RNA–Protein interactions for RNA: ENST00000442216.1

CSNK1E-210, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 787 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-210ENST00000442216 SUPT6HQ7KZ85 1726 aaKnown RBP23.73■■□□□ 1.39
CSNK1E-210ENST00000442216 RICTORQ6R327 1708 aa23.72■■□□□ 1.39
CSNK1E-210ENST00000442216 DENND4BO75064 1496 aaPredicted RBP23.7■■□□□ 1.38
CSNK1E-210ENST00000442216 LRRC9Q6ZRR7 1453 aa23.7■■□□□ 1.38
CSNK1E-210ENST00000442216 GPATCH8Q9UKJ3 1502 aaKnown RBP23.69■■□□□ 1.38
CSNK1E-210ENST00000442216 ADGRL1O94910 1474 aa23.69■■□□□ 1.38
CSNK1E-210ENST00000442216 ITSN2Q9NZM3 1697 aa23.69■■□□□ 1.38
CSNK1E-210ENST00000442216 FRMPD1Q5SYB0 1578 aa23.69■■□□□ 1.38
CSNK1E-210ENST00000442216 APLP2Q06481 763 aa23.67■■□□□ 1.38
CSNK1E-210ENST00000442216 CCNB3Q8WWL7 1395 aa23.66■■□□□ 1.38
CSNK1E-210ENST00000442216 RAPGEF3O95398 923 aa23.65■■□□□ 1.38
CSNK1E-210ENST00000442216 SCAPERQ9BY12 1400 aa23.65■■□□□ 1.38
CSNK1E-210ENST00000442216 NCOA2Q15596 1464 aa23.63■■□□□ 1.37
CSNK1E-210ENST00000442216 ZMYM4Q5VZL5 1548 aa23.63■■□□□ 1.37
CSNK1E-210ENST00000442216 POGZQ7Z3K3 1410 aa23.61■■□□□ 1.37
CSNK1E-210ENST00000442216 ABCC1P33527 1531 aa23.61■■□□□ 1.37
CSNK1E-210ENST00000442216 KANK4Q5T7N3 995 aaPredicted RBP23.59■■□□□ 1.37
CSNK1E-210ENST00000442216 CFDP1Q9UEE9 299 aaPredicted RBP23.59■■□□□ 1.37
CSNK1E-210ENST00000442216 SAMD9LQ8IVG5 1584 aa23.59■■□□□ 1.37
CSNK1E-210ENST00000442216 ZNF518AQ6AHZ1 1483 aa23.58■■□□□ 1.37
CSNK1E-210ENST00000442216 MAGI2Q86UL8 1455 aa23.58■■□□□ 1.37
CSNK1E-210ENST00000442216 PLEKHH2Q8IVE3 1493 aa23.57■■□□□ 1.36
CSNK1E-210ENST00000442216 KDM5CP41229 1560 aa23.56■■□□□ 1.36
CSNK1E-210ENST00000442216 KIAA1107Q9UPP5 1409 aa23.55■■□□□ 1.36
CSNK1E-210ENST00000442216 ARHGEF40Q8TER5 1519 aa23.54■■□□□ 1.36
CSNK1E-210ENST00000442216 ARHGEF12Q9NZN5 1544 aa23.54■■□□□ 1.36
CSNK1E-210ENST00000442216 ZNF777Q9ULD5 760 aaPredicted RBP23.52■■□□□ 1.36
CSNK1E-210ENST00000442216 ZFYVE16Q7Z3T8 1539 aa23.51■■□□□ 1.35
CSNK1E-210ENST00000442216 SYCP2Q9BX26 1530 aa23.5■■□□□ 1.35
CSNK1E-210ENST00000442216 HECW2Q9P2P5 1572 aa23.49■■□□□ 1.35
CSNK1E-210ENST00000442216 TRAPPC8Q9Y2L5 1435 aa23.49■■□□□ 1.35
CSNK1E-210ENST00000442216 AFAP1Q8N556 730 aa23.48■■□□□ 1.35
CSNK1E-210ENST00000442216 MYOM3Q5VTT5 1437 aa23.47■■□□□ 1.35
CSNK1E-210ENST00000442216 MLH3Q9UHC1 1453 aa23.47■■□□□ 1.35
CSNK1E-210ENST00000442216 MIA2Q96PC5 1412 aa23.46■■□□□ 1.35
CSNK1E-210ENST00000442216 YEATS2Q9ULM3 1422 aa23.44■■□□□ 1.34
CSNK1E-210ENST00000442216 CAMSAP2Q08AD1 1489 aa23.43■■□□□ 1.34
CSNK1E-210ENST00000442216 HNRNPMP52272 730 aaKnown RBP eCLIP23.43■■□□□ 1.34
CSNK1E-210ENST00000442216 MBD5Q9P267 1494 aa23.43■■□□□ 1.34
CSNK1E-210ENST00000442216 KIDINS220Q9ULH0 1771 aa23.42■■□□□ 1.34
CSNK1E-210ENST00000442216 ZNF644Q9H582 1327 aaPredicted RBP23.41■■□□□ 1.34
CSNK1E-210ENST00000442216 RSPH4AQ5TD94 716 aa23.41■■□□□ 1.34
CSNK1E-210ENST00000442216 ATP10AO60312 1499 aa23.41■■□□□ 1.34
CSNK1E-210ENST00000442216 ARHGEF5Q12774 1597 aa23.4■■□□□ 1.34
CSNK1E-210ENST00000442216 DIP2CQ9Y2E4 1556 aa23.39■■□□□ 1.33
CSNK1E-210ENST00000442216 C9orf84Q5VXU9 1444 aa23.38■■□□□ 1.33
CSNK1E-210ENST00000442216 REREQ9P2R6 1566 aa23.38■■□□□ 1.33
CSNK1E-210ENST00000442216 ABCA6Q8N139 1617 aa23.37■■□□□ 1.33
CSNK1E-210ENST00000442216 INO80Q9ULG1 1556 aaPredicted RBP23.37■■□□□ 1.33
CSNK1E-210ENST00000442216 KDM4FA0A1W2PPD8 638 aa23.37■■□□□ 1.33
CSNK1E-210ENST00000442216 MYT1LQ9UL68 1186 aa23.36■■□□□ 1.33
CSNK1E-210ENST00000442216 BCORL1Q5H9F3 1711 aa23.36■■□□□ 1.33
CSNK1E-210ENST00000442216 CCDC141Q6ZP82 1450 aa23.36■■□□□ 1.33
CSNK1E-210ENST00000442216 SPAG9O60271 1321 aaKnown RBP23.35■■□□□ 1.33
CSNK1E-210ENST00000442216 ATP7AQ04656 1500 aa23.35■■□□□ 1.33
CSNK1E-210ENST00000442216 PTPN23Q9H3S7 1636 aa23.34■■□□□ 1.33
CSNK1E-210ENST00000442216 SIGLEC1Q9BZZ2 1709 aa23.34■■□□□ 1.33
CSNK1E-210ENST00000442216 RTEL1-TNFRSF6BF6WH68 1400 aa23.33■■□□□ 1.33
CSNK1E-210ENST00000442216 FGD6Q6ZV73 1430 aa23.33■■□□□ 1.32
CSNK1E-210ENST00000442216 ADAMTSL3P82987 1691 aa23.32■■□□□ 1.32
CSNK1E-210ENST00000442216 ARID4BQ4LE39 1312 aaPredicted RBP23.31■■□□□ 1.32
CSNK1E-210ENST00000442216 TCOF1Q13428 1488 aaKnown RBP23.3■■□□□ 1.32
CSNK1E-210ENST00000442216 ADGBQ8N7X0 1667 aa23.3■■□□□ 1.32
CSNK1E-210ENST00000442216 AGLP35573 1532 aa23.28■■□□□ 1.32
CSNK1E-210ENST00000442216 AEBP2Q6ZN18 517 aaPredicted RBP23.28■■□□□ 1.32
CSNK1E-210ENST00000442216 MAST1Q9Y2H9 1570 aa23.27■■□□□ 1.32
CSNK1E-210ENST00000442216 TSPY4P0CV99 314 aa23.25■■□□□ 1.31
CSNK1E-210ENST00000442216 TSPY10P0CW01 314 aa23.25■■□□□ 1.31
CSNK1E-210ENST00000442216 CROCC2H7BZ55 1655 aa23.24■■□□□ 1.31
CSNK1E-210ENST00000442216 PLXNC1O60486 1568 aa23.23■■□□□ 1.31
CSNK1E-210ENST00000442216 DNMT1P26358 1616 aaKnown RBP23.23■■□□□ 1.31
CSNK1E-210ENST00000442216 A2MP01023 1474 aa23.22■■□□□ 1.31
CSNK1E-210ENST00000442216 MADDQ8WXG6 1647 aa23.21■■□□□ 1.31
CSNK1E-210ENST00000442216 FER1L4A9Z1Z3 1794 aa23.2■■□□□ 1.3
CSNK1E-210ENST00000442216 SHANK2Q9UPX8 1470 aa23.2■■□□□ 1.3
CSNK1E-210ENST00000442216 ABCC5O15440 1437 aa23.17■■□□□ 1.3
CSNK1E-210ENST00000442216 DAPK1P53355 1430 aa23.17■■□□□ 1.3
CSNK1E-210ENST00000442216 RIMS1Q86UR5 1692 aaKnown RBP23.16■■□□□ 1.3
CSNK1E-210ENST00000442216 DHX29Q7Z478 1369 aaKnown RBP23.15■■□□□ 1.3
CSNK1E-210ENST00000442216 PPARGC1BQ86YN6 1023 aaKnown RBP23.14■■□□□ 1.29
CSNK1E-210ENST00000442216 PTPRMP28827 1452 aa23.13■■□□□ 1.29
CSNK1E-210ENST00000442216 MLECQ14165 292 aa23.13■■□□□ 1.29
CSNK1E-210ENST00000442216 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.13■■□□□ 1.29
CSNK1E-210ENST00000442216 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
CSNK1E-210ENST00000442216 EIF2AK4Q9P2K8 1649 aaKnown RBP23.08■■□□□ 1.28
CSNK1E-210ENST00000442216 DUOX2Q9NRD8 1548 aa23.08■■□□□ 1.28
CSNK1E-210ENST00000442216 PPP6R1Q9UPN7 881 aa23.06■■□□□ 1.28
CSNK1E-210ENST00000442216 CNTLNQ9NXG0 1405 aa23.06■■□□□ 1.28
CSNK1E-210ENST00000442216 RRBP1Q9P2E9 1410 aaKnown RBP23.06■■□□□ 1.28
CSNK1E-210ENST00000442216 ADGRL2O95490 1459 aa23.05■■□□□ 1.28
CSNK1E-210ENST00000442216 MROH2AA6NES4 1674 aa23.05■■□□□ 1.28
CSNK1E-210ENST00000442216 ANKRD30AQ9BXX3 1397 aa23.04■■□□□ 1.28
CSNK1E-210ENST00000442216 ESF1Q9H501 851 aaKnown RBP23.03■■□□□ 1.28
CSNK1E-210ENST00000442216 FAM135AQ9P2D6 1515 aa23.03■■□□□ 1.28
CSNK1E-210ENST00000442216 KIF15Q9NS87 1388 aa23.02■■□□□ 1.28
CSNK1E-210ENST00000442216 NCOA1Q15788 1441 aa23.02■■□□□ 1.28
CSNK1E-210ENST00000442216 RNF17Q9BXT8 1623 aaKnown RBP23.01■■□□□ 1.27
CSNK1E-210ENST00000442216 KIF3BO15066 747 aa23.01■■□□□ 1.27
CSNK1E-210ENST00000442216 ERBINQ96RT1 1412 aa23■■□□□ 1.27
CSNK1E-210ENST00000442216 C3P01024 1663 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms