RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-208ENST00000457745 MYOM3Q5VTT5 1437 aa13.43□□□□□ -0.26
RIF1-208ENST00000457745 TTC37Q6PGP7 1564 aa13.43□□□□□ -0.26
RIF1-208ENST00000457745 CDC42BPAQ5VT25 1732 aa13.42□□□□□ -0.26
RIF1-208ENST00000457745 PTPN23Q9H3S7 1636 aa13.41□□□□□ -0.26
RIF1-208ENST00000457745 PTPRKQ15262 1439 aa13.4□□□□□ -0.26
RIF1-208ENST00000457745 GPATCH8Q9UKJ3 1502 aaKnown RBP13.39□□□□□ -0.27
RIF1-208ENST00000457745 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.39□□□□□ -0.27
RIF1-208ENST00000457745 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.39□□□□□ -0.27
RIF1-208ENST00000457745 TCOF1Q13428 1488 aaKnown RBP13.38□□□□□ -0.27
RIF1-208ENST00000457745 CDC42BPBQ9Y5S2 1711 aa13.37□□□□□ -0.27
RIF1-208ENST00000457745 ZNF644Q9H582 1327 aaPredicted RBP13.37□□□□□ -0.27
RIF1-208ENST00000457745 ITSN2Q9NZM3 1697 aa13.34□□□□□ -0.27
RIF1-208ENST00000457745 PLEKHD1A6NEE1 506 aa13.34□□□□□ -0.27
RIF1-208ENST00000457745 ITGAEP38570 1179 aa13.34□□□□□ -0.27
RIF1-208ENST00000457745 FAM50AQ14320 339 aaKnown RBP13.34□□□□□ -0.27
RIF1-208ENST00000457745 PREX2Q70Z35 1606 aa13.34□□□□□ -0.27
RIF1-208ENST00000457745 ASXL2Q76L83 1435 aa13.33□□□□□ -0.28
RIF1-208ENST00000457745 WDR7Q9Y4E6 1490 aa13.33□□□□□ -0.28
RIF1-208ENST00000457745 CAMSAP2Q08AD1 1489 aa13.32□□□□□ -0.28
RIF1-208ENST00000457745 CYB5RLQ6IPT4 315 aa13.32□□□□□ -0.28
RIF1-208ENST00000457745 SAMD9LQ8IVG5 1584 aa13.32□□□□□ -0.28
RIF1-208ENST00000457745 CDK11AQ9UQ88 783 aaPredicted RBP13.31□□□□□ -0.28
RIF1-208ENST00000457745 MIA2Q96PC5 1412 aa13.3□□□□□ -0.28
RIF1-208ENST00000457745 KCNH8Q96L42 1107 aa13.3□□□□□ -0.28
RIF1-208ENST00000457745 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.3□□□□□ -0.28
RIF1-208ENST00000457745 MYO5CQ9NQX4 1742 aa13.3□□□□□ -0.28
RIF1-208ENST00000457745 DNMT1P26358 1616 aaKnown RBP13.28□□□□□ -0.28
RIF1-208ENST00000457745 KDM6BO15054 1643 aa13.28□□□□□ -0.28
RIF1-208ENST00000457745 ABCA9Q8IUA7 1624 aa13.28□□□□□ -0.28
RIF1-208ENST00000457745 ABCC5O15440 1437 aa13.27□□□□□ -0.29
RIF1-208ENST00000457745 CROCC2H7BZ55 1655 aa13.27□□□□□ -0.29
RIF1-208ENST00000457745 ARHGEF12Q9NZN5 1544 aa13.26□□□□□ -0.29
RIF1-208ENST00000457745 DAPK1P53355 1430 aa13.25□□□□□ -0.29
RIF1-208ENST00000457745 CFDP1Q9UEE9 299 aaPredicted RBP13.24□□□□□ -0.29
RIF1-208ENST00000457745 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
RIF1-208ENST00000457745 ARHGAP5Q13017 1502 aa13.23□□□□□ -0.29
RIF1-208ENST00000457745 MBD5Q9P267 1494 aa13.23□□□□□ -0.29
RIF1-208ENST00000457745 ZNF777Q9ULD5 760 aaPredicted RBP13.23□□□□□ -0.29
RIF1-208ENST00000457745 SYCP2Q9BX26 1530 aa13.23□□□□□ -0.29
RIF1-208ENST00000457745 PLCH2O75038 1416 aa13.22□□□□□ -0.29
RIF1-208ENST00000457745 GCC2Q8IWJ2 1684 aa13.21□□□□□ -0.29
RIF1-208ENST00000457745 SLC4A2P04920 1241 aa13.21□□□□□ -0.29
RIF1-208ENST00000457745 CHIC2Q9UKJ5 165 aa13.21□□□□□ -0.29
RIF1-208ENST00000457745 RAB3GAP2Q9H2M9 1393 aa13.2□□□□□ -0.3
RIF1-208ENST00000457745 ABCC1P33527 1531 aa13.2□□□□□ -0.3
RIF1-208ENST00000457745 NAIPQ13075 1403 aa13.2□□□□□ -0.3
RIF1-208ENST00000457745 ARHGEF5Q12774 1597 aa13.2□□□□□ -0.3
RIF1-208ENST00000457745 DIP2BQ9P265 1576 aa13.2□□□□□ -0.3
RIF1-208ENST00000457745 ADGBQ8N7X0 1667 aa13.18□□□□□ -0.3
RIF1-208ENST00000457745 HNRNPMP52272 730 aaKnown RBP eCLIP13.18□□□□□ -0.3
RIF1-208ENST00000457745 AKNAQ7Z591 1439 aa13.18□□□□□ -0.3
RIF1-208ENST00000457745 MAP3K4Q9Y6R4 1608 aa13.17□□□□□ -0.3
RIF1-208ENST00000457745 HFM1A2PYH4 1435 aa13.17□□□□□ -0.3
RIF1-208ENST00000457745 SETD5Q9C0A6 1442 aa13.17□□□□□ -0.3
RIF1-208ENST00000457745 TRAPPC8Q9Y2L5 1435 aa13.17□□□□□ -0.3
RIF1-208ENST00000457745 RRP7BPQ9NSQ0 103 aa13.17□□□□□ -0.3
RIF1-208ENST00000457745 PPRC1Q5VV67 1664 aaKnown RBP13.17□□□□□ -0.3
RIF1-208ENST00000457745 ARAP3Q8WWN8 1544 aa13.17□□□□□ -0.3
RIF1-208ENST00000457745 KIF13AQ9H1H9 1805 aa13.16□□□□□ -0.3
RIF1-208ENST00000457745 HRCP23327 699 aa13.16□□□□□ -0.3
RIF1-208ENST00000457745 DHX57Q6P158 1386 aaKnown RBP13.16□□□□□ -0.3
RIF1-208ENST00000457745 NPM1P06748 294 aaKnown RBP eCLIP13.15□□□□□ -0.3
RIF1-208ENST00000457745 ADGRL2O95490 1459 aa13.15□□□□□ -0.3
RIF1-208ENST00000457745 FANCAO15360 1455 aa13.14□□□□□ -0.31
RIF1-208ENST00000457745 GLI2P10070 1586 aa13.14□□□□□ -0.31
RIF1-208ENST00000457745 C9orf84Q5VXU9 1444 aa13.13□□□□□ -0.31
RIF1-208ENST00000457745 CCDC141Q6ZP82 1450 aa13.13□□□□□ -0.31
RIF1-208ENST00000457745 SHANK2Q9UPX8 1470 aa13.13□□□□□ -0.31
RIF1-208ENST00000457745 MAST1Q9Y2H9 1570 aa13.12□□□□□ -0.31
RIF1-208ENST00000457745 DENND4BO75064 1496 aaPredicted RBP13.12□□□□□ -0.31
RIF1-208ENST00000457745 CD109Q6YHK3 1445 aa13.12□□□□□ -0.31
RIF1-208ENST00000457745 TSPOAP1O95153 1857 aa13.11□□□□□ -0.31
RIF1-208ENST00000457745 NCOA1Q15788 1441 aa13.11□□□□□ -0.31
RIF1-208ENST00000457745 KIAA1107Q9UPP5 1409 aa13.11□□□□□ -0.31
RIF1-208ENST00000457745 ROCK1Q13464 1354 aa13.1□□□□□ -0.31
RIF1-208ENST00000457745 EFCAB2Q5VUJ9 269 aa13.09□□□□□ -0.31
RIF1-208ENST00000457745 ZFYVE16Q7Z3T8 1539 aa13.08□□□□□ -0.31
RIF1-208ENST00000457745 INO80Q9ULG1 1556 aaPredicted RBP13.08□□□□□ -0.32
RIF1-208ENST00000457745 CCER1Q8TC90 406 aaPredicted RBP13.08□□□□□ -0.32
RIF1-208ENST00000457745 ADGRL1O94910 1474 aa13.08□□□□□ -0.32
RIF1-208ENST00000457745 FRMPD1Q5SYB0 1578 aa13.07□□□□□ -0.32
RIF1-208ENST00000457745 SCAPERQ9BY12 1400 aa13.07□□□□□ -0.32
RIF1-208ENST00000457745 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
RIF1-208ENST00000457745 U3KPZ7 1027 aaPredicted RBP13.07□□□□□ -0.32
RIF1-208ENST00000457745 PLEKHH2Q8IVE3 1493 aa13.07□□□□□ -0.32
RIF1-208ENST00000457745 PLXNC1O60486 1568 aa13.07□□□□□ -0.32
RIF1-208ENST00000457745 POTEHQ6S545 545 aa13.06□□□□□ -0.32
RIF1-208ENST00000457745 AFAP1Q8N556 730 aa13.06□□□□□ -0.32
RIF1-208ENST00000457745 FAM69CQ0P6D2 419 aa13.05□□□□□ -0.32
RIF1-208ENST00000457745 KIDINS220Q9ULH0 1771 aa13.04□□□□□ -0.32
RIF1-208ENST00000457745 CFAP74Q9C0B2 1584 aa13.04□□□□□ -0.32
RIF1-208ENST00000457745 FOXD4L1Q9NU39 408 aa13.04□□□□□ -0.32
RIF1-208ENST00000457745 RICTORQ6R327 1708 aa13.04□□□□□ -0.32
RIF1-208ENST00000457745 KIF15Q9NS87 1388 aa13.04□□□□□ -0.32
RIF1-208ENST00000457745 KDM5CP41229 1560 aa13.03□□□□□ -0.32
RIF1-208ENST00000457745 POGZQ7Z3K3 1410 aa13.03□□□□□ -0.32
RIF1-208ENST00000457745 PZPP20742 1482 aa13.03□□□□□ -0.32
RIF1-208ENST00000457745 ATP7AQ04656 1500 aa13.03□□□□□ -0.32
RIF1-208ENST00000457745 ANKRD30AQ9BXX3 1397 aa13.02□□□□□ -0.33
RIF1-208ENST00000457745 NEO1Q92859 1461 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms