RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 FRMPD1Q5SYB0 1578 aa36.61■■■■□ 3.45
CBX3-204ENST00000456948 RICTORQ6R327 1708 aa36.56■■■■□ 3.44
CBX3-204ENST00000456948 PREX2Q70Z35 1606 aa36.56■■■■□ 3.44
CBX3-204ENST00000456948 CCNB3Q8WWL7 1395 aa36.55■■■■□ 3.44
CBX3-204ENST00000456948 EHBP1L1Q8N3D4 1523 aa36.55■■■■□ 3.44
CBX3-204ENST00000456948 CDC42BPBQ9Y5S2 1711 aa36.54■■■■□ 3.44
CBX3-204ENST00000456948 APLP2Q06481 763 aa36.53■■■■□ 3.44
CBX3-204ENST00000456948 POGZQ7Z3K3 1410 aa36.52■■■■□ 3.44
CBX3-204ENST00000456948 MAGI2Q86UL8 1455 aa36.52■■■■□ 3.44
CBX3-204ENST00000456948 CFDP1Q9UEE9 299 aaPredicted RBP36.5■■■■□ 3.43
CBX3-204ENST00000456948 CDC42BPAQ5VT25 1732 aa36.49■■■■□ 3.43
CBX3-204ENST00000456948 ZNF777Q9ULD5 760 aaPredicted RBP36.49■■■■□ 3.43
CBX3-204ENST00000456948 GPATCH8Q9UKJ3 1502 aaKnown RBP36.49■■■■□ 3.43
CBX3-204ENST00000456948 ARID4BQ4LE39 1312 aaPredicted RBP36.48■■■■□ 3.43
CBX3-204ENST00000456948 ZNF518AQ6AHZ1 1483 aa36.48■■■■□ 3.43
CBX3-204ENST00000456948 ZMYM4Q5VZL5 1548 aa36.48■■■■□ 3.43
CBX3-204ENST00000456948 MYT1LQ9UL68 1186 aa36.47■■■■□ 3.43
CBX3-204ENST00000456948 TIAM1Q13009 1591 aa36.46■■■■□ 3.43
CBX3-204ENST00000456948 MAP3K1Q13233 1512 aa36.41■■■■□ 3.42
CBX3-204ENST00000456948 ZFYVE16Q7Z3T8 1539 aa36.41■■■■□ 3.42
CBX3-204ENST00000456948 AFAP1Q8N556 730 aa36.41■■■■□ 3.42
CBX3-204ENST00000456948 ARHGEF40Q8TER5 1519 aa36.4■■■■□ 3.42
CBX3-204ENST00000456948 PLEKHH2Q8IVE3 1493 aa36.38■■■■□ 3.41
CBX3-204ENST00000456948 SUPT6HQ7KZ85 1726 aaKnown RBP36.38■■■■□ 3.41
CBX3-204ENST00000456948 ABCC1P33527 1531 aa36.37■■■■□ 3.41
CBX3-204ENST00000456948 LRRC9Q6ZRR7 1453 aa36.35■■■■□ 3.41
CBX3-204ENST00000456948 ITSN2Q9NZM3 1697 aa36.33■■■■□ 3.41
CBX3-204ENST00000456948 NCOA2Q15596 1464 aa36.32■■■■□ 3.41
CBX3-204ENST00000456948 YEATS2Q9ULM3 1422 aa36.32■■■■□ 3.4
CBX3-204ENST00000456948 KIAA1107Q9UPP5 1409 aa36.31■■■■□ 3.4
CBX3-204ENST00000456948 KDM5CP41229 1560 aa36.3■■■■□ 3.4
CBX3-204ENST00000456948 ADAMTSL3P82987 1691 aa36.29■■■■□ 3.4
CBX3-204ENST00000456948 BCORL1Q5H9F3 1711 aa36.29■■■■□ 3.4
CBX3-204ENST00000456948 ATP10AO60312 1499 aa36.29■■■■□ 3.4
CBX3-204ENST00000456948 TRAPPC8Q9Y2L5 1435 aa36.28■■■■□ 3.4
CBX3-204ENST00000456948 HNRNPMP52272 730 aaKnown RBP eCLIP36.28■■■■□ 3.49e-8■□□□□ 11.2
CBX3-204ENST00000456948 SAMD9LQ8IVG5 1584 aa36.27■■■■□ 3.4
CBX3-204ENST00000456948 ARHGEF12Q9NZN5 1544 aa36.27■■■■□ 3.4
CBX3-204ENST00000456948 MLH3Q9UHC1 1453 aa36.26■■■■□ 3.4
CBX3-204ENST00000456948 HECW2Q9P2P5 1572 aa36.24■■■■□ 3.39
CBX3-204ENST00000456948 KANK4Q5T7N3 995 aaPredicted RBP36.24■■■■□ 3.39
CBX3-204ENST00000456948 C9orf84Q5VXU9 1444 aa36.23■■■■□ 3.39
CBX3-204ENST00000456948 SYCP2Q9BX26 1530 aa36.22■■■■□ 3.39
CBX3-204ENST00000456948 SPAG9O60271 1321 aaKnown RBP36.21■■■■□ 3.39
CBX3-204ENST00000456948 PTPRMP28827 1452 aa36.2■■■■□ 3.39
CBX3-204ENST00000456948 MADDQ8WXG6 1647 aa36.19■■■■□ 3.38
CBX3-204ENST00000456948 MLECQ14165 292 aa36.17■■■■□ 3.38
CBX3-204ENST00000456948 RSPH4AQ5TD94 716 aa36.17■■■■□ 3.38
CBX3-204ENST00000456948 ZNF644Q9H582 1327 aaPredicted RBP36.15■■■■□ 3.38
CBX3-204ENST00000456948 SIGLEC1Q9BZZ2 1709 aa36.15■■■■□ 3.38
CBX3-204ENST00000456948 RIMS1Q86UR5 1692 aaKnown RBP36.1■■■■□ 3.37
CBX3-204ENST00000456948 DIP2CQ9Y2E4 1556 aa36.08■■■■□ 3.37
CBX3-204ENST00000456948 PLPPR3Q6T4P5 718 aa36.08■■■■□ 3.37
CBX3-204ENST00000456948 REREQ9P2R6 1566 aa36.06■■■■□ 3.36
CBX3-204ENST00000456948 KIDINS220Q9ULH0 1771 aa36.05■■■■□ 3.36
CBX3-204ENST00000456948 CAMSAP2Q08AD1 1489 aa36.05■■■■□ 3.36
CBX3-204ENST00000456948 MYOM3Q5VTT5 1437 aa36.04■■■■□ 3.36
CBX3-204ENST00000456948 MIA2Q96PC5 1412 aa36.04■■■■□ 3.36
CBX3-204ENST00000456948 ABCA6Q8N139 1617 aa36.04■■■■□ 3.36
CBX3-204ENST00000456948 MBD5Q9P267 1494 aa36.04■■■■□ 3.36
CBX3-204ENST00000456948 TSPY4P0CV99 314 aa36.02■■■■□ 3.36
CBX3-204ENST00000456948 TSPY10P0CW01 314 aa36.02■■■■□ 3.36
CBX3-204ENST00000456948 ATP7AQ04656 1500 aa36.02■■■■□ 3.36
CBX3-204ENST00000456948 CCDC141Q6ZP82 1450 aa35.99■■■■□ 3.35
CBX3-204ENST00000456948 ESF1Q9H501 851 aaKnown RBP35.98■■■■□ 3.35
CBX3-204ENST00000456948 RTEL1-TNFRSF6BF6WH68 1400 aa35.98■■■■□ 3.35
CBX3-204ENST00000456948 FER1L4A9Z1Z3 1794 aa35.97■■■■□ 3.35
CBX3-204ENST00000456948 AGLP35573 1532 aa35.96■■■■□ 3.35
CBX3-204ENST00000456948 INO80Q9ULG1 1556 aaPredicted RBP35.94■■■■□ 3.34
CBX3-204ENST00000456948 ARHGEF5Q12774 1597 aa35.91■■■■□ 3.34
CBX3-204ENST00000456948 A2MP01023 1474 aa35.89■■■■□ 3.34
CBX3-204ENST00000456948 ADGBQ8N7X0 1667 aa35.84■■■■□ 3.33
CBX3-204ENST00000456948 DHX29Q7Z478 1369 aaKnown RBP35.79■■■■□ 3.32
CBX3-204ENST00000456948 FGD6Q6ZV73 1430 aa35.79■■■■□ 3.32
CBX3-204ENST00000456948 CEBPAP49715 358 aaPredicted RBP35.78■■■■□ 3.32
CBX3-204ENST00000456948 PTPN23Q9H3S7 1636 aa35.77■■■■□ 3.32
CBX3-204ENST00000456948 LMTK3Q96Q04 1460 aa35.77■■■■□ 3.32
CBX3-204ENST00000456948 CNTLNQ9NXG0 1405 aa35.76■■■■□ 3.32
CBX3-204ENST00000456948 PPP6R1Q9UPN7 881 aa35.76■■■■□ 3.32
CBX3-204ENST00000456948 PLXNC1O60486 1568 aa35.75■■■■□ 3.31
CBX3-204ENST00000456948 GGT6Q6P531 493 aa35.74■■■■□ 3.31
CBX3-204ENST00000456948 HSPA2P54652 639 aa35.7■■■■□ 3.31
CBX3-204ENST00000456948 MAST1Q9Y2H9 1570 aa35.7■■■■□ 3.31
CBX3-204ENST00000456948 TCOF1Q13428 1488 aaKnown RBP35.68■■■■□ 3.3
CBX3-204ENST00000456948 KIF3BO15066 747 aa35.68■■■■□ 3.3
CBX3-204ENST00000456948 FAM50AQ14320 339 aaKnown RBP35.66■■■■□ 3.3
CBX3-204ENST00000456948 ABCC5O15440 1437 aa35.63■■■■□ 3.29
CBX3-204ENST00000456948 SHANK2Q9UPX8 1470 aa35.62■■■■□ 3.29
CBX3-204ENST00000456948 SETD1BQ9UPS6 1966 aaKnown RBP35.6■■■■□ 3.29
CBX3-204ENST00000456948 DAPK1P53355 1430 aa35.6■■■■□ 3.29
CBX3-204ENST00000456948 C3P01024 1663 aa35.58■■■■□ 3.29
CBX3-204ENST00000456948 DNMT1P26358 1616 aaKnown RBP35.57■■■■□ 3.29
CBX3-204ENST00000456948 PREX1Q8TCU6 1659 aa35.57■■■■□ 3.28
CBX3-204ENST00000456948 ZMYM3Q14202 1370 aa35.57■■■■□ 3.28
CBX3-204ENST00000456948 PPARGC1BQ86YN6 1023 aaKnown RBP35.55■■■■□ 3.28
CBX3-204ENST00000456948 MROH2AA6NES4 1674 aa35.54■■■■□ 3.28
CBX3-204ENST00000456948 ANKRD30AQ9BXX3 1397 aa35.53■■■■□ 3.28
CBX3-204ENST00000456948 CROCC2H7BZ55 1655 aa35.53■■■■□ 3.28
CBX3-204ENST00000456948 RRP7BPQ9NSQ0 103 aa35.53■■■■□ 3.28
CBX3-204ENST00000456948 DUOX2Q9NRD8 1548 aa35.52■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms