RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PREX2Q70Z35 1606 aa29.67■■■□□ 2.34
USP39-209ENST00000458268 VPS8Q8N3P4 1428 aa29.67■■■□□ 2.34
USP39-209ENST00000458268 SCAPERQ9BY12 1400 aa29.67■■■□□ 2.34
USP39-209ENST00000458268 CDC42BPAQ5VT25 1732 aa29.67■■■□□ 2.34
USP39-209ENST00000458268 KDM4FA0A1W2PPD8 638 aa29.63■■■□□ 2.33
USP39-209ENST00000458268 EHBP1L1Q8N3D4 1523 aa29.62■■■□□ 2.33
USP39-209ENST00000458268 ZNF777Q9ULD5 760 aaPredicted RBP29.61■■■□□ 2.33
USP39-209ENST00000458268 TIAM1Q13009 1591 aa29.58■■■□□ 2.33
USP39-209ENST00000458268 POGZQ7Z3K3 1410 aa29.57■■■□□ 2.32
USP39-209ENST00000458268 MYT1LQ9UL68 1186 aa29.57■■■□□ 2.32
USP39-209ENST00000458268 CCNB3Q8WWL7 1395 aa29.56■■■□□ 2.32
USP39-209ENST00000458268 ARID4BQ4LE39 1312 aaPredicted RBP29.55■■■□□ 2.32
USP39-209ENST00000458268 ARHGEF40Q8TER5 1519 aa29.55■■■□□ 2.32
USP39-209ENST00000458268 ZFYVE16Q7Z3T8 1539 aa29.53■■■□□ 2.32
USP39-209ENST00000458268 ZMYM4Q5VZL5 1548 aa29.52■■■□□ 2.32
USP39-209ENST00000458268 GPATCH8Q9UKJ3 1502 aaKnown RBP29.51■■■□□ 2.32
USP39-209ENST00000458268 ITSN2Q9NZM3 1697 aa29.51■■■□□ 2.31
USP39-209ENST00000458268 SUPT6HQ7KZ85 1726 aaKnown RBP29.51■■■□□ 2.31
USP39-209ENST00000458268 YEATS2Q9ULM3 1422 aa29.5■■■□□ 2.31
USP39-209ENST00000458268 ABCC1P33527 1531 aa29.5■■■□□ 2.31
USP39-209ENST00000458268 CFDP1Q9UEE9 299 aaPredicted RBP29.48■■■□□ 2.31
USP39-209ENST00000458268 ZNF518AQ6AHZ1 1483 aa29.48■■■□□ 2.31
USP39-209ENST00000458268 SAMD9LQ8IVG5 1584 aa29.47■■■□□ 2.31
USP39-209ENST00000458268 AFAP1Q8N556 730 aa29.47■■■□□ 2.31
USP39-209ENST00000458268 APLP2Q06481 763 aa29.44■■■□□ 2.3
USP39-209ENST00000458268 ARHGEF12Q9NZN5 1544 aa29.44■■■□□ 2.3
USP39-209ENST00000458268 NCOA2Q15596 1464 aa29.43■■■□□ 2.3
USP39-209ENST00000458268 SYCP2Q9BX26 1530 aa29.43■■■□□ 2.3
USP39-209ENST00000458268 TRAPPC8Q9Y2L5 1435 aa29.43■■■□□ 2.3
USP39-209ENST00000458268 LRRC9Q6ZRR7 1453 aa29.42■■■□□ 2.3
USP39-209ENST00000458268 MAGI2Q86UL8 1455 aa29.42■■■□□ 2.3
USP39-209ENST00000458268 HECW2Q9P2P5 1572 aa29.41■■■□□ 2.3
USP39-209ENST00000458268 KDM5CP41229 1560 aa29.39■■■□□ 2.3
USP39-209ENST00000458268 HNRNPMP52272 730 aaKnown RBP eCLIP29.39■■■□□ 2.3
USP39-209ENST00000458268 KANK4Q5T7N3 995 aaPredicted RBP29.38■■■□□ 2.29
USP39-209ENST00000458268 BCORL1Q5H9F3 1711 aa29.37■■■□□ 2.29
USP39-209ENST00000458268 SIGLEC1Q9BZZ2 1709 aa29.37■■■□□ 2.29
USP39-209ENST00000458268 MLECQ14165 292 aa29.36■■■□□ 2.29
USP39-209ENST00000458268 ZNF644Q9H582 1327 aaPredicted RBP29.34■■■□□ 2.29
USP39-209ENST00000458268 ATP10AO60312 1499 aa29.33■■■□□ 2.29
USP39-209ENST00000458268 ABCA6Q8N139 1617 aa29.32■■■□□ 2.28
USP39-209ENST00000458268 MAP3K1Q13233 1512 aa29.32■■■□□ 2.28
USP39-209ENST00000458268 PLEKHH2Q8IVE3 1493 aa29.32■■■□□ 2.28
USP39-209ENST00000458268 MADDQ8WXG6 1647 aa29.31■■■□□ 2.28
USP39-209ENST00000458268 C9orf84Q5VXU9 1444 aa29.31■■■□□ 2.28
USP39-209ENST00000458268 ADAMTSL3P82987 1691 aa29.31■■■□□ 2.28
USP39-209ENST00000458268 DIP2CQ9Y2E4 1556 aa29.3■■■□□ 2.28
USP39-209ENST00000458268 PLPPR3Q6T4P5 718 aa29.28■■■□□ 2.28
USP39-209ENST00000458268 KIDINS220Q9ULH0 1771 aa29.28■■■□□ 2.28
USP39-209ENST00000458268 RIMS1Q86UR5 1692 aaKnown RBP29.28■■■□□ 2.28
USP39-209ENST00000458268 SPAG9O60271 1321 aaKnown RBP29.26■■■□□ 2.27
USP39-209ENST00000458268 MLH3Q9UHC1 1453 aa29.26■■■□□ 2.27
USP39-209ENST00000458268 CAMSAP2Q08AD1 1489 aa29.25■■■□□ 2.27
USP39-209ENST00000458268 KIAA1107Q9UPP5 1409 aa29.23■■■□□ 2.27
USP39-209ENST00000458268 FER1L4A9Z1Z3 1794 aa29.21■■■□□ 2.27
USP39-209ENST00000458268 ATP7AQ04656 1500 aa29.2■■■□□ 2.27
USP39-209ENST00000458268 PTPRMP28827 1452 aa29.18■■■□□ 2.26
USP39-209ENST00000458268 INO80Q9ULG1 1556 aaPredicted RBP29.18■■■□□ 2.26
USP39-209ENST00000458268 MYOM3Q5VTT5 1437 aa29.15■■■□□ 2.26
USP39-209ENST00000458268 MBD5Q9P267 1494 aa29.14■■■□□ 2.26
USP39-209ENST00000458268 CCDC141Q6ZP82 1450 aa29.12■■■□□ 2.25
USP39-209ENST00000458268 REREQ9P2R6 1566 aa29.12■■■□□ 2.25
USP39-209ENST00000458268 ADGBQ8N7X0 1667 aa29.06■■■□□ 2.24
USP39-209ENST00000458268 ARHGEF5Q12774 1597 aa29.05■■■□□ 2.24
USP39-209ENST00000458268 A2MP01023 1474 aa29.04■■■□□ 2.24
USP39-209ENST00000458268 MIA2Q96PC5 1412 aa29.04■■■□□ 2.24
USP39-209ENST00000458268 ESF1Q9H501 851 aaKnown RBP29.04■■■□□ 2.24
USP39-209ENST00000458268 PTPN23Q9H3S7 1636 aa29.03■■■□□ 2.24
USP39-209ENST00000458268 PPARGC1BQ86YN6 1023 aaKnown RBP29.03■■■□□ 2.24
USP39-209ENST00000458268 AGLP35573 1532 aa29.03■■■□□ 2.24
USP39-209ENST00000458268 TSPY4P0CV99 314 aa29.01■■■□□ 2.23
USP39-209ENST00000458268 TSPY10P0CW01 314 aa29.01■■■□□ 2.23
USP39-209ENST00000458268 RSPH4AQ5TD94 716 aa28.99■■■□□ 2.23
USP39-209ENST00000458268 RTEL1-TNFRSF6BF6WH68 1400 aa28.98■■■□□ 2.23
USP39-209ENST00000458268 PLXNC1O60486 1568 aa28.97■■■□□ 2.23
USP39-209ENST00000458268 FGD6Q6ZV73 1430 aa28.97■■■□□ 2.23
USP39-209ENST00000458268 CEBPAP49715 358 aaPredicted RBP28.97■■■□□ 2.23
USP39-209ENST00000458268 GGT6Q6P531 493 aa28.95■■■□□ 2.22
USP39-209ENST00000458268 FAM50AQ14320 339 aaKnown RBP28.91■■■□□ 2.22
USP39-209ENST00000458268 CROCC2H7BZ55 1655 aa28.9■■■□□ 2.22
USP39-209ENST00000458268 C3P01024 1663 aa28.89■■■□□ 2.22
USP39-209ENST00000458268 CLTCQ00610 1675 aaKnown RBP28.89■■■□□ 2.22
USP39-209ENST00000458268 MAST1Q9Y2H9 1570 aa28.88■■■□□ 2.21
USP39-209ENST00000458268 DHX29Q7Z478 1369 aaKnown RBP28.88■■■□□ 2.21
USP39-209ENST00000458268 KIF3BO15066 747 aa28.86■■■□□ 2.21
USP39-209ENST00000458268 DNMT1P26358 1616 aaKnown RBP28.86■■■□□ 2.21
USP39-209ENST00000458268 TCOF1Q13428 1488 aaKnown RBP28.85■■■□□ 2.21
USP39-209ENST00000458268 DAPK1P53355 1430 aa28.84■■■□□ 2.21
USP39-209ENST00000458268 CHIC2Q9UKJ5 165 aa28.83■■■□□ 2.21
USP39-209ENST00000458268 ABCC5O15440 1437 aa28.83■■■□□ 2.21
USP39-209ENST00000458268 CNTLNQ9NXG0 1405 aa28.82■■■□□ 2.2
USP39-209ENST00000458268 LMTK3Q96Q04 1460 aa28.8■■■□□ 2.2
USP39-209ENST00000458268 PREX1Q8TCU6 1659 aa28.8■■■□□ 2.2
USP39-209ENST00000458268 MROH2AA6NES4 1674 aa28.79■■■□□ 2.2
USP39-209ENST00000458268 HSPA2P54652 639 aa28.78■■■□□ 2.2
USP39-209ENST00000458268 SHANK2Q9UPX8 1470 aa28.78■■■□□ 2.2
USP39-209ENST00000458268 RRP7BPQ9NSQ0 103 aa28.77■■■□□ 2.2
USP39-209ENST00000458268 KIF15Q9NS87 1388 aa28.75■■■□□ 2.19
USP39-209ENST00000458268 ZMYM3Q14202 1370 aa28.74■■■□□ 2.19
USP39-209ENST00000458268 DUOX2Q9NRD8 1548 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms