21
VPS50-207ENST00000458530 DENND4BO75064 1496 aaPredicted RBP13.72□□□□□ -0.21
VPS50-207ENST00000458530 NUP153P49790 1475 aaKnown RBP13.72□□□□□ -0.21
VPS50-207ENST00000458530 RAPGEF6Q8TEU7 1601 aa13.72□□□□□ -0.21
VPS50-207ENST00000458530 HSPA2P54652 639 aa13.71□□□□□ -0.21
VPS50-207ENST00000458530 ATF5Q9Y2D1 282 aaPredicted RBP13.71□□□□□ -0.21
VPS50-207ENST00000458530 LRRIQ1Q96JM4 1722 aa13.7□□□□□ -0.22
VPS50-207ENST00000458530 ARID3CA6NKF2 412 aa13.7□□□□□ -0.22
VPS50-207ENST00000458530 ARID4BQ4LE39 1312 aaPredicted RBP13.69□□□□□ -0.22
VPS50-207ENST00000458530 AKNAQ7Z591 1439 aa13.69□□□□□ -0.22
VPS50-207ENST00000458530 FANCAO15360 1455 aa13.68□□□□□ -0.22
VPS50-207ENST00000458530 MAGI2Q86UL8 1455 aa13.68□□□□□ -0.22
VPS50-207ENST00000458530 TTC37Q6PGP7 1564 aa13.68□□□□□ -0.22
VPS50-207ENST00000458530 PPARGC1BQ86YN6 1023 aaKnown RBP13.68□□□□□ -0.22
VPS50-207ENST00000458530 LRRC9Q6ZRR7 1453 aa13.67□□□□□ -0.22
VPS50-207ENST00000458530 POGZQ7Z3K3 1410 aa13.67□□□□□ -0.22
VPS50-207ENST00000458530 YEATS2Q9ULM3 1422 aa13.67□□□□□ -0.22
VPS50-207ENST00000458530 EHBP1L1Q8N3D4 1523 aa13.66□□□□□ -0.22
VPS50-207ENST00000458530 ILDR2Q71H61 639 aa13.66□□□□□ -0.22
VPS50-207ENST00000458530 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.65□□□□□ -0.22
VPS50-207ENST00000458530 SUPT6HQ7KZ85 1726 aaKnown RBP13.65□□□□□ -0.22
VPS50-207ENST00000458530 SOCS7O14512 581 aa13.65□□□□□ -0.22
VPS50-207ENST00000458530 ATP1B4Q9UN42 357 aaPredicted RBP13.65□□□□□ -0.22
VPS50-207ENST00000458530 CFAP74Q9C0B2 1584 aa13.65□□□□□ -0.22
VPS50-207ENST00000458530 ZFYVE16Q7Z3T8 1539 aa13.64□□□□□ -0.23
VPS50-207ENST00000458530 ARHGEF12Q9NZN5 1544 aa13.64□□□□□ -0.23
VPS50-207ENST00000458530 MTUS2Q5JR59 1369 aa13.61□□□□□ -0.23
VPS50-207ENST00000458530 FER1L4A9Z1Z3 1794 aa13.6□□□□□ -0.23
VPS50-207ENST00000458530 STRCQ7RTU9 1775 aa13.59□□□□□ -0.23
VPS50-207ENST00000458530 PREX1Q8TCU6 1659 aa13.59□□□□□ -0.23
VPS50-207ENST00000458530 DISP3Q9P2K9 1392 aa13.58□□□□□ -0.23
VPS50-207ENST00000458530 PLEKHD1A6NEE1 506 aa13.58□□□□□ -0.24
VPS50-207ENST00000458530 POLA2Q14181 598 aa13.58□□□□□ -0.24
VPS50-207ENST00000458530 KANK4Q5T7N3 995 aaPredicted RBP13.58□□□□□ -0.24
VPS50-207ENST00000458530 PLCH2O75038 1416 aa13.57□□□□□ -0.24
VPS50-207ENST00000458530 RRBP1Q9P2E9 1410 aaKnown RBP13.57□□□□□ -0.24
VPS50-207ENST00000458530 ATP10AO60312 1499 aa13.57□□□□□ -0.24
VPS50-207ENST00000458530 CDK13Q14004 1512 aaKnown RBP13.56□□□□□ -0.24
VPS50-207ENST00000458530 CDK11AQ9UQ88 783 aaPredicted RBP13.56□□□□□ -0.24
VPS50-207ENST00000458530 C9orf84Q5VXU9 1444 aa13.56□□□□□ -0.24
VPS50-207ENST00000458530 SCAPERQ9BY12 1400 aa13.56□□□□□ -0.24
VPS50-207ENST00000458530 PTPRTO14522 1441 aa13.54□□□□□ -0.24
VPS50-207ENST00000458530 ITSN2Q9NZM3 1697 aa13.53□□□□□ -0.24
VPS50-207ENST00000458530 CCNB3Q8WWL7 1395 aa13.52□□□□□ -0.25
VPS50-207ENST00000458530 LTBP4Q8N2S1 1624 aa13.52□□□□□ -0.25
VPS50-207ENST00000458530 SETD1BQ9UPS6 1966 aaKnown RBP13.51□□□□□ -0.25
VPS50-207ENST00000458530 KDM5CP41229 1560 aa13.51□□□□□ -0.25
VPS50-207ENST00000458530 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
VPS50-207ENST00000458530 NCOA2Q15596 1464 aa13.51□□□□□ -0.25
VPS50-207ENST00000458530 IQSEC2Q5JU85 1478 aa13.51□□□□□ -0.25
VPS50-207ENST00000458530 MLECQ14165 292 aa13.51□□□□□ -0.25
VPS50-207ENST00000458530 REREQ9P2R6 1566 aa13.5□□□□□ -0.25
VPS50-207ENST00000458530 UHRF1BP1Q6BDS2 1440 aa13.5□□□□□ -0.25
VPS50-207ENST00000458530 CEBPAP49715 358 aaPredicted RBP13.5□□□□□ -0.25
VPS50-207ENST00000458530 KIF14Q15058 1648 aa13.49□□□□□ -0.25
VPS50-207ENST00000458530 TROQ12816 1431 aaPredicted RBP13.48□□□□□ -0.25
VPS50-207ENST00000458530 MYOM3Q5VTT5 1437 aa13.48□□□□□ -0.25
VPS50-207ENST00000458530 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS50-207ENST00000458530 ZNF518AQ6AHZ1 1483 aa13.48□□□□□ -0.25
VPS50-207ENST00000458530 FGD6Q6ZV73 1430 aa13.47□□□□□ -0.25
VPS50-207ENST00000458530 DIP2CQ9Y2E4 1556 aa13.45□□□□□ -0.26
VPS50-207ENST00000458530 AGLP35573 1532 aa13.45□□□□□ -0.26
VPS50-207ENST00000458530 EFCAB2Q5VUJ9 269 aa13.45□□□□□ -0.26
VPS50-207ENST00000458530 PTPN23Q9H3S7 1636 aa13.45□□□□□ -0.26
VPS50-207ENST00000458530 NCOA1Q15788 1441 aa13.44□□□□□ -0.26
VPS50-207ENST00000458530 MIA2Q96PC5 1412 aa13.44□□□□□ -0.26
VPS50-207ENST00000458530 MLH3Q9UHC1 1453 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms