RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 SIGLEC1Q9BZZ2 1709 aa27.1■■□□□ 1.93
LIME1-202ENST00000444951 PLCH2O75038 1416 aa27.1■■□□□ 1.93
LIME1-202ENST00000444951 ARID4BQ4LE39 1312 aaPredicted RBP27.1■■□□□ 1.93
LIME1-202ENST00000444951 YEATS2Q9ULM3 1422 aa27.09■■□□□ 1.93
LIME1-202ENST00000444951 MYO5CQ9NQX4 1742 aa27.06■■□□□ 1.92
LIME1-202ENST00000444951 SCAPERQ9BY12 1400 aa27.05■■□□□ 1.92
LIME1-202ENST00000444951 ZFYVE16Q7Z3T8 1539 aa27.05■■□□□ 1.92
LIME1-202ENST00000444951 POGZQ7Z3K3 1410 aa27.04■■□□□ 1.92
LIME1-202ENST00000444951 TROQ12816 1431 aaPredicted RBP27.03■■□□□ 1.92
LIME1-202ENST00000444951 ILDR1Q86SU0 546 aaPredicted RBP27.03■■□□□ 1.92
LIME1-202ENST00000444951 RIMS1Q86UR5 1692 aaKnown RBP27.02■■□□□ 1.92
LIME1-202ENST00000444951 APLP2Q06481 763 aa26.99■■□□□ 1.91
LIME1-202ENST00000444951 CDK11AQ9UQ88 783 aaPredicted RBP26.98■■□□□ 1.91
LIME1-202ENST00000444951 CCDC18Q5T9S5 1454 aa26.98■■□□□ 1.91
LIME1-202ENST00000444951 MAGI2Q86UL8 1455 aa26.98■■□□□ 1.91
LIME1-202ENST00000444951 EFCAB2Q5VUJ9 269 aa26.95■■□□□ 1.9
LIME1-202ENST00000444951 ARHGAP5Q13017 1502 aa26.93■■□□□ 1.9
LIME1-202ENST00000444951 CDC42BPBQ9Y5S2 1711 aa26.91■■□□□ 1.9
LIME1-202ENST00000444951 TIAM1Q13009 1591 aa26.9■■□□□ 1.9
LIME1-202ENST00000444951 LMTK3Q96Q04 1460 aa26.9■■□□□ 1.9
LIME1-202ENST00000444951 MLECQ14165 292 aa26.88■■□□□ 1.89
LIME1-202ENST00000444951 ATP10AO60312 1499 aa26.87■■□□□ 1.89
LIME1-202ENST00000444951 KDM5CP41229 1560 aa26.86■■□□□ 1.89
LIME1-202ENST00000444951 PLPPR3Q6T4P5 718 aa26.86■■□□□ 1.89
LIME1-202ENST00000444951 FER1L4A9Z1Z3 1794 aa26.86■■□□□ 1.89
LIME1-202ENST00000444951 PREX2Q70Z35 1606 aa26.86■■□□□ 1.89
LIME1-202ENST00000444951 AFAP1Q8N556 730 aa26.85■■□□□ 1.89
LIME1-202ENST00000444951 ZNF518AQ6AHZ1 1483 aa26.85■■□□□ 1.89
LIME1-202ENST00000444951 C9orf84Q5VXU9 1444 aa26.84■■□□□ 1.89
LIME1-202ENST00000444951 PPARGC1BQ86YN6 1023 aaKnown RBP26.84■■□□□ 1.89
LIME1-202ENST00000444951 MTUS2Q5JR59 1369 aa26.84■■□□□ 1.89
LIME1-202ENST00000444951 KANK4Q5T7N3 995 aaPredicted RBP26.82■■□□□ 1.88
LIME1-202ENST00000444951 MAP3K1Q13233 1512 aa26.81■■□□□ 1.88
LIME1-202ENST00000444951 ARHGEF12Q9NZN5 1544 aa26.81■■□□□ 1.88
LIME1-202ENST00000444951 ABCC1P33527 1531 aa26.8■■□□□ 1.88
LIME1-202ENST00000444951 CDC42BPAQ5VT25 1732 aa26.79■■□□□ 1.88
LIME1-202ENST00000444951 DIP2CQ9Y2E4 1556 aa26.79■■□□□ 1.88
LIME1-202ENST00000444951 TRAPPC8Q9Y2L5 1435 aa26.78■■□□□ 1.88
LIME1-202ENST00000444951 LRRC9Q6ZRR7 1453 aa26.78■■□□□ 1.88
LIME1-202ENST00000444951 ITSN2Q9NZM3 1697 aa26.77■■□□□ 1.88
LIME1-202ENST00000444951 ABCA6Q8N139 1617 aa26.76■■□□□ 1.87
LIME1-202ENST00000444951 HSPA2P54652 639 aa26.76■■□□□ 1.87
LIME1-202ENST00000444951 EHBP1L1Q8N3D4 1523 aa26.75■■□□□ 1.87
LIME1-202ENST00000444951 MLH3Q9UHC1 1453 aa26.72■■□□□ 1.87
LIME1-202ENST00000444951 MYT1LQ9UL68 1186 aa26.7■■□□□ 1.86
LIME1-202ENST00000444951 REREQ9P2R6 1566 aa26.7■■□□□ 1.86
LIME1-202ENST00000444951 SAMD9LQ8IVG5 1584 aa26.68■■□□□ 1.86
LIME1-202ENST00000444951 CEBPAP49715 358 aaPredicted RBP26.68■■□□□ 1.86
LIME1-202ENST00000444951 KIDINS220Q9ULH0 1771 aa26.68■■□□□ 1.86
LIME1-202ENST00000444951 GPATCH8Q9UKJ3 1502 aaKnown RBP26.67■■□□□ 1.86
LIME1-202ENST00000444951 SUPT6HQ7KZ85 1726 aaKnown RBP26.65■■□□□ 1.86
LIME1-202ENST00000444951 ZNF777Q9ULD5 760 aaPredicted RBP26.63■■□□□ 1.85
LIME1-202ENST00000444951 SYCP2Q9BX26 1530 aa26.63■■□□□ 1.85
LIME1-202ENST00000444951 NCOA2Q15596 1464 aa26.62■■□□□ 1.85
LIME1-202ENST00000444951 PREX1Q8TCU6 1659 aa26.6■■□□□ 1.85
LIME1-202ENST00000444951 AGLP35573 1532 aa26.6■■□□□ 1.85
LIME1-202ENST00000444951 HNRNPMP52272 730 aaKnown RBP eCLIP26.57■■□□□ 1.84
LIME1-202ENST00000444951 FBXO41Q8TF61 875 aa26.57■■□□□ 1.84
LIME1-202ENST00000444951 CCNB3Q8WWL7 1395 aa26.57■■□□□ 1.84
LIME1-202ENST00000444951 C3P01024 1663 aa26.56■■□□□ 1.84
LIME1-202ENST00000444951 CFDP1Q9UEE9 299 aaPredicted RBP26.51■■□□□ 1.83
LIME1-202ENST00000444951 SPAG9O60271 1321 aaKnown RBP26.5■■□□□ 1.83
LIME1-202ENST00000444951 INO80Q9ULG1 1556 aaPredicted RBP26.5■■□□□ 1.83
LIME1-202ENST00000444951 ATP7AQ04656 1500 aa26.49■■□□□ 1.83
LIME1-202ENST00000444951 KIAA1107Q9UPP5 1409 aa26.49■■□□□ 1.83
LIME1-202ENST00000444951 SETD1BQ9UPS6 1966 aaKnown RBP26.49■■□□□ 1.83
LIME1-202ENST00000444951 STRCQ7RTU9 1775 aa26.48■■□□□ 1.83
LIME1-202ENST00000444951 PLEKHH2Q8IVE3 1493 aa26.47■■□□□ 1.83
LIME1-202ENST00000444951 UHRF1BP1Q6BDS2 1440 aa26.47■■□□□ 1.83
LIME1-202ENST00000444951 ZNF644Q9H582 1327 aaPredicted RBP26.46■■□□□ 1.83
LIME1-202ENST00000444951 MYOM3Q5VTT5 1437 aa26.44■■□□□ 1.82
LIME1-202ENST00000444951 PLXNC1O60486 1568 aa26.44■■□□□ 1.82
LIME1-202ENST00000444951 ESF1Q9H501 851 aaKnown RBP26.41■■□□□ 1.82
LIME1-202ENST00000444951 CNTLNQ9NXG0 1405 aa26.4■■□□□ 1.82
LIME1-202ENST00000444951 A2MP01023 1474 aa26.4■■□□□ 1.82
LIME1-202ENST00000444951 MBD5Q9P267 1494 aa26.4■■□□□ 1.82
LIME1-202ENST00000444951 MROH2AA6NES4 1674 aa26.38■■□□□ 1.81
LIME1-202ENST00000444951 CLTCQ00610 1675 aaKnown RBP26.36■■□□□ 1.81
LIME1-202ENST00000444951 FGD6Q6ZV73 1430 aa26.36■■□□□ 1.81
LIME1-202ENST00000444951 CERKQ8TCT0 537 aa26.35■■□□□ 1.81
LIME1-202ENST00000444951 FAM50AQ14320 339 aaKnown RBP26.33■■□□□ 1.81
LIME1-202ENST00000444951 ADGBQ8N7X0 1667 aa26.33■■□□□ 1.81
LIME1-202ENST00000444951 ZMYM3Q14202 1370 aa26.33■■□□□ 1.8
LIME1-202ENST00000444951 MIA2Q96PC5 1412 aa26.32■■□□□ 1.8
LIME1-202ENST00000444951 PTPN23Q9H3S7 1636 aa26.32■■□□□ 1.8
LIME1-202ENST00000444951 CAMSAP2Q08AD1 1489 aa26.3■■□□□ 1.8
LIME1-202ENST00000444951 NPATQ14207 1427 aa26.29■■□□□ 1.8
LIME1-202ENST00000444951 GGT6Q6P531 493 aa26.28■■□□□ 1.8
LIME1-202ENST00000444951 RTEL1-TNFRSF6BF6WH68 1400 aa26.26■■□□□ 1.79
LIME1-202ENST00000444951 NCOA1Q15788 1441 aa26.26■■□□□ 1.79
LIME1-202ENST00000444951 DMRT2Q9Y5R5 561 aa26.25■■□□□ 1.79
LIME1-202ENST00000444951 CCDC141Q6ZP82 1450 aa26.24■■□□□ 1.79
LIME1-202ENST00000444951 PTPRTO14522 1441 aa26.24■■□□□ 1.79
LIME1-202ENST00000444951 PTPRKQ15262 1439 aa26.23■■□□□ 1.79
LIME1-202ENST00000444951 CAMSAP1Q5T5Y3 1602 aa26.23■■□□□ 1.79
LIME1-202ENST00000444951 MYO3AQ8NEV4 1616 aa26.22■■□□□ 1.79
LIME1-202ENST00000444951 TCOF1Q13428 1488 aaKnown RBP26.22■■□□□ 1.79
LIME1-202ENST00000444951 RRBP1Q9P2E9 1410 aaKnown RBP26.22■■□□□ 1.79
LIME1-202ENST00000444951 DHX29Q7Z478 1369 aaKnown RBP26.21■■□□□ 1.79
LIME1-202ENST00000444951 ZNF142P52746 1687 aaPredicted RBP26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms