RNA–Protein interactions for RNA: ENST00000441074.3

LTBR-203, Transcript of lymphotoxin beta receptor, humanhuman

TSL 1 (best)

Gene LTBR, Length 2,327 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-203ENST00000441074 HECW1Q76N89 1606 aa16.63■□□□□ 0.25
LTBR-203ENST00000441074 FGD6Q6ZV73 1430 aa16.63■□□□□ 0.25
LTBR-203ENST00000441074 CCDC18Q5T9S5 1454 aa16.62■□□□□ 0.25
LTBR-203ENST00000441074 ANP32CO43423 234 aa16.62■□□□□ 0.25
LTBR-203ENST00000441074 TRIM52Q96A61 297 aa16.62■□□□□ 0.25
LTBR-203ENST00000441074 CHIC2Q9UKJ5 165 aa16.61■□□□□ 0.25
LTBR-203ENST00000441074 ZNF644Q9H582 1327 aaPredicted RBP16.6■□□□□ 0.25
LTBR-203ENST00000441074 ADCY10Q96PN6 1610 aa16.6■□□□□ 0.25
LTBR-203ENST00000441074 ABCA8O94911 1581 aa16.59■□□□□ 0.25
LTBR-203ENST00000441074 PTPRKQ15262 1439 aa16.59■□□□□ 0.25
LTBR-203ENST00000441074 MYT1LQ9UL68 1186 aa16.59■□□□□ 0.25
LTBR-203ENST00000441074 MYOM3Q5VTT5 1437 aa16.59■□□□□ 0.25
LTBR-203ENST00000441074 ABCC2Q92887 1545 aa16.58■□□□□ 0.25
LTBR-203ENST00000441074 NPM1P06748 294 aaKnown RBP eCLIP16.58■□□□□ 0.25
LTBR-203ENST00000441074 RAPGEF6Q8TEU7 1601 aa16.58■□□□□ 0.25
LTBR-203ENST00000441074 EHBP1L1Q8N3D4 1523 aa16.57■□□□□ 0.24
LTBR-203ENST00000441074 UHRF1BP1LA0JNW5 1464 aa16.57■□□□□ 0.24
LTBR-203ENST00000441074 ERICH6Q7L0X2 663 aa16.57■□□□□ 0.24
LTBR-203ENST00000441074 CDK11AQ9UQ88 783 aaPredicted RBP16.57■□□□□ 0.24
LTBR-203ENST00000441074 SIN3AQ96ST3 1273 aa16.54■□□□□ 0.24
LTBR-203ENST00000441074 RRP7BPQ9NSQ0 103 aa16.53■□□□□ 0.24
LTBR-203ENST00000441074 ZNF777Q9ULD5 760 aaPredicted RBP16.53■□□□□ 0.24
LTBR-203ENST00000441074 SUPT6HQ7KZ85 1726 aaKnown RBP16.53■□□□□ 0.24
LTBR-203ENST00000441074 ATP10BO94823 1461 aa16.52■□□□□ 0.23
LTBR-203ENST00000441074 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
LTBR-203ENST00000441074 KDM5BQ9UGL1 1544 aa16.51■□□□□ 0.23
LTBR-203ENST00000441074 ERICH6BQ5W0A0 696 aa16.5■□□□□ 0.23
LTBR-203ENST00000441074 ZCCHC11Q5TAX3 1644 aaKnown RBP16.48■□□□□ 0.23
LTBR-203ENST00000441074 TROQ12816 1431 aaPredicted RBP16.47■□□□□ 0.23
LTBR-203ENST00000441074 CFDP1Q9UEE9 299 aaPredicted RBP16.47■□□□□ 0.23
LTBR-203ENST00000441074 HFM1A2PYH4 1435 aa16.47■□□□□ 0.23
LTBR-203ENST00000441074 PTPN23Q9H3S7 1636 aa16.46■□□□□ 0.23
LTBR-203ENST00000441074 HIRIP3Q9BW71 556 aaPredicted RBP16.45■□□□□ 0.22
LTBR-203ENST00000441074 ASXL2Q76L83 1435 aa16.44■□□□□ 0.22
LTBR-203ENST00000441074 KIF14Q15058 1648 aa16.44■□□□□ 0.22
LTBR-203ENST00000441074 TONSLQ96HA7 1378 aa16.43■□□□□ 0.22
LTBR-203ENST00000441074 DEKP35659 375 aaKnown RBP16.41■□□□□ 0.22
LTBR-203ENST00000441074 PPP4R2Q9NY27 417 aa16.4■□□□□ 0.22
LTBR-203ENST00000441074 HNRNPUQ00839 825 aaKnown RBP eCLIP16.4■□□□□ 0.22
LTBR-203ENST00000441074 GPATCH8Q9UKJ3 1502 aaKnown RBP16.4■□□□□ 0.22
LTBR-203ENST00000441074 NAIPQ13075 1403 aa16.39■□□□□ 0.21
LTBR-203ENST00000441074 TRHP20396 242 aaPredicted RBP16.39■□□□□ 0.21
LTBR-203ENST00000441074 MIA2Q96PC5 1412 aa16.39■□□□□ 0.21
LTBR-203ENST00000441074 TCOF1Q13428 1488 aaKnown RBP16.38■□□□□ 0.21
LTBR-203ENST00000441074 WDR7Q9Y4E6 1490 aa16.38■□□□□ 0.21
LTBR-203ENST00000441074 IRX6P78412 446 aaPredicted RBP16.38■□□□□ 0.21
LTBR-203ENST00000441074 FAM69CQ0P6D2 419 aa16.36■□□□□ 0.21
LTBR-203ENST00000441074 ABCC5O15440 1437 aa16.35■□□□□ 0.21
LTBR-203ENST00000441074 HNRNPMP52272 730 aaKnown RBP eCLIP16.35■□□□□ 0.21
LTBR-203ENST00000441074 PRKCSHP14314 528 aaPredicted RBP16.34■□□□□ 0.21
LTBR-203ENST00000441074 DAPK1P53355 1430 aa16.33■□□□□ 0.21
LTBR-203ENST00000441074 FOXD1Q16676 465 aa16.33■□□□□ 0.2
LTBR-203ENST00000441074 ABCC10Q5T3U5 1492 aa16.33■□□□□ 0.2
LTBR-203ENST00000441074 CAMSAP2Q08AD1 1489 aa16.32■□□□□ 0.2
LTBR-203ENST00000441074 AKNAQ7Z591 1439 aa16.31■□□□□ 0.2
LTBR-203ENST00000441074 GCC2Q8IWJ2 1684 aa16.31■□□□□ 0.2
LTBR-203ENST00000441074 KDM6BO15054 1643 aa16.31■□□□□ 0.2
LTBR-203ENST00000441074 DIP2BQ9P265 1576 aa16.29■□□□□ 0.2
LTBR-203ENST00000441074 NOP58Q9Y2X3 529 aaKnown RBP16.28■□□□□ 0.2
LTBR-203ENST00000441074 KIF13AQ9H1H9 1805 aa16.26■□□□□ 0.19
LTBR-203ENST00000441074 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.24■□□□□ 0.19
LTBR-203ENST00000441074 CD109Q6YHK3 1445 aa16.23■□□□□ 0.19
LTBR-203ENST00000441074 GLI2P10070 1586 aa16.23■□□□□ 0.19
LTBR-203ENST00000441074 B4GALNT3Q6L9W6 998 aa16.22■□□□□ 0.19
LTBR-203ENST00000441074 MPHOSPH9Q99550 1183 aa16.22■□□□□ 0.19
LTBR-203ENST00000441074 TTC37Q6PGP7 1564 aa16.22■□□□□ 0.19
LTBR-203ENST00000441074 DNMT1P26358 1616 aaKnown RBP16.21■□□□□ 0.19
LTBR-203ENST00000441074 NCOA1Q15788 1441 aa16.21■□□□□ 0.19
LTBR-203ENST00000441074 CDC42BPAQ5VT25 1732 aa16.21■□□□□ 0.19
LTBR-203ENST00000441074 ABCA9Q8IUA7 1624 aa16.21■□□□□ 0.19
LTBR-203ENST00000441074 TSPOAP1O95153 1857 aa16.21■□□□□ 0.18
LTBR-203ENST00000441074 DENND4BO75064 1496 aaPredicted RBP16.2■□□□□ 0.18
LTBR-203ENST00000441074 TSPY4P0CV99 314 aa16.2■□□□□ 0.18
LTBR-203ENST00000441074 TSPY10P0CW01 314 aa16.2■□□□□ 0.18
LTBR-203ENST00000441074 WASHC2AQ641Q2 1341 aa16.19■□□□□ 0.18
LTBR-203ENST00000441074 ROCK1Q13464 1354 aa16.19■□□□□ 0.18
LTBR-203ENST00000441074 ZBED9Q6R2W3 1325 aa16.18■□□□□ 0.18
LTBR-203ENST00000441074 PAK3O75914 559 aaPredicted RBP16.18■□□□□ 0.18
LTBR-203ENST00000441074 MAP3K4Q9Y6R4 1608 aa16.18■□□□□ 0.18
LTBR-203ENST00000441074 NBR1Q14596 966 aa16.18■□□□□ 0.18
LTBR-203ENST00000441074 ARHGAP5Q13017 1502 aa16.18■□□□□ 0.18
LTBR-203ENST00000441074 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
LTBR-203ENST00000441074 ITSN2Q9NZM3 1697 aa16.17■□□□□ 0.18
LTBR-203ENST00000441074 MBD5Q9P267 1494 aa16.17■□□□□ 0.18
LTBR-203ENST00000441074 C9orf84Q5VXU9 1444 aa16.16■□□□□ 0.18
LTBR-203ENST00000441074 CNTLNQ9NXG0 1405 aa16.16■□□□□ 0.18
LTBR-203ENST00000441074 HSPA5P11021 654 aaKnown RBP16.16■□□□□ 0.18
LTBR-203ENST00000441074 PLCH2O75038 1416 aa16.15■□□□□ 0.18
LTBR-203ENST00000441074 ANKRD30AQ9BXX3 1397 aa16.15■□□□□ 0.18
LTBR-203ENST00000441074 CCDC184Q52MB2 194 aa16.14■□□□□ 0.18
LTBR-203ENST00000441074 SAMD9LQ8IVG5 1584 aa16.14■□□□□ 0.17
LTBR-203ENST00000441074 EIF4G2P78344 907 aaKnown RBP eCLIP16.13■□□□□ 0.17
LTBR-203ENST00000441074 AFAP1Q8N556 730 aa16.13■□□□□ 0.17
LTBR-203ENST00000441074 EFCAB2Q5VUJ9 269 aa16.13■□□□□ 0.17
LTBR-203ENST00000441074 MYO5CQ9NQX4 1742 aa16.13■□□□□ 0.17
LTBR-203ENST00000441074 CDC42BPBQ9Y5S2 1711 aa16.13■□□□□ 0.17
LTBR-203ENST00000441074 SYCP2Q9BX26 1530 aa16.13■□□□□ 0.17
LTBR-203ENST00000441074 IPO9Q96P70 1041 aaKnown RBP16.12■□□□□ 0.17
LTBR-203ENST00000441074 PRKRIP1Q9H875 184 aaPredicted RBP16.12■□□□□ 0.17
LTBR-203ENST00000441074 PPRC1Q5VV67 1664 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms