RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 ARHGAP5Q13017 1502 aa29.72■■■□□ 2.35
SGCE-207ENST00000447873 PCGF6Q9BYE7 350 aa29.72■■■□□ 2.35
SGCE-207ENST00000447873 ZNF777Q9ULD5 760 aaPredicted RBP29.7■■■□□ 2.35
SGCE-207ENST00000447873 FAM69CQ0P6D2 419 aa29.69■■■□□ 2.34
SGCE-207ENST00000447873 TCOF1Q13428 1488 aaKnown RBP29.69■■■□□ 2.34
SGCE-207ENST00000447873 CD109Q6YHK3 1445 aa29.69■■■□□ 2.34
SGCE-207ENST00000447873 ARAP3Q8WWN8 1544 aa29.69■■■□□ 2.34
SGCE-207ENST00000447873 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.68■■■□□ 2.34
SGCE-207ENST00000447873 MAP3K4Q9Y6R4 1608 aa29.66■■■□□ 2.34
SGCE-207ENST00000447873 CAMSAP2Q08AD1 1489 aa29.66■■■□□ 2.34
SGCE-207ENST00000447873 ZNF644Q9H582 1327 aaPredicted RBP29.65■■■□□ 2.34
SGCE-207ENST00000447873 KIF13AQ9H1H9 1805 aa29.64■■■□□ 2.34
SGCE-207ENST00000447873 EFCAB2Q5VUJ9 269 aa29.64■■■□□ 2.33
SGCE-207ENST00000447873 SAMD9LQ8IVG5 1584 aa29.61■■■□□ 2.33
SGCE-207ENST00000447873 FANCAO15360 1455 aa29.59■■■□□ 2.33
SGCE-207ENST00000447873 ITGAEP38570 1179 aa29.59■■■□□ 2.33
SGCE-207ENST00000447873 PLEKHH2Q8IVE3 1493 aa29.54■■■□□ 2.32
SGCE-207ENST00000447873 CFAP74Q9C0B2 1584 aa29.54■■■□□ 2.32
SGCE-207ENST00000447873 TSPOAP1O95153 1857 aa29.54■■■□□ 2.32
SGCE-207ENST00000447873 DNMT1P26358 1616 aaKnown RBP29.51■■■□□ 2.31
SGCE-207ENST00000447873 KIAA1107Q9UPP5 1409 aa29.5■■■□□ 2.31
SGCE-207ENST00000447873 ABCC1P33527 1531 aa29.5■■■□□ 2.31
SGCE-207ENST00000447873 SYCP2Q9BX26 1530 aa29.5■■■□□ 2.31
SGCE-207ENST00000447873 HNRNPMP52272 730 aaKnown RBP eCLIP29.49■■■□□ 2.315e-8■■■■■ 27.1
SGCE-207ENST00000447873 AKNAQ7Z591 1439 aa29.48■■■□□ 2.31
SGCE-207ENST00000447873 TRHP20396 242 aaPredicted RBP29.47■■■□□ 2.31
SGCE-207ENST00000447873 NEO1Q92859 1461 aa29.47■■■□□ 2.31
SGCE-207ENST00000447873 DAPK1P53355 1430 aa29.47■■■□□ 2.31
SGCE-207ENST00000447873 MBD5Q9P267 1494 aa29.47■■■□□ 2.31
SGCE-207ENST00000447873 ARHGEF5Q12774 1597 aa29.46■■■□□ 2.31
SGCE-207ENST00000447873 PPRC1Q5VV67 1664 aaKnown RBP29.46■■■□□ 2.31
SGCE-207ENST00000447873 ADGRL1O94910 1474 aa29.46■■■□□ 2.31
SGCE-207ENST00000447873 TEX14Q8IWB6 1497 aa29.45■■■□□ 2.31
SGCE-207ENST00000447873 ABCC5O15440 1437 aa29.45■■■□□ 2.31
SGCE-207ENST00000447873 RSPH4AQ5TD94 716 aa29.44■■■□□ 2.3
SGCE-207ENST00000447873 ARHGEF12Q9NZN5 1544 aa29.43■■■□□ 2.3
SGCE-207ENST00000447873 PTPRKQ15262 1439 aa29.43■■■□□ 2.3
SGCE-207ENST00000447873 CROCC2H7BZ55 1655 aa29.42■■■□□ 2.3
SGCE-207ENST00000447873 CCDC141Q6ZP82 1450 aa29.42■■■□□ 2.3
SGCE-207ENST00000447873 SCAPERQ9BY12 1400 aa29.41■■■□□ 2.3
SGCE-207ENST00000447873 TSPY4P0CV99 314 aa29.38■■■□□ 2.29
SGCE-207ENST00000447873 TSPY10P0CW01 314 aa29.38■■■□□ 2.29
SGCE-207ENST00000447873 CHIC2Q9UKJ5 165 aa29.38■■■□□ 2.29
SGCE-207ENST00000447873 TRAPPC8Q9Y2L5 1435 aa29.36■■■□□ 2.29
SGCE-207ENST00000447873 SHANK2Q9UPX8 1470 aa29.35■■■□□ 2.29
SGCE-207ENST00000447873 C9orf84Q5VXU9 1444 aa29.33■■■□□ 2.29
SGCE-207ENST00000447873 ADGBQ8N7X0 1667 aa29.32■■■□□ 2.28
SGCE-207ENST00000447873 AFAP1Q8N556 730 aa29.31■■■□□ 2.28
SGCE-207ENST00000447873 DENND4BO75064 1496 aaPredicted RBP29.29■■■□□ 2.28
SGCE-207ENST00000447873 ZNF518AQ6AHZ1 1483 aa29.29■■■□□ 2.28
SGCE-207ENST00000447873 POGZQ7Z3K3 1410 aa29.28■■■□□ 2.28
SGCE-207ENST00000447873 ROCK1Q13464 1354 aa29.28■■■□□ 2.28
SGCE-207ENST00000447873 MAST1Q9Y2H9 1570 aa29.28■■■□□ 2.28
SGCE-207ENST00000447873 ADGRL2O95490 1459 aa29.26■■■□□ 2.27
SGCE-207ENST00000447873 RRP7BPQ9NSQ0 103 aa29.26■■■□□ 2.27
SGCE-207ENST00000447873 ANKRD30AQ9BXX3 1397 aa29.25■■■□□ 2.27
SGCE-207ENST00000447873 SPAG9O60271 1321 aaKnown RBP29.25■■■□□ 2.27
SGCE-207ENST00000447873 HFM1A2PYH4 1435 aa29.24■■■□□ 2.27
SGCE-207ENST00000447873 NCOA1Q15788 1441 aa29.23■■■□□ 2.27
SGCE-207ENST00000447873 RICTORQ6R327 1708 aa29.23■■■□□ 2.27
SGCE-207ENST00000447873 RAPGEF3O95398 923 aa29.22■■■□□ 2.27
SGCE-207ENST00000447873 SETD5Q9C0A6 1442 aa29.21■■■□□ 2.27
SGCE-207ENST00000447873 KDM5CP41229 1560 aa29.21■■■□□ 2.27
SGCE-207ENST00000447873 NAIPQ13075 1403 aa29.2■■■□□ 2.27
SGCE-207ENST00000447873 GCC2Q8IWJ2 1684 aa29.2■■■□□ 2.27
SGCE-207ENST00000447873 MYT1LQ9UL68 1186 aa29.2■■■□□ 2.26
SGCE-207ENST00000447873 RTEL1-TNFRSF6BF6WH68 1400 aa29.2■■■□□ 2.26
SGCE-207ENST00000447873 ZFYVE16Q7Z3T8 1539 aa29.18■■■□□ 2.26
SGCE-207ENST00000447873 INO80Q9ULG1 1556 aaPredicted RBP29.18■■■□□ 2.26
SGCE-207ENST00000447873 ATP7AQ04656 1500 aa29.18■■■□□ 2.26
SGCE-207ENST00000447873 PLXNC1O60486 1568 aa29.17■■■□□ 2.26
SGCE-207ENST00000447873 FRMPD1Q5SYB0 1578 aa29.16■■■□□ 2.26
SGCE-207ENST00000447873 HECW2Q9P2P5 1572 aa29.15■■■□□ 2.26
SGCE-207ENST00000447873 KIF15Q9NS87 1388 aa29.15■■■□□ 2.26
SGCE-207ENST00000447873 RAB3GAP2Q9H2M9 1393 aa29.14■■■□□ 2.26
SGCE-207ENST00000447873 MLH3Q9UHC1 1453 aa29.14■■■□□ 2.26
SGCE-207ENST00000447873 KIDINS220Q9ULH0 1771 aa29.13■■■□□ 2.25
SGCE-207ENST00000447873 COL17A1Q9UMD9 1497 aaPredicted RBP29.12■■■□□ 2.25
SGCE-207ENST00000447873 ZMYM4Q5VZL5 1548 aa29.09■■■□□ 2.25
SGCE-207ENST00000447873 ANKRD50Q9ULJ7 1429 aa29.07■■■□□ 2.24
SGCE-207ENST00000447873 DUOX2Q9NRD8 1548 aa29.06■■■□□ 2.24
SGCE-207ENST00000447873 HRCP23327 699 aa29.05■■■□□ 2.24
SGCE-207ENST00000447873 KDM6BO15054 1643 aa29.05■■■□□ 2.24
SGCE-207ENST00000447873 MAGI2Q86UL8 1455 aa29.03■■■□□ 2.24
SGCE-207ENST00000447873 ABCA6Q8N139 1617 aa29.01■■■□□ 2.24
SGCE-207ENST00000447873 ERBINQ96RT1 1412 aa28.99■■■□□ 2.23
SGCE-207ENST00000447873 YEATS2Q9ULM3 1422 aa28.98■■■□□ 2.23
SGCE-207ENST00000447873 DIP2CQ9Y2E4 1556 aa28.98■■■□□ 2.23
SGCE-207ENST00000447873 DHX29Q7Z478 1369 aaKnown RBP28.96■■■□□ 2.23
SGCE-207ENST00000447873 A2MP01023 1474 aa28.96■■■□□ 2.23
SGCE-207ENST00000447873 ACIN1Q9UKV3 1341 aaKnown RBP28.95■■■□□ 2.23
SGCE-207ENST00000447873 TRIM52Q96A61 297 aa28.92■■■□□ 2.22
SGCE-207ENST00000447873 EIF2AK4Q9P2K8 1649 aaKnown RBP28.89■■■□□ 2.22
SGCE-207ENST00000447873 ARHGEF40Q8TER5 1519 aa28.89■■■□□ 2.22
SGCE-207ENST00000447873 ATP10AO60312 1499 aa28.89■■■□□ 2.22
SGCE-207ENST00000447873 KIF3BO15066 747 aa28.84■■■□□ 2.21
SGCE-207ENST00000447873 CCER1Q8TC90 406 aaPredicted RBP28.84■■■□□ 2.21
SGCE-207ENST00000447873 UNC13BO14795 1591 aa28.83■■■□□ 2.21
SGCE-207ENST00000447873 REREQ9P2R6 1566 aa28.83■■■□□ 2.21
SGCE-207ENST00000447873 DHX57Q6P158 1386 aaKnown RBP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms