RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 MAGI3Q5TCQ9 1506 aa15.92■□□□□ 0.14
ATG4A-206ENST00000457035 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.9■□□□□ 0.14
ATG4A-206ENST00000457035 COL17A1Q9UMD9 1497 aaPredicted RBP15.9■□□□□ 0.14
ATG4A-206ENST00000457035 ADGRL1O94910 1474 aa15.88■□□□□ 0.13
ATG4A-206ENST00000457035 KIF14Q15058 1648 aa15.86■□□□□ 0.13
ATG4A-206ENST00000457035 TTC37Q6PGP7 1564 aa15.86■□□□□ 0.13
ATG4A-206ENST00000457035 MAP3K1Q13233 1512 aa15.84■□□□□ 0.13
ATG4A-206ENST00000457035 TIAM1Q13009 1591 aa15.84■□□□□ 0.13
ATG4A-206ENST00000457035 MTUS2Q5JR59 1369 aa15.84■□□□□ 0.13
ATG4A-206ENST00000457035 KANK4Q5T7N3 995 aaPredicted RBP15.82■□□□□ 0.12
ATG4A-206ENST00000457035 PLCH2O75038 1416 aa15.82■□□□□ 0.12
ATG4A-206ENST00000457035 APLP2Q06481 763 aa15.8■□□□□ 0.12
ATG4A-206ENST00000457035 MYO5CQ9NQX4 1742 aa15.8■□□□□ 0.12
ATG4A-206ENST00000457035 LRRC9Q6ZRR7 1453 aa15.79■□□□□ 0.12
ATG4A-206ENST00000457035 PHLDB1Q86UU1 1377 aa15.79■□□□□ 0.12
ATG4A-206ENST00000457035 EHBP1L1Q8N3D4 1523 aa15.78■□□□□ 0.12
ATG4A-206ENST00000457035 NEO1Q92859 1461 aa15.78■□□□□ 0.12
ATG4A-206ENST00000457035 CDC42BPBQ9Y5S2 1711 aa15.78■□□□□ 0.12
ATG4A-206ENST00000457035 CDC42BPAQ5VT25 1732 aa15.77■□□□□ 0.12
ATG4A-206ENST00000457035 EFCAB2Q5VUJ9 269 aa15.77■□□□□ 0.12
ATG4A-206ENST00000457035 ARAP3Q8WWN8 1544 aa15.77■□□□□ 0.11
ATG4A-206ENST00000457035 FANCAO15360 1455 aa15.77■□□□□ 0.11
ATG4A-206ENST00000457035 GPATCH8Q9UKJ3 1502 aaKnown RBP15.76■□□□□ 0.11
ATG4A-206ENST00000457035 AKNAQ7Z591 1439 aa15.76■□□□□ 0.11
ATG4A-206ENST00000457035 SUPT6HQ7KZ85 1726 aaKnown RBP15.74■□□□□ 0.11
ATG4A-206ENST00000457035 CCNB3Q8WWL7 1395 aa15.74■□□□□ 0.11
ATG4A-206ENST00000457035 PREX2Q70Z35 1606 aa15.72■□□□□ 0.11
ATG4A-206ENST00000457035 NCOA2Q15596 1464 aa15.72■□□□□ 0.11
ATG4A-206ENST00000457035 HECW2Q9P2P5 1572 aa15.72■□□□□ 0.11
ATG4A-206ENST00000457035 CFAP74Q9C0B2 1584 aa15.71■□□□□ 0.11
ATG4A-206ENST00000457035 RAPGEF3O95398 923 aa15.71■□□□□ 0.11
ATG4A-206ENST00000457035 ARHGAP5Q13017 1502 aa15.71■□□□□ 0.11
ATG4A-206ENST00000457035 CFDP1Q9UEE9 299 aaPredicted RBP15.7■□□□□ 0.1
ATG4A-206ENST00000457035 SCAPERQ9BY12 1400 aa15.68■□□□□ 0.1
ATG4A-206ENST00000457035 DENND4BO75064 1496 aaPredicted RBP15.67■□□□□ 0.1
ATG4A-206ENST00000457035 ZNF777Q9ULD5 760 aaPredicted RBP15.67■□□□□ 0.1
ATG4A-206ENST00000457035 RICTORQ6R327 1708 aa15.66■□□□□ 0.1
ATG4A-206ENST00000457035 ITSN2Q9NZM3 1697 aa15.65■□□□□ 0.1
ATG4A-206ENST00000457035 ZNF644Q9H582 1327 aaPredicted RBP15.65■□□□□ 0.1
ATG4A-206ENST00000457035 ARHGEF12Q9NZN5 1544 aa15.64■□□□□ 0.09
ATG4A-206ENST00000457035 FRMPD1Q5SYB0 1578 aa15.64■□□□□ 0.09
ATG4A-206ENST00000457035 SAMD9LQ8IVG5 1584 aa15.64■□□□□ 0.09
ATG4A-206ENST00000457035 AFAP1Q8N556 730 aa15.64■□□□□ 0.09
ATG4A-206ENST00000457035 HNRNPMP52272 730 aaKnown RBP eCLIP15.63■□□□□ 0.09
ATG4A-206ENST00000457035 KIAA1107Q9UPP5 1409 aa15.62■□□□□ 0.09
ATG4A-206ENST00000457035 ABCC1P33527 1531 aa15.62■□□□□ 0.09
ATG4A-206ENST00000457035 MYOM3Q5VTT5 1437 aa15.61■□□□□ 0.09
ATG4A-206ENST00000457035 POGZQ7Z3K3 1410 aa15.61■□□□□ 0.09
ATG4A-206ENST00000457035 TRAPPC8Q9Y2L5 1435 aa15.61■□□□□ 0.09
ATG4A-206ENST00000457035 PPARGC1BQ86YN6 1023 aaKnown RBP15.61■□□□□ 0.09
ATG4A-206ENST00000457035 ADAMTSL3P82987 1691 aa15.6■□□□□ 0.09
ATG4A-206ENST00000457035 MIA2Q96PC5 1412 aa15.6■□□□□ 0.09
ATG4A-206ENST00000457035 PLEKHH2Q8IVE3 1493 aa15.59■□□□□ 0.09
ATG4A-206ENST00000457035 ZNF518AQ6AHZ1 1483 aa15.59■□□□□ 0.09
ATG4A-206ENST00000457035 BCORL1Q5H9F3 1711 aa15.58■□□□□ 0.08
ATG4A-206ENST00000457035 RNF39Q9H2S5 420 aa15.58■□□□□ 0.08
ATG4A-206ENST00000457035 MBD5Q9P267 1494 aa15.58■□□□□ 0.08
ATG4A-206ENST00000457035 ZMYM4Q5VZL5 1548 aa15.58■□□□□ 0.08
ATG4A-206ENST00000457035 SYCP2Q9BX26 1530 aa15.58■□□□□ 0.08
ATG4A-206ENST00000457035 ILDR1Q86SU0 546 aaPredicted RBP15.57■□□□□ 0.08
ATG4A-206ENST00000457035 KDM5CP41229 1560 aa15.57■□□□□ 0.08
ATG4A-206ENST00000457035 CAMSAP2Q08AD1 1489 aa15.56■□□□□ 0.08
ATG4A-206ENST00000457035 MAGI2Q86UL8 1455 aa15.56■□□□□ 0.08
ATG4A-206ENST00000457035 MADDQ8WXG6 1647 aa15.55■□□□□ 0.08
ATG4A-206ENST00000457035 RSPH4AQ5TD94 716 aa15.55■□□□□ 0.08
ATG4A-206ENST00000457035 RIMS1Q86UR5 1692 aaKnown RBP15.54■□□□□ 0.08
ATG4A-206ENST00000457035 ARHGEF40Q8TER5 1519 aa15.53■□□□□ 0.08
ATG4A-206ENST00000457035 MLH3Q9UHC1 1453 aa15.53■□□□□ 0.08
ATG4A-206ENST00000457035 FGD6Q6ZV73 1430 aa15.53■□□□□ 0.08
ATG4A-206ENST00000457035 YEATS2Q9ULM3 1422 aa15.53■□□□□ 0.08
ATG4A-206ENST00000457035 ARID4BQ4LE39 1312 aaPredicted RBP15.52■□□□□ 0.08
ATG4A-206ENST00000457035 PTPN23Q9H3S7 1636 aa15.52■□□□□ 0.08
ATG4A-206ENST00000457035 PTPRMP28827 1452 aa15.52■□□□□ 0.07
ATG4A-206ENST00000457035 KIDINS220Q9ULH0 1771 aa15.52■□□□□ 0.07
ATG4A-206ENST00000457035 SPAG9O60271 1321 aaKnown RBP15.51■□□□□ 0.07
ATG4A-206ENST00000457035 ARHGEF5Q12774 1597 aa15.5■□□□□ 0.07
ATG4A-206ENST00000457035 ZFYVE16Q7Z3T8 1539 aa15.5■□□□□ 0.07
ATG4A-206ENST00000457035 MYT1LQ9UL68 1186 aa15.5■□□□□ 0.07
ATG4A-206ENST00000457035 TCOF1Q13428 1488 aaKnown RBP15.5■□□□□ 0.07
ATG4A-206ENST00000457035 SIGLEC1Q9BZZ2 1709 aa15.49■□□□□ 0.07
ATG4A-206ENST00000457035 ATP10AO60312 1499 aa15.49■□□□□ 0.07
ATG4A-206ENST00000457035 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.49■□□□□ 0.07
ATG4A-206ENST00000457035 CCDC141Q6ZP82 1450 aa15.47■□□□□ 0.07
ATG4A-206ENST00000457035 RTEL1-TNFRSF6BF6WH68 1400 aa15.47■□□□□ 0.07
ATG4A-206ENST00000457035 TSPY4P0CV99 314 aa15.47■□□□□ 0.07
ATG4A-206ENST00000457035 TSPY10P0CW01 314 aa15.47■□□□□ 0.07
ATG4A-206ENST00000457035 FER1L4A9Z1Z3 1794 aa15.46■□□□□ 0.07
ATG4A-206ENST00000457035 DIP2CQ9Y2E4 1556 aa15.45■□□□□ 0.06
ATG4A-206ENST00000457035 ABCC5O15440 1437 aa15.45■□□□□ 0.06
ATG4A-206ENST00000457035 ATP7AQ04656 1500 aa15.45■□□□□ 0.06
ATG4A-206ENST00000457035 ABCA6Q8N139 1617 aa15.45■□□□□ 0.06
ATG4A-206ENST00000457035 INO80Q9ULG1 1556 aaPredicted RBP15.45■□□□□ 0.06
ATG4A-206ENST00000457035 FAM50AQ14320 339 aaKnown RBP15.44■□□□□ 0.06
ATG4A-206ENST00000457035 C9orf84Q5VXU9 1444 aa15.43■□□□□ 0.06
ATG4A-206ENST00000457035 DNMT1P26358 1616 aaKnown RBP15.42■□□□□ 0.06
ATG4A-206ENST00000457035 DAPK1P53355 1430 aa15.42■□□□□ 0.06
ATG4A-206ENST00000457035 REREQ9P2R6 1566 aa15.41■□□□□ 0.06
ATG4A-206ENST00000457035 MAST1Q9Y2H9 1570 aa15.41■□□□□ 0.06
ATG4A-206ENST00000457035 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.41■□□□□ 0.06
ATG4A-206ENST00000457035 CACNB1Q02641 598 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms