RNA–Protein interactions for RNA: ENST00000436324.5

HMGN1-207, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-207ENST00000436324 ARID4BQ4LE39 1312 aaPredicted RBP29.28■■■□□ 2.28
HMGN1-207ENST00000436324 POGZQ7Z3K3 1410 aa29.25■■■□□ 2.27
HMGN1-207ENST00000436324 YEATS2Q9ULM3 1422 aa29.21■■■□□ 2.27
HMGN1-207ENST00000436324 MTUS2Q5JR59 1369 aa29.21■■■□□ 2.27
HMGN1-207ENST00000436324 ZMYM4Q5VZL5 1548 aa29.2■■■□□ 2.27
HMGN1-207ENST00000436324 ARHGEF40Q8TER5 1519 aa29.2■■■□□ 2.27
HMGN1-207ENST00000436324 AFAP1Q8N556 730 aa29.19■■■□□ 2.26
HMGN1-207ENST00000436324 CDC42BPBQ9Y5S2 1711 aa29.19■■■□□ 2.26
HMGN1-207ENST00000436324 ZNF777Q9ULD5 760 aaPredicted RBP29.18■■■□□ 2.26
HMGN1-207ENST00000436324 ZFYVE16Q7Z3T8 1539 aa29.18■■■□□ 2.26
HMGN1-207ENST00000436324 PREX2Q70Z35 1606 aa29.17■■■□□ 2.26
HMGN1-207ENST00000436324 MYT1LQ9UL68 1186 aa29.17■■■□□ 2.26
HMGN1-207ENST00000436324 MAGI2Q86UL8 1455 aa29.16■■■□□ 2.26
HMGN1-207ENST00000436324 ZNF518AQ6AHZ1 1483 aa29.12■■■□□ 2.25
HMGN1-207ENST00000436324 GPATCH8Q9UKJ3 1502 aaKnown RBP29.12■■■□□ 2.25
HMGN1-207ENST00000436324 CCNB3Q8WWL7 1395 aa29.12■■■□□ 2.25
HMGN1-207ENST00000436324 CDC42BPAQ5VT25 1732 aa29.11■■■□□ 2.25
HMGN1-207ENST00000436324 TRAPPC8Q9Y2L5 1435 aa29.09■■■□□ 2.25
HMGN1-207ENST00000436324 ARHGEF12Q9NZN5 1544 aa29.09■■■□□ 2.25
HMGN1-207ENST00000436324 CFDP1Q9UEE9 299 aaPredicted RBP29.08■■■□□ 2.25
HMGN1-207ENST00000436324 VPS8Q8N3P4 1428 aa29.08■■■□□ 2.25
HMGN1-207ENST00000436324 ABCC1P33527 1531 aa29.07■■■□□ 2.24
HMGN1-207ENST00000436324 MLECQ14165 292 aa29.07■■■□□ 2.24
HMGN1-207ENST00000436324 BCORL1Q5H9F3 1711 aa29.06■■■□□ 2.24
HMGN1-207ENST00000436324 ADAMTSL3P82987 1691 aa29.06■■■□□ 2.24
HMGN1-207ENST00000436324 EHBP1L1Q8N3D4 1523 aa29.05■■■□□ 2.24
HMGN1-207ENST00000436324 ATP10AO60312 1499 aa29.05■■■□□ 2.24
HMGN1-207ENST00000436324 HNRNPMP52272 730 aaKnown RBP eCLIP29.03■■■□□ 2.24
HMGN1-207ENST00000436324 KDM5CP41229 1560 aa29.03■■■□□ 2.24
HMGN1-207ENST00000436324 SIGLEC1Q9BZZ2 1709 aa29.02■■■□□ 2.24
HMGN1-207ENST00000436324 PTPRMP28827 1452 aa29.01■■■□□ 2.23
HMGN1-207ENST00000436324 C9orf84Q5VXU9 1444 aa29.01■■■□□ 2.23
HMGN1-207ENST00000436324 SAMD9LQ8IVG5 1584 aa29.01■■■□□ 2.23
HMGN1-207ENST00000436324 ITSN2Q9NZM3 1697 aa29■■■□□ 2.23
HMGN1-207ENST00000436324 MADDQ8WXG6 1647 aa29■■■□□ 2.23
HMGN1-207ENST00000436324 HECW2Q9P2P5 1572 aa28.98■■■□□ 2.23
HMGN1-207ENST00000436324 TIAM1Q13009 1591 aa28.97■■■□□ 2.23
HMGN1-207ENST00000436324 PLPPR3Q6T4P5 718 aa28.97■■■□□ 2.23
HMGN1-207ENST00000436324 SYCP2Q9BX26 1530 aa28.97■■■□□ 2.23
HMGN1-207ENST00000436324 MLH3Q9UHC1 1453 aa28.96■■■□□ 2.23
HMGN1-207ENST00000436324 ZNF644Q9H582 1327 aaPredicted RBP28.95■■■□□ 2.23
HMGN1-207ENST00000436324 DIP2CQ9Y2E4 1556 aa28.92■■■□□ 2.22
HMGN1-207ENST00000436324 NCOA2Q15596 1464 aa28.92■■■□□ 2.22
HMGN1-207ENST00000436324 SPAG9O60271 1321 aaKnown RBP28.92■■■□□ 2.22
HMGN1-207ENST00000436324 PLEKHH2Q8IVE3 1493 aa28.91■■■□□ 2.22
HMGN1-207ENST00000436324 RIMS1Q86UR5 1692 aaKnown RBP28.91■■■□□ 2.22
HMGN1-207ENST00000436324 KANK4Q5T7N3 995 aaPredicted RBP28.9■■■□□ 2.22
HMGN1-207ENST00000436324 KIAA1107Q9UPP5 1409 aa28.9■■■□□ 2.22
HMGN1-207ENST00000436324 ABCA6Q8N139 1617 aa28.9■■■□□ 2.22
HMGN1-207ENST00000436324 LRRC9Q6ZRR7 1453 aa28.88■■■□□ 2.21
HMGN1-207ENST00000436324 SUPT6HQ7KZ85 1726 aaKnown RBP28.88■■■□□ 2.21
HMGN1-207ENST00000436324 KIDINS220Q9ULH0 1771 aa28.85■■■□□ 2.21
HMGN1-207ENST00000436324 APLP2Q06481 763 aa28.83■■■□□ 2.21
HMGN1-207ENST00000436324 REREQ9P2R6 1566 aa28.8■■■□□ 2.2
HMGN1-207ENST00000436324 MAP3K1Q13233 1512 aa28.8■■■□□ 2.2
HMGN1-207ENST00000436324 FER1L4A9Z1Z3 1794 aa28.79■■■□□ 2.2
HMGN1-207ENST00000436324 MBD5Q9P267 1494 aa28.78■■■□□ 2.2
HMGN1-207ENST00000436324 ATP7AQ04656 1500 aa28.78■■■□□ 2.2
HMGN1-207ENST00000436324 CEBPAP49715 358 aaPredicted RBP28.76■■■□□ 2.19
HMGN1-207ENST00000436324 CAMSAP2Q08AD1 1489 aa28.75■■■□□ 2.19
HMGN1-207ENST00000436324 AGLP35573 1532 aa28.74■■■□□ 2.19
HMGN1-207ENST00000436324 ESF1Q9H501 851 aaKnown RBP28.73■■■□□ 2.19
HMGN1-207ENST00000436324 INO80Q9ULG1 1556 aaPredicted RBP28.72■■■□□ 2.19
HMGN1-207ENST00000436324 A2MP01023 1474 aa28.69■■■□□ 2.18
HMGN1-207ENST00000436324 CCDC141Q6ZP82 1450 aa28.67■■■□□ 2.18
HMGN1-207ENST00000436324 RSPH4AQ5TD94 716 aa28.66■■■□□ 2.18
HMGN1-207ENST00000436324 LMTK3Q96Q04 1460 aa28.66■■■□□ 2.18
HMGN1-207ENST00000436324 MYOM3Q5VTT5 1437 aa28.65■■■□□ 2.18
HMGN1-207ENST00000436324 RTEL1-TNFRSF6BF6WH68 1400 aa28.64■■■□□ 2.18
HMGN1-207ENST00000436324 HSPA2P54652 639 aa28.63■■■□□ 2.17
HMGN1-207ENST00000436324 TSPY4P0CV99 314 aa28.62■■■□□ 2.17
HMGN1-207ENST00000436324 TSPY10P0CW01 314 aa28.62■■■□□ 2.17
HMGN1-207ENST00000436324 GGT6Q6P531 493 aa28.62■■■□□ 2.17
HMGN1-207ENST00000436324 PLXNC1O60486 1568 aa28.59■■■□□ 2.17
HMGN1-207ENST00000436324 MIA2Q96PC5 1412 aa28.59■■■□□ 2.17
HMGN1-207ENST00000436324 ARHGEF5Q12774 1597 aa28.58■■■□□ 2.17
HMGN1-207ENST00000436324 DHX29Q7Z478 1369 aaKnown RBP28.57■■■□□ 2.16
HMGN1-207ENST00000436324 ADGBQ8N7X0 1667 aa28.57■■■□□ 2.16
HMGN1-207ENST00000436324 CNTLNQ9NXG0 1405 aa28.56■■■□□ 2.16
HMGN1-207ENST00000436324 KIF3BO15066 747 aa28.52■■■□□ 2.16
HMGN1-207ENST00000436324 C3P01024 1663 aa28.51■■■□□ 2.16
HMGN1-207ENST00000436324 ZMYM3Q14202 1370 aa28.5■■■□□ 2.15
HMGN1-207ENST00000436324 UHRF1BP1Q6BDS2 1440 aa28.46■■■□□ 2.15
HMGN1-207ENST00000436324 PREX1Q8TCU6 1659 aa28.45■■■□□ 2.15
HMGN1-207ENST00000436324 PTPN23Q9H3S7 1636 aa28.45■■■□□ 2.14
HMGN1-207ENST00000436324 CLTCQ00610 1675 aaKnown RBP28.45■■■□□ 2.14
HMGN1-207ENST00000436324 FGD6Q6ZV73 1430 aa28.44■■■□□ 2.14
HMGN1-207ENST00000436324 PPP6R1Q9UPN7 881 aa28.44■■■□□ 2.14
HMGN1-207ENST00000436324 MAST1Q9Y2H9 1570 aa28.41■■■□□ 2.14
HMGN1-207ENST00000436324 MROH2AA6NES4 1674 aa28.4■■■□□ 2.14
HMGN1-207ENST00000436324 ABCC5O15440 1437 aa28.4■■■□□ 2.14
HMGN1-207ENST00000436324 SETD1BQ9UPS6 1966 aaKnown RBP28.39■■■□□ 2.14
HMGN1-207ENST00000436324 TCOF1Q13428 1488 aaKnown RBP28.36■■■□□ 2.13
HMGN1-207ENST00000436324 FAM50AQ14320 339 aaKnown RBP28.36■■■□□ 2.13
HMGN1-207ENST00000436324 PPARGC1BQ86YN6 1023 aaKnown RBP28.36■■■□□ 2.13
HMGN1-207ENST00000436324 WASHC2CQ9Y4E1 1318 aa28.36■■■□□ 2.13
HMGN1-207ENST00000436324 NPATQ14207 1427 aa28.35■■■□□ 2.13
HMGN1-207ENST00000436324 RRP7BPQ9NSQ0 103 aa28.35■■■□□ 2.13
HMGN1-207ENST00000436324 CHIC2Q9UKJ5 165 aa28.35■■■□□ 2.13
HMGN1-207ENST00000436324 DAPK1P53355 1430 aa28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms