RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SCAPERQ9BY12 1400 aa24.17■■□□□ 1.46
LIMS3-201ENST00000437679 PREX2Q70Z35 1606 aa24.14■■□□□ 1.46
LIMS3-201ENST00000437679 VPS8Q8N3P4 1428 aa24.14■■□□□ 1.45
LIMS3-201ENST00000437679 CDC42BPBQ9Y5S2 1711 aa24.14■■□□□ 1.45
LIMS3-201ENST00000437679 POGZQ7Z3K3 1410 aa24.11■■□□□ 1.45
LIMS3-201ENST00000437679 ZMYM4Q5VZL5 1548 aa24.1■■□□□ 1.45
LIMS3-201ENST00000437679 CDC42BPAQ5VT25 1732 aa24.1■■□□□ 1.45
LIMS3-201ENST00000437679 EHBP1L1Q8N3D4 1523 aa24.1■■□□□ 1.45
LIMS3-201ENST00000437679 ARHGEF40Q8TER5 1519 aa24.08■■□□□ 1.45
LIMS3-201ENST00000437679 MAGI2Q86UL8 1455 aa24.07■■□□□ 1.44
LIMS3-201ENST00000437679 CCNB3Q8WWL7 1395 aa24.06■■□□□ 1.44
LIMS3-201ENST00000437679 GPATCH8Q9UKJ3 1502 aaKnown RBP24.06■■□□□ 1.44
LIMS3-201ENST00000437679 ZNF518AQ6AHZ1 1483 aa24.05■■□□□ 1.44
LIMS3-201ENST00000437679 ZFYVE16Q7Z3T8 1539 aa24.05■■□□□ 1.44
LIMS3-201ENST00000437679 TIAM1Q13009 1591 aa24.03■■□□□ 1.44
LIMS3-201ENST00000437679 ZNF777Q9ULD5 760 aaPredicted RBP24.03■■□□□ 1.44
LIMS3-201ENST00000437679 ARID4BQ4LE39 1312 aaPredicted RBP24.03■■□□□ 1.44
LIMS3-201ENST00000437679 ABCC1P33527 1531 aa24.02■■□□□ 1.44
LIMS3-201ENST00000437679 CFDP1Q9UEE9 299 aaPredicted RBP24.02■■□□□ 1.44
LIMS3-201ENST00000437679 YEATS2Q9ULM3 1422 aa24.01■■□□□ 1.43
LIMS3-201ENST00000437679 AFAP1Q8N556 730 aa24.01■■□□□ 1.43
LIMS3-201ENST00000437679 MYT1LQ9UL68 1186 aa23.99■■□□□ 1.43
LIMS3-201ENST00000437679 ITSN2Q9NZM3 1697 aa23.99■■□□□ 1.43
LIMS3-201ENST00000437679 KDM5CP41229 1560 aa23.98■■□□□ 1.43
LIMS3-201ENST00000437679 SUPT6HQ7KZ85 1726 aaKnown RBP23.97■■□□□ 1.43
LIMS3-201ENST00000437679 ARHGEF12Q9NZN5 1544 aa23.97■■□□□ 1.43
LIMS3-201ENST00000437679 SAMD9LQ8IVG5 1584 aa23.96■■□□□ 1.43
LIMS3-201ENST00000437679 TRAPPC8Q9Y2L5 1435 aa23.96■■□□□ 1.43
LIMS3-201ENST00000437679 MAP3K1Q13233 1512 aa23.95■■□□□ 1.43
LIMS3-201ENST00000437679 LRRC9Q6ZRR7 1453 aa23.94■■□□□ 1.42
LIMS3-201ENST00000437679 PLEKHH2Q8IVE3 1493 aa23.94■■□□□ 1.42
LIMS3-201ENST00000437679 HECW2Q9P2P5 1572 aa23.94■■□□□ 1.42
LIMS3-201ENST00000437679 ATP10AO60312 1499 aa23.94■■□□□ 1.42
LIMS3-201ENST00000437679 NCOA2Q15596 1464 aa23.94■■□□□ 1.42
LIMS3-201ENST00000437679 APLP2Q06481 763 aa23.93■■□□□ 1.42
LIMS3-201ENST00000437679 BCORL1Q5H9F3 1711 aa23.93■■□□□ 1.42
LIMS3-201ENST00000437679 SYCP2Q9BX26 1530 aa23.92■■□□□ 1.42
LIMS3-201ENST00000437679 MLH3Q9UHC1 1453 aa23.92■■□□□ 1.42
LIMS3-201ENST00000437679 KIAA1107Q9UPP5 1409 aa23.92■■□□□ 1.42
LIMS3-201ENST00000437679 HNRNPMP52272 730 aaKnown RBP eCLIP23.91■■□□□ 1.42
LIMS3-201ENST00000437679 ADAMTSL3P82987 1691 aa23.91■■□□□ 1.42
LIMS3-201ENST00000437679 C9orf84Q5VXU9 1444 aa23.91■■□□□ 1.42
LIMS3-201ENST00000437679 KANK4Q5T7N3 995 aaPredicted RBP23.87■■□□□ 1.41
LIMS3-201ENST00000437679 SIGLEC1Q9BZZ2 1709 aa23.86■■□□□ 1.41
LIMS3-201ENST00000437679 DIP2CQ9Y2E4 1556 aa23.85■■□□□ 1.41
LIMS3-201ENST00000437679 SPAG9O60271 1321 aaKnown RBP23.84■■□□□ 1.41
LIMS3-201ENST00000437679 ZNF644Q9H582 1327 aaPredicted RBP23.84■■□□□ 1.41
LIMS3-201ENST00000437679 ABCA6Q8N139 1617 aa23.84■■□□□ 1.41
LIMS3-201ENST00000437679 MADDQ8WXG6 1647 aa23.84■■□□□ 1.41
LIMS3-201ENST00000437679 MLECQ14165 292 aa23.83■■□□□ 1.41
LIMS3-201ENST00000437679 KIDINS220Q9ULH0 1771 aa23.83■■□□□ 1.4
LIMS3-201ENST00000437679 PTPRMP28827 1452 aa23.81■■□□□ 1.4
LIMS3-201ENST00000437679 REREQ9P2R6 1566 aa23.81■■□□□ 1.4
LIMS3-201ENST00000437679 CAMSAP2Q08AD1 1489 aa23.78■■□□□ 1.4
LIMS3-201ENST00000437679 RIMS1Q86UR5 1692 aaKnown RBP23.77■■□□□ 1.4
LIMS3-201ENST00000437679 MBD5Q9P267 1494 aa23.77■■□□□ 1.4
LIMS3-201ENST00000437679 ATP7AQ04656 1500 aa23.77■■□□□ 1.4
LIMS3-201ENST00000437679 RSPH4AQ5TD94 716 aa23.75■■□□□ 1.39
LIMS3-201ENST00000437679 INO80Q9ULG1 1556 aaPredicted RBP23.74■■□□□ 1.39
LIMS3-201ENST00000437679 FER1L4A9Z1Z3 1794 aa23.74■■□□□ 1.39
LIMS3-201ENST00000437679 MYOM3Q5VTT5 1437 aa23.73■■□□□ 1.39
LIMS3-201ENST00000437679 AGLP35573 1532 aa23.73■■□□□ 1.39
LIMS3-201ENST00000437679 CCDC141Q6ZP82 1450 aa23.72■■□□□ 1.39
LIMS3-201ENST00000437679 MIA2Q96PC5 1412 aa23.71■■□□□ 1.39
LIMS3-201ENST00000437679 RTEL1-TNFRSF6BF6WH68 1400 aa23.69■■□□□ 1.38
LIMS3-201ENST00000437679 PLPPR3Q6T4P5 718 aa23.68■■□□□ 1.38
LIMS3-201ENST00000437679 ARHGEF5Q12774 1597 aa23.68■■□□□ 1.38
LIMS3-201ENST00000437679 A2MP01023 1474 aa23.68■■□□□ 1.38
LIMS3-201ENST00000437679 TSPY4P0CV99 314 aa23.66■■□□□ 1.38
LIMS3-201ENST00000437679 TSPY10P0CW01 314 aa23.66■■□□□ 1.38
LIMS3-201ENST00000437679 ADGBQ8N7X0 1667 aa23.66■■□□□ 1.38
LIMS3-201ENST00000437679 ESF1Q9H501 851 aaKnown RBP23.65■■□□□ 1.38
LIMS3-201ENST00000437679 PLXNC1O60486 1568 aa23.62■■□□□ 1.37
LIMS3-201ENST00000437679 PTPN23Q9H3S7 1636 aa23.59■■□□□ 1.37
LIMS3-201ENST00000437679 DHX29Q7Z478 1369 aaKnown RBP23.58■■□□□ 1.37
LIMS3-201ENST00000437679 FGD6Q6ZV73 1430 aa23.58■■□□□ 1.36
LIMS3-201ENST00000437679 CNTLNQ9NXG0 1405 aa23.57■■□□□ 1.36
LIMS3-201ENST00000437679 CEBPAP49715 358 aaPredicted RBP23.56■■□□□ 1.36
LIMS3-201ENST00000437679 GGT6Q6P531 493 aa23.55■■□□□ 1.36
LIMS3-201ENST00000437679 MAST1Q9Y2H9 1570 aa23.55■■□□□ 1.36
LIMS3-201ENST00000437679 TCOF1Q13428 1488 aaKnown RBP23.52■■□□□ 1.36
LIMS3-201ENST00000437679 LMTK3Q96Q04 1460 aa23.51■■□□□ 1.35
LIMS3-201ENST00000437679 PPP6R1Q9UPN7 881 aa23.51■■□□□ 1.35
LIMS3-201ENST00000437679 KIF3BO15066 747 aa23.5■■□□□ 1.35
LIMS3-201ENST00000437679 C3P01024 1663 aa23.5■■□□□ 1.35
LIMS3-201ENST00000437679 ABCC5O15440 1437 aa23.49■■□□□ 1.35
LIMS3-201ENST00000437679 SETD1BQ9UPS6 1966 aaKnown RBP23.49■■□□□ 1.35
LIMS3-201ENST00000437679 MROH2AA6NES4 1674 aa23.48■■□□□ 1.35
LIMS3-201ENST00000437679 SHANK2Q9UPX8 1470 aa23.47■■□□□ 1.35
LIMS3-201ENST00000437679 CROCC2H7BZ55 1655 aa23.46■■□□□ 1.35
LIMS3-201ENST00000437679 DNMT1P26358 1616 aaKnown RBP23.46■■□□□ 1.35
LIMS3-201ENST00000437679 DAPK1P53355 1430 aa23.46■■□□□ 1.35
LIMS3-201ENST00000437679 CLTCQ00610 1675 aaKnown RBP23.46■■□□□ 1.35
LIMS3-201ENST00000437679 PREX1Q8TCU6 1659 aa23.45■■□□□ 1.34
LIMS3-201ENST00000437679 ZMYM3Q14202 1370 aa23.45■■□□□ 1.34
LIMS3-201ENST00000437679 FAM50AQ14320 339 aaKnown RBP23.45■■□□□ 1.34
LIMS3-201ENST00000437679 UHRF1BP1Q6BDS2 1440 aa23.42■■□□□ 1.34
LIMS3-201ENST00000437679 HSPA2P54652 639 aa23.41■■□□□ 1.34
LIMS3-201ENST00000437679 PPARGC1BQ86YN6 1023 aaKnown RBP23.41■■□□□ 1.34
LIMS3-201ENST00000437679 DUOX2Q9NRD8 1548 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms