RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 FRMPD1Q5SYB0 1578 aa22.76■■□□□ 1.23
COL3A1-203ENST00000450867 LRRC9Q6ZRR7 1453 aa22.74■■□□□ 1.23
COL3A1-203ENST00000450867 ARHGAP5Q13017 1502 aa22.73■■□□□ 1.23
COL3A1-203ENST00000450867 GPATCH8Q9UKJ3 1502 aaKnown RBP22.72■■□□□ 1.23
COL3A1-203ENST00000450867 ITSN2Q9NZM3 1697 aa22.72■■□□□ 1.23
COL3A1-203ENST00000450867 EFCAB2Q5VUJ9 269 aa22.7■■□□□ 1.22
COL3A1-203ENST00000450867 ADGRL1O94910 1474 aa22.7■■□□□ 1.22
COL3A1-203ENST00000450867 DENND4BO75064 1496 aaPredicted RBP22.69■■□□□ 1.22
COL3A1-203ENST00000450867 ZMYM4Q5VZL5 1548 aa22.68■■□□□ 1.22
COL3A1-203ENST00000450867 NCOA2Q15596 1464 aa22.67■■□□□ 1.22
COL3A1-203ENST00000450867 ABCC1P33527 1531 aa22.67■■□□□ 1.22
COL3A1-203ENST00000450867 CCNB3Q8WWL7 1395 aa22.65■■□□□ 1.22
COL3A1-203ENST00000450867 POGZQ7Z3K3 1410 aa22.65■■□□□ 1.22
COL3A1-203ENST00000450867 SAMD9LQ8IVG5 1584 aa22.64■■□□□ 1.22
COL3A1-203ENST00000450867 SCAPERQ9BY12 1400 aa22.64■■□□□ 1.21
COL3A1-203ENST00000450867 KDM5CP41229 1560 aa22.62■■□□□ 1.21
COL3A1-203ENST00000450867 KANK4Q5T7N3 995 aaPredicted RBP22.61■■□□□ 1.21
COL3A1-203ENST00000450867 RAPGEF3O95398 923 aa22.6■■□□□ 1.21
COL3A1-203ENST00000450867 ZNF518AQ6AHZ1 1483 aa22.6■■□□□ 1.21
COL3A1-203ENST00000450867 MAGI2Q86UL8 1455 aa22.59■■□□□ 1.21
COL3A1-203ENST00000450867 ARHGEF40Q8TER5 1519 aa22.58■■□□□ 1.21
COL3A1-203ENST00000450867 ARHGEF12Q9NZN5 1544 aa22.58■■□□□ 1.21
COL3A1-203ENST00000450867 PLEKHH2Q8IVE3 1493 aa22.58■■□□□ 1.2
COL3A1-203ENST00000450867 APLP2Q06481 763 aa22.57■■□□□ 1.2
COL3A1-203ENST00000450867 KIAA1107Q9UPP5 1409 aa22.57■■□□□ 1.2
COL3A1-203ENST00000450867 CFDP1Q9UEE9 299 aaPredicted RBP22.55■■□□□ 1.2
COL3A1-203ENST00000450867 SYCP2Q9BX26 1530 aa22.54■■□□□ 1.2
COL3A1-203ENST00000450867 HECW2Q9P2P5 1572 aa22.53■■□□□ 1.2
COL3A1-203ENST00000450867 ZFYVE16Q7Z3T8 1539 aa22.52■■□□□ 1.2
COL3A1-203ENST00000450867 MYOM3Q5VTT5 1437 aa22.51■■□□□ 1.19
COL3A1-203ENST00000450867 TRAPPC8Q9Y2L5 1435 aa22.51■■□□□ 1.19
COL3A1-203ENST00000450867 MLH3Q9UHC1 1453 aa22.5■■□□□ 1.19
COL3A1-203ENST00000450867 MIA2Q96PC5 1412 aa22.49■■□□□ 1.19
COL3A1-203ENST00000450867 CAMSAP2Q08AD1 1489 aa22.48■■□□□ 1.19
COL3A1-203ENST00000450867 MBD5Q9P267 1494 aa22.48■■□□□ 1.19
COL3A1-203ENST00000450867 KIDINS220Q9ULH0 1771 aa22.48■■□□□ 1.19
COL3A1-203ENST00000450867 YEATS2Q9ULM3 1422 aa22.47■■□□□ 1.19
COL3A1-203ENST00000450867 ARHGEF5Q12774 1597 aa22.46■■□□□ 1.19
COL3A1-203ENST00000450867 INO80Q9ULG1 1556 aaPredicted RBP22.46■■□□□ 1.19
COL3A1-203ENST00000450867 AFAP1Q8N556 730 aa22.45■■□□□ 1.18
COL3A1-203ENST00000450867 ZNF777Q9ULD5 760 aaPredicted RBP22.45■■□□□ 1.18
COL3A1-203ENST00000450867 REREQ9P2R6 1566 aa22.45■■□□□ 1.18
COL3A1-203ENST00000450867 ABCA6Q8N139 1617 aa22.44■■□□□ 1.18
COL3A1-203ENST00000450867 DIP2CQ9Y2E4 1556 aa22.44■■□□□ 1.18
COL3A1-203ENST00000450867 SIGLEC1Q9BZZ2 1709 aa22.43■■□□□ 1.18
COL3A1-203ENST00000450867 ZNF644Q9H582 1327 aaPredicted RBP22.43■■□□□ 1.18
COL3A1-203ENST00000450867 ATP10AO60312 1499 aa22.41■■□□□ 1.18
COL3A1-203ENST00000450867 HNRNPMP52272 730 aaKnown RBP eCLIP22.4■■□□□ 1.18
COL3A1-203ENST00000450867 ATP7AQ04656 1500 aa22.4■■□□□ 1.18
COL3A1-203ENST00000450867 PTPN23Q9H3S7 1636 aa22.39■■□□□ 1.18
COL3A1-203ENST00000450867 TCOF1Q13428 1488 aaKnown RBP22.39■■□□□ 1.17
COL3A1-203ENST00000450867 CCDC141Q6ZP82 1450 aa22.39■■□□□ 1.17
COL3A1-203ENST00000450867 FGD6Q6ZV73 1430 aa22.39■■□□□ 1.17
COL3A1-203ENST00000450867 BCORL1Q5H9F3 1711 aa22.38■■□□□ 1.17
COL3A1-203ENST00000450867 C9orf84Q5VXU9 1444 aa22.38■■□□□ 1.17
COL3A1-203ENST00000450867 RSPH4AQ5TD94 716 aa22.36■■□□□ 1.17
COL3A1-203ENST00000450867 RTEL1-TNFRSF6BF6WH68 1400 aa22.36■■□□□ 1.17
COL3A1-203ENST00000450867 ADAMTSL3P82987 1691 aa22.36■■□□□ 1.17
COL3A1-203ENST00000450867 MAST1Q9Y2H9 1570 aa22.35■■□□□ 1.17
COL3A1-203ENST00000450867 ADGBQ8N7X0 1667 aa22.35■■□□□ 1.17
COL3A1-203ENST00000450867 CROCC2H7BZ55 1655 aa22.34■■□□□ 1.17
COL3A1-203ENST00000450867 SPAG9O60271 1321 aaKnown RBP22.33■■□□□ 1.17
COL3A1-203ENST00000450867 AGLP35573 1532 aa22.33■■□□□ 1.17
COL3A1-203ENST00000450867 KDM4FA0A1W2PPD8 638 aa22.33■■□□□ 1.17
COL3A1-203ENST00000450867 PLXNC1O60486 1568 aa22.32■■□□□ 1.16
COL3A1-203ENST00000450867 DNMT1P26358 1616 aaKnown RBP22.31■■□□□ 1.16
COL3A1-203ENST00000450867 SHANK2Q9UPX8 1470 aa22.28■■□□□ 1.16
COL3A1-203ENST00000450867 MADDQ8WXG6 1647 aa22.25■■□□□ 1.15
COL3A1-203ENST00000450867 A2MP01023 1474 aa22.23■■□□□ 1.15
COL3A1-203ENST00000450867 ABCC5O15440 1437 aa22.23■■□□□ 1.15
COL3A1-203ENST00000450867 FER1L4A9Z1Z3 1794 aa22.22■■□□□ 1.15
COL3A1-203ENST00000450867 MYT1LQ9UL68 1186 aa22.22■■□□□ 1.15
COL3A1-203ENST00000450867 DAPK1P53355 1430 aa22.22■■□□□ 1.15
COL3A1-203ENST00000450867 ARID4BQ4LE39 1312 aaPredicted RBP22.21■■□□□ 1.15
COL3A1-203ENST00000450867 TSPY4P0CV99 314 aa22.19■■□□□ 1.14
COL3A1-203ENST00000450867 TSPY10P0CW01 314 aa22.19■■□□□ 1.14
COL3A1-203ENST00000450867 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.19■■□□□ 1.14
COL3A1-203ENST00000450867 RIMS1Q86UR5 1692 aaKnown RBP22.18■■□□□ 1.14
COL3A1-203ENST00000450867 DHX29Q7Z478 1369 aaKnown RBP22.17■■□□□ 1.14
COL3A1-203ENST00000450867 EIF2AK4Q9P2K8 1649 aaKnown RBP22.15■■□□□ 1.14
COL3A1-203ENST00000450867 RRBP1Q9P2E9 1410 aaKnown RBP22.14■■□□□ 1.14
COL3A1-203ENST00000450867 ADGRL2O95490 1459 aa22.14■■□□□ 1.13
COL3A1-203ENST00000450867 PTPRMP28827 1452 aa22.14■■□□□ 1.13
COL3A1-203ENST00000450867 PPARGC1BQ86YN6 1023 aaKnown RBP22.13■■□□□ 1.13
COL3A1-203ENST00000450867 DUOX2Q9NRD8 1548 aa22.12■■□□□ 1.13
COL3A1-203ENST00000450867 MROH2AA6NES4 1674 aa22.11■■□□□ 1.13
COL3A1-203ENST00000450867 RNF17Q9BXT8 1623 aaKnown RBP22.11■■□□□ 1.13
COL3A1-203ENST00000450867 AEBP2Q6ZN18 517 aaPredicted RBP22.1■■□□□ 1.13
COL3A1-203ENST00000450867 FAM135AQ9P2D6 1515 aa22.1■■□□□ 1.13
COL3A1-203ENST00000450867 FAM50AQ14320 339 aaKnown RBP22.08■■□□□ 1.13
COL3A1-203ENST00000450867 NCOA1Q15788 1441 aa22.07■■□□□ 1.12
COL3A1-203ENST00000450867 MLECQ14165 292 aa22.06■■□□□ 1.12
COL3A1-203ENST00000450867 KIF15Q9NS87 1388 aa22.06■■□□□ 1.12
COL3A1-203ENST00000450867 PTPRKQ15262 1439 aa22.06■■□□□ 1.12
COL3A1-203ENST00000450867 ERBINQ96RT1 1412 aa22.06■■□□□ 1.12
COL3A1-203ENST00000450867 CNTLNQ9NXG0 1405 aa22.06■■□□□ 1.12
COL3A1-203ENST00000450867 ANKRD30AQ9BXX3 1397 aa22.05■■□□□ 1.12
COL3A1-203ENST00000450867 C3P01024 1663 aa22.04■■□□□ 1.12
COL3A1-203ENST00000450867 PPP6R1Q9UPN7 881 aa22.04■■□□□ 1.12
COL3A1-203ENST00000450867 DEPDC5O75140 1603 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms