RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CDC42BPBQ9Y5S2 1711 aa16.9■□□□□ 0.3
SCN9A-205ENST00000454569 RNF216Q9NWF9 866 aaPredicted RBP16.9■□□□□ 0.3
SCN9A-205ENST00000454569 GPATCH8Q9UKJ3 1502 aaKnown RBP16.89■□□□□ 0.29
SCN9A-205ENST00000454569 TRIM26Q12899 539 aaPredicted RBP16.88■□□□□ 0.29
SCN9A-205ENST00000454569 MYOM3Q5VTT5 1437 aa16.88■□□□□ 0.29
SCN9A-205ENST00000454569 RRBP1Q9P2E9 1410 aaKnown RBP16.86■□□□□ 0.29
SCN9A-205ENST00000454569 MYO5CQ9NQX4 1742 aa16.86■□□□□ 0.29
SCN9A-205ENST00000454569 CCNB3Q8WWL7 1395 aa16.86■□□□□ 0.29
SCN9A-205ENST00000454569 ABCA9Q8IUA7 1624 aa16.86■□□□□ 0.29
SCN9A-205ENST00000454569 FGD6Q6ZV73 1430 aa16.85■□□□□ 0.29
SCN9A-205ENST00000454569 ITSN2Q9NZM3 1697 aa16.85■□□□□ 0.29
SCN9A-205ENST00000454569 PCGF6Q9BYE7 350 aa16.85■□□□□ 0.29
SCN9A-205ENST00000454569 PREX2Q70Z35 1606 aa16.84■□□□□ 0.29
SCN9A-205ENST00000454569 KIF13AQ9H1H9 1805 aa16.84■□□□□ 0.29
SCN9A-205ENST00000454569 ZNF644Q9H582 1327 aaPredicted RBP16.84■□□□□ 0.29
SCN9A-205ENST00000454569 PTPN23Q9H3S7 1636 aa16.84■□□□□ 0.29
SCN9A-205ENST00000454569 DIP2BQ9P265 1576 aa16.82■□□□□ 0.28
SCN9A-205ENST00000454569 TSPOAP1O95153 1857 aa16.79■□□□□ 0.28
SCN9A-205ENST00000454569 FAM50AQ14320 339 aaKnown RBP16.79■□□□□ 0.28
SCN9A-205ENST00000454569 CFDP1Q9UEE9 299 aaPredicted RBP16.79■□□□□ 0.28
SCN9A-205ENST00000454569 PLCH2O75038 1416 aa16.78■□□□□ 0.28
SCN9A-205ENST00000454569 MIA2Q96PC5 1412 aa16.78■□□□□ 0.28
SCN9A-205ENST00000454569 ZNF777Q9ULD5 760 aaPredicted RBP16.78■□□□□ 0.28
SCN9A-205ENST00000454569 DMRT2Q9Y5R5 561 aa16.78■□□□□ 0.28
SCN9A-205ENST00000454569 TCOF1Q13428 1488 aaKnown RBP16.78■□□□□ 0.28
SCN9A-205ENST00000454569 SAMD9LQ8IVG5 1584 aa16.78■□□□□ 0.28
SCN9A-205ENST00000454569 MAP3K4Q9Y6R4 1608 aa16.77■□□□□ 0.28
SCN9A-205ENST00000454569 GLI2P10070 1586 aa16.77■□□□□ 0.28
SCN9A-205ENST00000454569 FAM69CQ0P6D2 419 aa16.77■□□□□ 0.27
SCN9A-205ENST00000454569 ARHGAP5Q13017 1502 aa16.76■□□□□ 0.27
SCN9A-205ENST00000454569 CAMSAP2Q08AD1 1489 aa16.76■□□□□ 0.27
SCN9A-205ENST00000454569 ITGAEP38570 1179 aa16.75■□□□□ 0.27
SCN9A-205ENST00000454569 PPRC1Q5VV67 1664 aaKnown RBP16.75■□□□□ 0.27
SCN9A-205ENST00000454569 CD109Q6YHK3 1445 aa16.75■□□□□ 0.27
SCN9A-205ENST00000454569 PTPRKQ15262 1439 aa16.73■□□□□ 0.27
SCN9A-205ENST00000454569 ARHGEF12Q9NZN5 1544 aa16.72■□□□□ 0.27
SCN9A-205ENST00000454569 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.71■□□□□ 0.27
SCN9A-205ENST00000454569 ARAP3Q8WWN8 1544 aa16.7■□□□□ 0.26
SCN9A-205ENST00000454569 HNRNPMP52272 730 aaKnown RBP eCLIP16.7■□□□□ 0.26
SCN9A-205ENST00000454569 FOXD4L1Q9NU39 408 aa16.7■□□□□ 0.26
SCN9A-205ENST00000454569 FANCAO15360 1455 aa16.7■□□□□ 0.26
SCN9A-205ENST00000454569 HOXD11P31277 338 aaPredicted RBP16.69■□□□□ 0.26
SCN9A-205ENST00000454569 DNMT1P26358 1616 aaKnown RBP16.69■□□□□ 0.26
SCN9A-205ENST00000454569 EFCAB2Q5VUJ9 269 aa16.68■□□□□ 0.26
SCN9A-205ENST00000454569 SYCP2Q9BX26 1530 aa16.68■□□□□ 0.26
SCN9A-205ENST00000454569 MBD5Q9P267 1494 aa16.68■□□□□ 0.26
SCN9A-205ENST00000454569 ABCC5O15440 1437 aa16.67■□□□□ 0.26
SCN9A-205ENST00000454569 ABCC1P33527 1531 aa16.66■□□□□ 0.26
SCN9A-205ENST00000454569 CROCC2H7BZ55 1655 aa16.66■□□□□ 0.26
SCN9A-205ENST00000454569 DAPK1P53355 1430 aa16.66■□□□□ 0.26
SCN9A-205ENST00000454569 AKNAQ7Z591 1439 aa16.64■□□□□ 0.26
SCN9A-205ENST00000454569 CHIC2Q9UKJ5 165 aa16.64■□□□□ 0.25
SCN9A-205ENST00000454569 ARHGEF5Q12774 1597 aa16.63■□□□□ 0.25
SCN9A-205ENST00000454569 TRAPPC8Q9Y2L5 1435 aa16.63■□□□□ 0.25
SCN9A-205ENST00000454569 ADGRL1O94910 1474 aa16.61■□□□□ 0.25
SCN9A-205ENST00000454569 TRHP20396 242 aaPredicted RBP16.61■□□□□ 0.25
SCN9A-205ENST00000454569 SCAPERQ9BY12 1400 aa16.61■□□□□ 0.25
SCN9A-205ENST00000454569 KIAA1107Q9UPP5 1409 aa16.61■□□□□ 0.25
SCN9A-205ENST00000454569 CFAP74Q9C0B2 1584 aa16.61■□□□□ 0.25
SCN9A-205ENST00000454569 AFAP1Q8N556 730 aa16.6■□□□□ 0.25
SCN9A-205ENST00000454569 PLEKHH2Q8IVE3 1493 aa16.58■□□□□ 0.25
SCN9A-205ENST00000454569 NEO1Q92859 1461 aa16.58■□□□□ 0.25
SCN9A-205ENST00000454569 CCDC141Q6ZP82 1450 aa16.58■□□□□ 0.24
SCN9A-205ENST00000454569 ADGBQ8N7X0 1667 aa16.58■□□□□ 0.24
SCN9A-205ENST00000454569 RRP7BPQ9NSQ0 103 aa16.57■□□□□ 0.24
SCN9A-205ENST00000454569 RICTORQ6R327 1708 aa16.57■□□□□ 0.24
SCN9A-205ENST00000454569 KDM6BO15054 1643 aa16.56■□□□□ 0.24
SCN9A-205ENST00000454569 COL17A1Q9UMD9 1497 aaPredicted RBP16.55■□□□□ 0.24
SCN9A-205ENST00000454569 RAPGEF3O95398 923 aa16.55■□□□□ 0.24
SCN9A-205ENST00000454569 C9orf84Q5VXU9 1444 aa16.54■□□□□ 0.24
SCN9A-205ENST00000454569 FRMPD1Q5SYB0 1578 aa16.54■□□□□ 0.24
SCN9A-205ENST00000454569 MAST1Q9Y2H9 1570 aa16.53■□□□□ 0.24
SCN9A-205ENST00000454569 TEX14Q8IWB6 1497 aa16.53■□□□□ 0.24
SCN9A-205ENST00000454569 SHANK2Q9UPX8 1470 aa16.53■□□□□ 0.24
SCN9A-205ENST00000454569 GCC2Q8IWJ2 1684 aa16.53■□□□□ 0.24
SCN9A-205ENST00000454569 KIDINS220Q9ULH0 1771 aa16.53■□□□□ 0.24
SCN9A-205ENST00000454569 NAIPQ13075 1403 aa16.52■□□□□ 0.24
SCN9A-205ENST00000454569 NCOA1Q15788 1441 aa16.52■□□□□ 0.24
SCN9A-205ENST00000454569 ADGRL2O95490 1459 aa16.51■□□□□ 0.23
SCN9A-205ENST00000454569 TSPY4P0CV99 314 aa16.51■□□□□ 0.23
SCN9A-205ENST00000454569 TSPY10P0CW01 314 aa16.51■□□□□ 0.23
SCN9A-205ENST00000454569 RSPH4AQ5TD94 716 aa16.51■□□□□ 0.23
SCN9A-205ENST00000454569 POGZQ7Z3K3 1410 aa16.51■□□□□ 0.23
SCN9A-205ENST00000454569 DENND4BO75064 1496 aaPredicted RBP16.51■□□□□ 0.23
SCN9A-205ENST00000454569 KDM5CP41229 1560 aa16.5■□□□□ 0.23
SCN9A-205ENST00000454569 INO80Q9ULG1 1556 aaPredicted RBP16.5■□□□□ 0.23
SCN9A-205ENST00000454569 HFM1A2PYH4 1435 aa16.5■□□□□ 0.23
SCN9A-205ENST00000454569 ZFYVE16Q7Z3T8 1539 aa16.49■□□□□ 0.23
SCN9A-205ENST00000454569 SETD5Q9C0A6 1442 aa16.49■□□□□ 0.23
SCN9A-205ENST00000454569 ROCK1Q13464 1354 aa16.49■□□□□ 0.23
SCN9A-205ENST00000454569 RAB3GAP2Q9H2M9 1393 aa16.48■□□□□ 0.23
SCN9A-205ENST00000454569 SPAG9O60271 1321 aaKnown RBP16.48■□□□□ 0.23
SCN9A-205ENST00000454569 ZNF518AQ6AHZ1 1483 aa16.48■□□□□ 0.23
SCN9A-205ENST00000454569 ATP7AQ04656 1500 aa16.47■□□□□ 0.23
SCN9A-205ENST00000454569 PLXNC1O60486 1568 aa16.46■□□□□ 0.23
SCN9A-205ENST00000454569 ANKRD30AQ9BXX3 1397 aa16.46■□□□□ 0.23
SCN9A-205ENST00000454569 HECW2Q9P2P5 1572 aa16.45■□□□□ 0.22
SCN9A-205ENST00000454569 RTEL1-TNFRSF6BF6WH68 1400 aa16.44■□□□□ 0.22
SCN9A-205ENST00000454569 KIF15Q9NS87 1388 aa16.44■□□□□ 0.22
SCN9A-205ENST00000454569 ABCA6Q8N139 1617 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms