RNA–Protein interactions for RNA: ENST00000441310.6

PMS1-213, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PMS1, Length 3,225 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-213ENST00000441310 JPH4Q96JJ6 628 aa23.11■■□□□ 1.29
PMS1-213ENST00000441310 EHBP1L1Q8N3D4 1523 aa23.11■■□□□ 1.29
PMS1-213ENST00000441310 SUPT6HQ7KZ85 1726 aaKnown RBP23.1■■□□□ 1.29
PMS1-213ENST00000441310 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.1■■□□□ 1.29
PMS1-213ENST00000441310 UGGT2Q9NYU1 1516 aa23.1■■□□□ 1.29
PMS1-213ENST00000441310 RTL5Q5HYW3 569 aaPredicted RBP23.09■■□□□ 1.29
PMS1-213ENST00000441310 CCDC18Q5T9S5 1454 aa23.09■■□□□ 1.29
PMS1-213ENST00000441310 HECW1Q76N89 1606 aa23.08■■□□□ 1.29
PMS1-213ENST00000441310 ZNF644Q9H582 1327 aaPredicted RBP23.07■■□□□ 1.28
PMS1-213ENST00000441310 SYNJ2O15056 1496 aa23.04■■□□□ 1.28
PMS1-213ENST00000441310 MAGI1Q96QZ7 1491 aaPredicted RBP23.03■■□□□ 1.28
PMS1-213ENST00000441310 KIAA0556O60303 1618 aa23.03■■□□□ 1.28
PMS1-213ENST00000441310 PTPN23Q9H3S7 1636 aa23.02■■□□□ 1.28
PMS1-213ENST00000441310 ZNF777Q9ULD5 760 aaPredicted RBP23.02■■□□□ 1.28
PMS1-213ENST00000441310 NAIPQ13075 1403 aa23.02■■□□□ 1.28
PMS1-213ENST00000441310 PLB1Q6P1J6 1458 aa23.02■■□□□ 1.28
PMS1-213ENST00000441310 CEP170Q5SW79 1584 aa23.01■■□□□ 1.27
PMS1-213ENST00000441310 HFM1A2PYH4 1435 aa23■■□□□ 1.27
PMS1-213ENST00000441310 NUP153P49790 1475 aaKnown RBP23■■□□□ 1.27
PMS1-213ENST00000441310 PRG4Q92954 1404 aaPredicted RBP22.97■■□□□ 1.27
PMS1-213ENST00000441310 ARHGEF11O15085 1522 aa22.96■■□□□ 1.27
PMS1-213ENST00000441310 FOXD1Q16676 465 aa22.95■■□□□ 1.27
PMS1-213ENST00000441310 TONSLQ96HA7 1378 aa22.92■■□□□ 1.26
PMS1-213ENST00000441310 UACAQ9BZF9 1416 aa22.91■■□□□ 1.26
PMS1-213ENST00000441310 CARMIL2Q6F5E8 1435 aa22.91■■□□□ 1.26
PMS1-213ENST00000441310 ANP32AP39687 249 aaKnown RBP22.91■■□□□ 1.26
PMS1-213ENST00000441310 CFDP1Q9UEE9 299 aaPredicted RBP22.91■■□□□ 1.26
PMS1-213ENST00000441310 RAPGEF6Q8TEU7 1601 aa22.9■■□□□ 1.26
PMS1-213ENST00000441310 UBE2Q2Q8WVN8 375 aa22.9■■□□□ 1.26
PMS1-213ENST00000441310 ZBTB47Q9UFB7 747 aaPredicted RBP22.89■■□□□ 1.26
PMS1-213ENST00000441310 NUP160Q12769 1436 aa22.88■■□□□ 1.25
PMS1-213ENST00000441310 IPO9Q96P70 1041 aaKnown RBP22.87■■□□□ 1.25
PMS1-213ENST00000441310 MIA2Q96PC5 1412 aa22.85■■□□□ 1.25
PMS1-213ENST00000441310 TCOF1Q13428 1488 aaKnown RBP22.85■■□□□ 1.25
PMS1-213ENST00000441310 PLEKHD1A6NEE1 506 aa22.84■■□□□ 1.25
PMS1-213ENST00000441310 KDM6BO15054 1643 aa22.83■■□□□ 1.25
PMS1-213ENST00000441310 MPHOSPH9Q99550 1183 aa22.82■■□□□ 1.24
PMS1-213ENST00000441310 TROQ12816 1431 aaPredicted RBP22.81■■□□□ 1.24
PMS1-213ENST00000441310 TIMELESSQ9UNS1 1208 aa22.8■■□□□ 1.24
PMS1-213ENST00000441310 ABCC5O15440 1437 aa22.79■■□□□ 1.24
PMS1-213ENST00000441310 DAPK1P53355 1430 aa22.78■■□□□ 1.24
PMS1-213ENST00000441310 FAM9BQ8IZU0 186 aa22.77■■□□□ 1.24
PMS1-213ENST00000441310 EIF5BO60841 1220 aaKnown RBP22.76■■□□□ 1.23
PMS1-213ENST00000441310 CCDC184Q52MB2 194 aa22.76■■□□□ 1.23
PMS1-213ENST00000441310 PTPRGP23470 1445 aa22.75■■□□□ 1.23
PMS1-213ENST00000441310 KIF14Q15058 1648 aa22.74■■□□□ 1.23
PMS1-213ENST00000441310 SLC4A1APQ9BWU0 796 aaKnown RBP22.74■■□□□ 1.23
PMS1-213ENST00000441310 LAS1LQ9Y4W2 734 aaKnown RBP22.74■■□□□ 1.23
PMS1-213ENST00000441310 GPATCH8Q9UKJ3 1502 aaKnown RBP22.71■■□□□ 1.23
PMS1-213ENST00000441310 NPM2Q86SE8 214 aaKnown RBP22.71■■□□□ 1.23
PMS1-213ENST00000441310 ATP10BO94823 1461 aa22.71■■□□□ 1.23
PMS1-213ENST00000441310 NEFMP07197 916 aa22.7■■□□□ 1.23
PMS1-213ENST00000441310 DENND4BO75064 1496 aaPredicted RBP22.7■■□□□ 1.22
PMS1-213ENST00000441310 WASHC2AQ641Q2 1341 aa22.69■■□□□ 1.22
PMS1-213ENST00000441310 CAMSAP2Q08AD1 1489 aa22.68■■□□□ 1.22
PMS1-213ENST00000441310 HNRNPMP52272 730 aaKnown RBP eCLIP22.67■■□□□ 1.224e-6■■■■□ 23.6
PMS1-213ENST00000441310 L3MBTL2Q969R5 705 aa22.67■■□□□ 1.22
PMS1-213ENST00000441310 GCC2Q8IWJ2 1684 aa22.64■■□□□ 1.21
PMS1-213ENST00000441310 BRPF3Q9ULD4 1205 aa22.64■■□□□ 1.21
PMS1-213ENST00000441310 AKNAQ7Z591 1439 aa22.63■■□□□ 1.21
PMS1-213ENST00000441310 DNMT1P26358 1616 aaKnown RBP22.62■■□□□ 1.21
PMS1-213ENST00000441310 ROCK1Q13464 1354 aa22.62■■□□□ 1.21
PMS1-213ENST00000441310 ABCA8O94911 1581 aa22.61■■□□□ 1.21
PMS1-213ENST00000441310 MRS2Q9HD23 443 aa22.61■■□□□ 1.21
PMS1-213ENST00000441310 CHD1O14646 1710 aa22.61■■□□□ 1.21
PMS1-213ENST00000441310 ZBED9Q6R2W3 1325 aa22.59■■□□□ 1.21
PMS1-213ENST00000441310 NCOA1Q15788 1441 aa22.59■■□□□ 1.21
PMS1-213ENST00000441310 TSPY4P0CV99 314 aa22.58■■□□□ 1.2
PMS1-213ENST00000441310 TSPY10P0CW01 314 aa22.58■■□□□ 1.2
PMS1-213ENST00000441310 ERCC6L2Q5T890 1561 aa22.56■■□□□ 1.2
PMS1-213ENST00000441310 HSPA5P11021 654 aaKnown RBP22.56■■□□□ 1.2
PMS1-213ENST00000441310 ZNF326Q5BKZ1 582 aaKnown RBP22.56■■□□□ 1.2
PMS1-213ENST00000441310 PKD2Q13563 968 aa22.55■■□□□ 1.2
PMS1-213ENST00000441310 C11orf95C9JLR9 678 aaPredicted RBP22.55■■□□□ 1.2
PMS1-213ENST00000441310 ANKRD30BQ9BXX2 1392 aa22.54■■□□□ 1.2
PMS1-213ENST00000441310 WASHC2CQ9Y4E1 1318 aa22.53■■□□□ 1.2
PMS1-213ENST00000441310 ANKRD30AQ9BXX3 1397 aa22.53■■□□□ 1.2
PMS1-213ENST00000441310 KDM5BQ9UGL1 1544 aa22.53■■□□□ 1.2
PMS1-213ENST00000441310 NBPF8Q3BBV2 869 aa22.52■■□□□ 1.2
PMS1-213ENST00000441310 USP35Q9P2H5 1018 aa22.52■■□□□ 1.19
PMS1-213ENST00000441310 SENP3-EIF4A1A0A087X0R7 540 aa22.51■■□□□ 1.19
PMS1-213ENST00000441310 ABCC10Q5T3U5 1492 aa22.51■■□□□ 1.19
PMS1-213ENST00000441310 ITSN2Q9NZM3 1697 aa22.5■■□□□ 1.19
PMS1-213ENST00000441310 PRKRIP1Q9H875 184 aaPredicted RBP22.48■■□□□ 1.19
PMS1-213ENST00000441310 ANKRD50Q9ULJ7 1429 aa22.48■■□□□ 1.19
PMS1-213ENST00000441310 NUP155O75694 1391 aa22.48■■□□□ 1.19
PMS1-213ENST00000441310 EIF4G2P78344 907 aaKnown RBP eCLIP22.48■■□□□ 1.19
PMS1-213ENST00000441310 CDC42BPAQ5VT25 1732 aa22.47■■□□□ 1.19
PMS1-213ENST00000441310 C9orf84Q5VXU9 1444 aa22.47■■□□□ 1.19
PMS1-213ENST00000441310 CNGB1Q14028 1251 aaPredicted RBP22.46■■□□□ 1.19
PMS1-213ENST00000441310 ADCY10Q96PN6 1610 aa22.46■■□□□ 1.19
PMS1-213ENST00000441310 PZPP20742 1482 aa22.45■■□□□ 1.18
PMS1-213ENST00000441310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.44■■□□□ 1.184e-6■■□□□ 13.1
PMS1-213ENST00000441310 PPM1GO15355 546 aaPredicted RBP22.43■■□□□ 1.18
PMS1-213ENST00000441310 CNTLNQ9NXG0 1405 aa22.42■■□□□ 1.18
PMS1-213ENST00000441310 KIF15Q9NS87 1388 aa22.41■■□□□ 1.18
PMS1-213ENST00000441310 GSE1Q14687 1217 aa22.41■■□□□ 1.18
PMS1-213ENST00000441310 RPRD2Q5VT52 1461 aaKnown RBP22.4■■□□□ 1.18
PMS1-213ENST00000441310 POLR3GLQ9BT43 218 aa22.4■■□□□ 1.18
PMS1-213ENST00000441310 KDM2AQ9Y2K7 1162 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 1256.6 ms