RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 ITSN2Q9NZM3 1697 aa17.97■□□□□ 0.47
SCN9A-204ENST00000452182 PREX2Q70Z35 1606 aa17.96■□□□□ 0.47
SCN9A-204ENST00000452182 GPATCH8Q9UKJ3 1502 aaKnown RBP17.96■□□□□ 0.47
SCN9A-204ENST00000452182 CCNB3Q8WWL7 1395 aa17.96■□□□□ 0.47
SCN9A-204ENST00000452182 PPRC1Q5VV67 1664 aaKnown RBP17.95■□□□□ 0.46
SCN9A-204ENST00000452182 CDC42BPBQ9Y5S2 1711 aa17.95■□□□□ 0.46
SCN9A-204ENST00000452182 TEX14Q8IWB6 1497 aa17.93■□□□□ 0.46
SCN9A-204ENST00000452182 TSPOAP1O95153 1857 aa17.93■□□□□ 0.46
SCN9A-204ENST00000452182 MYOM3Q5VTT5 1437 aa17.92■□□□□ 0.46
SCN9A-204ENST00000452182 PHLDB1Q86UU1 1377 aa17.91■□□□□ 0.46
SCN9A-204ENST00000452182 CFAP74Q9C0B2 1584 aa17.91■□□□□ 0.46
SCN9A-204ENST00000452182 PPARGC1BQ86YN6 1023 aaKnown RBP17.9■□□□□ 0.46
SCN9A-204ENST00000452182 ARHGAP5Q13017 1502 aa17.9■□□□□ 0.46
SCN9A-204ENST00000452182 FANCAO15360 1455 aa17.9■□□□□ 0.46
SCN9A-204ENST00000452182 NEO1Q92859 1461 aa17.9■□□□□ 0.46
SCN9A-204ENST00000452182 MIA2Q96PC5 1412 aa17.89■□□□□ 0.46
SCN9A-204ENST00000452182 EFCAB2Q5VUJ9 269 aa17.88■□□□□ 0.45
SCN9A-204ENST00000452182 PPP4R3CPQ6ZMV5 832 aa17.88■□□□□ 0.45
SCN9A-204ENST00000452182 CFDP1Q9UEE9 299 aaPredicted RBP17.87■□□□□ 0.45
SCN9A-204ENST00000452182 FGD6Q6ZV73 1430 aa17.85■□□□□ 0.45
SCN9A-204ENST00000452182 AKNAQ7Z591 1439 aa17.84■□□□□ 0.45
SCN9A-204ENST00000452182 SAMD9LQ8IVG5 1584 aa17.84■□□□□ 0.45
SCN9A-204ENST00000452182 PLEKHH2Q8IVE3 1493 aa17.82■□□□□ 0.44
SCN9A-204ENST00000452182 KIAA1107Q9UPP5 1409 aa17.81■□□□□ 0.44
SCN9A-204ENST00000452182 ABCC1P33527 1531 aa17.81■□□□□ 0.44
SCN9A-204ENST00000452182 PTPN23Q9H3S7 1636 aa17.81■□□□□ 0.44
SCN9A-204ENST00000452182 ADGRL1O94910 1474 aa17.8■□□□□ 0.44
SCN9A-204ENST00000452182 TCOF1Q13428 1488 aaKnown RBP17.8■□□□□ 0.44
SCN9A-204ENST00000452182 CAMSAP2Q08AD1 1489 aa17.8■□□□□ 0.44
SCN9A-204ENST00000452182 RRBP1Q9P2E9 1410 aaKnown RBP17.79■□□□□ 0.44
SCN9A-204ENST00000452182 ZNF777Q9ULD5 760 aaPredicted RBP17.79■□□□□ 0.44
SCN9A-204ENST00000452182 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.77■□□□□ 0.43
SCN9A-204ENST00000452182 ZNF644Q9H582 1327 aaPredicted RBP17.77■□□□□ 0.43
SCN9A-204ENST00000452182 SCAPERQ9BY12 1400 aa17.76■□□□□ 0.43
SCN9A-204ENST00000452182 SYCP2Q9BX26 1530 aa17.76■□□□□ 0.43
SCN9A-204ENST00000452182 ARHGEF12Q9NZN5 1544 aa17.76■□□□□ 0.43
SCN9A-204ENST00000452182 MBD5Q9P267 1494 aa17.76■□□□□ 0.43
SCN9A-204ENST00000452182 ARHGEF5Q12774 1597 aa17.75■□□□□ 0.43
SCN9A-204ENST00000452182 DENND4BO75064 1496 aaPredicted RBP17.74■□□□□ 0.43
SCN9A-204ENST00000452182 KDM6BO15054 1643 aa17.74■□□□□ 0.43
SCN9A-204ENST00000452182 RICTORQ6R327 1708 aa17.74■□□□□ 0.43
SCN9A-204ENST00000452182 COL17A1Q9UMD9 1497 aaPredicted RBP17.74■□□□□ 0.43
SCN9A-204ENST00000452182 POGZQ7Z3K3 1410 aa17.73■□□□□ 0.43
SCN9A-204ENST00000452182 RSPH4AQ5TD94 716 aa17.73■□□□□ 0.43
SCN9A-204ENST00000452182 ZNF518AQ6AHZ1 1483 aa17.73■□□□□ 0.43
SCN9A-204ENST00000452182 HNRNPMP52272 730 aaKnown RBP eCLIP17.71■□□□□ 0.43
SCN9A-204ENST00000452182 FRMPD1Q5SYB0 1578 aa17.71■□□□□ 0.43
SCN9A-204ENST00000452182 DNMT1P26358 1616 aaKnown RBP17.71■□□□□ 0.42
SCN9A-204ENST00000452182 TRAPPC8Q9Y2L5 1435 aa17.71■□□□□ 0.42
SCN9A-204ENST00000452182 KDM5CP41229 1560 aa17.7■□□□□ 0.42
SCN9A-204ENST00000452182 CCDC141Q6ZP82 1450 aa17.7■□□□□ 0.42
SCN9A-204ENST00000452182 ZMYM4Q5VZL5 1548 aa17.69■□□□□ 0.42
SCN9A-204ENST00000452182 FAM50AQ14320 339 aaKnown RBP17.69■□□□□ 0.42
SCN9A-204ENST00000452182 RAPGEF3O95398 923 aa17.68■□□□□ 0.42
SCN9A-204ENST00000452182 CROCC2H7BZ55 1655 aa17.67■□□□□ 0.42
SCN9A-204ENST00000452182 ABCC5O15440 1437 aa17.66■□□□□ 0.42
SCN9A-204ENST00000452182 DAPK1P53355 1430 aa17.66■□□□□ 0.42
SCN9A-204ENST00000452182 AFAP1Q8N556 730 aa17.66■□□□□ 0.42
SCN9A-204ENST00000452182 SHANK2Q9UPX8 1470 aa17.65■□□□□ 0.42
SCN9A-204ENST00000452182 MAGI2Q86UL8 1455 aa17.65■□□□□ 0.42
SCN9A-204ENST00000452182 MLH3Q9UHC1 1453 aa17.65■□□□□ 0.42
SCN9A-204ENST00000452182 MAST1Q9Y2H9 1570 aa17.64■□□□□ 0.42
SCN9A-204ENST00000452182 HECW2Q9P2P5 1572 aa17.64■□□□□ 0.41
SCN9A-204ENST00000452182 RTEL1-TNFRSF6BF6WH68 1400 aa17.63■□□□□ 0.41
SCN9A-204ENST00000452182 INO80Q9ULG1 1556 aaPredicted RBP17.63■□□□□ 0.41
SCN9A-204ENST00000452182 TSPY4P0CV99 314 aa17.63■□□□□ 0.41
SCN9A-204ENST00000452182 TSPY10P0CW01 314 aa17.63■□□□□ 0.41
SCN9A-204ENST00000452182 NCBP3Q53F19 620 aaKnown RBP17.61■□□□□ 0.41
SCN9A-204ENST00000452182 SPAG9O60271 1321 aaKnown RBP17.61■□□□□ 0.41
SCN9A-204ENST00000452182 ZFYVE16Q7Z3T8 1539 aa17.61■□□□□ 0.41
SCN9A-204ENST00000452182 KIDINS220Q9ULH0 1771 aa17.61■□□□□ 0.41
SCN9A-204ENST00000452182 MSH5O43196 834 aa17.61■□□□□ 0.41
SCN9A-204ENST00000452182 ATP7AQ04656 1500 aa17.61■□□□□ 0.41
SCN9A-204ENST00000452182 C9orf84Q5VXU9 1444 aa17.6■□□□□ 0.41
SCN9A-204ENST00000452182 PTPRKQ15262 1439 aa17.59■□□□□ 0.41
SCN9A-204ENST00000452182 ADGRL2O95490 1459 aa17.58■□□□□ 0.4
SCN9A-204ENST00000452182 ADGBQ8N7X0 1667 aa17.58■□□□□ 0.4
SCN9A-204ENST00000452182 PLXNC1O60486 1568 aa17.58■□□□□ 0.4
SCN9A-204ENST00000452182 ARHGEF40Q8TER5 1519 aa17.57■□□□□ 0.4
SCN9A-204ENST00000452182 ROCK1Q13464 1354 aa17.56■□□□□ 0.4
SCN9A-204ENST00000452182 ABCA6Q8N139 1617 aa17.55■□□□□ 0.4
SCN9A-204ENST00000452182 NCOA1Q15788 1441 aa17.54■□□□□ 0.4
SCN9A-204ENST00000452182 YEATS2Q9ULM3 1422 aa17.54■□□□□ 0.4
SCN9A-204ENST00000452182 DIP2CQ9Y2E4 1556 aa17.54■□□□□ 0.4
SCN9A-204ENST00000452182 ITGAEP38570 1179 aa17.54■□□□□ 0.4
SCN9A-204ENST00000452182 TRIM26Q12899 539 aaPredicted RBP17.54■□□□□ 0.4
SCN9A-204ENST00000452182 ANKRD30AQ9BXX3 1397 aa17.53■□□□□ 0.4
SCN9A-204ENST00000452182 REREQ9P2R6 1566 aa17.53■□□□□ 0.4
SCN9A-204ENST00000452182 MYT1LQ9UL68 1186 aa17.52■□□□□ 0.4
SCN9A-204ENST00000452182 ATP10AO60312 1499 aa17.52■□□□□ 0.39
SCN9A-204ENST00000452182 CHIC2Q9UKJ5 165 aa17.51■□□□□ 0.39
SCN9A-204ENST00000452182 KIF15Q9NS87 1388 aa17.49■□□□□ 0.39
SCN9A-204ENST00000452182 DUOX2Q9NRD8 1548 aa17.49■□□□□ 0.39
SCN9A-204ENST00000452182 A2MP01023 1474 aa17.48■□□□□ 0.39
SCN9A-204ENST00000452182 DHX29Q7Z478 1369 aaKnown RBP17.48■□□□□ 0.39
SCN9A-204ENST00000452182 RRP7BPQ9NSQ0 103 aa17.47■□□□□ 0.39
SCN9A-204ENST00000452182 HFM1A2PYH4 1435 aa17.46■□□□□ 0.39
SCN9A-204ENST00000452182 GCC2Q8IWJ2 1684 aa17.46■□□□□ 0.39
SCN9A-204ENST00000452182 AGLP35573 1532 aa17.46■□□□□ 0.38
SCN9A-204ENST00000452182 ERBINQ96RT1 1412 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms