RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PLCH2O75038 1416 aa18.17■□□□□ 0.5
COL28A1-203ENST00000435823 FANCAO15360 1455 aa18.17■□□□□ 0.5
COL28A1-203ENST00000435823 MTUS2Q5JR59 1369 aa18.15■□□□□ 0.5
COL28A1-203ENST00000435823 AKNAQ7Z591 1439 aa18.14■□□□□ 0.49
COL28A1-203ENST00000435823 EFCAB2Q5VUJ9 269 aa18.12■□□□□ 0.49
COL28A1-203ENST00000435823 ARHGAP5Q13017 1502 aa18.11■□□□□ 0.49
COL28A1-203ENST00000435823 EHBP1L1Q8N3D4 1523 aa18.11■□□□□ 0.49
COL28A1-203ENST00000435823 DENND4BO75064 1496 aaPredicted RBP18.1■□□□□ 0.49
COL28A1-203ENST00000435823 MAPK8IP2Q13387 824 aaPredicted RBP18.09■□□□□ 0.49
COL28A1-203ENST00000435823 TIAM1Q13009 1591 aa18.08■□□□□ 0.49
COL28A1-203ENST00000435823 ADGRL1O94910 1474 aa18.08■□□□□ 0.49
COL28A1-203ENST00000435823 RAPGEF3O95398 923 aa18.08■□□□□ 0.48
COL28A1-203ENST00000435823 PREX2Q70Z35 1606 aa18.08■□□□□ 0.48
COL28A1-203ENST00000435823 CDC42BPBQ9Y5S2 1711 aa18.06■□□□□ 0.48
COL28A1-203ENST00000435823 SCAPERQ9BY12 1400 aa18.06■□□□□ 0.48
COL28A1-203ENST00000435823 CDC42BPAQ5VT25 1732 aa18.05■□□□□ 0.48
COL28A1-203ENST00000435823 CCNB3Q8WWL7 1395 aa18.04■□□□□ 0.48
COL28A1-203ENST00000435823 FRMPD1Q5SYB0 1578 aa18.04■□□□□ 0.48
COL28A1-203ENST00000435823 RICTORQ6R327 1708 aa18.04■□□□□ 0.48
COL28A1-203ENST00000435823 APLP2Q06481 763 aa18.04■□□□□ 0.48
COL28A1-203ENST00000435823 MAP3K1Q13233 1512 aa18.03■□□□□ 0.48
COL28A1-203ENST00000435823 GPATCH8Q9UKJ3 1502 aaKnown RBP18.03■□□□□ 0.48
COL28A1-203ENST00000435823 SUPT6HQ7KZ85 1726 aaKnown RBP18.02■□□□□ 0.48
COL28A1-203ENST00000435823 POGZQ7Z3K3 1410 aa18.02■□□□□ 0.48
COL28A1-203ENST00000435823 LRRC9Q6ZRR7 1453 aa18.01■□□□□ 0.47
COL28A1-203ENST00000435823 CFDP1Q9UEE9 299 aaPredicted RBP17.99■□□□□ 0.47
COL28A1-203ENST00000435823 ZNF777Q9ULD5 760 aaPredicted RBP17.99■□□□□ 0.47
COL28A1-203ENST00000435823 ITSN2Q9NZM3 1697 aa17.99■□□□□ 0.47
COL28A1-203ENST00000435823 ZMYM4Q5VZL5 1548 aa17.98■□□□□ 0.47
COL28A1-203ENST00000435823 NCOA2Q15596 1464 aa17.98■□□□□ 0.47
COL28A1-203ENST00000435823 ABCC1P33527 1531 aa17.98■□□□□ 0.47
COL28A1-203ENST00000435823 ZNF518AQ6AHZ1 1483 aa17.97■□□□□ 0.47
COL28A1-203ENST00000435823 MAGI2Q86UL8 1455 aa17.96■□□□□ 0.47
COL28A1-203ENST00000435823 ARHGEF40Q8TER5 1519 aa17.96■□□□□ 0.47
COL28A1-203ENST00000435823 ZFYVE16Q7Z3T8 1539 aa17.95■□□□□ 0.46
COL28A1-203ENST00000435823 SAMD9LQ8IVG5 1584 aa17.95■□□□□ 0.46
COL28A1-203ENST00000435823 PLEKHH2Q8IVE3 1493 aa17.95■□□□□ 0.46
COL28A1-203ENST00000435823 KANK4Q5T7N3 995 aaPredicted RBP17.94■□□□□ 0.46
COL28A1-203ENST00000435823 AFAP1Q8N556 730 aa17.92■□□□□ 0.46
COL28A1-203ENST00000435823 MYT1LQ9UL68 1186 aa17.92■□□□□ 0.46
COL28A1-203ENST00000435823 ARHGEF12Q9NZN5 1544 aa17.92■□□□□ 0.46
COL28A1-203ENST00000435823 KDM5CP41229 1560 aa17.91■□□□□ 0.46
COL28A1-203ENST00000435823 KDM4FA0A1W2PPD8 638 aa17.91■□□□□ 0.46
COL28A1-203ENST00000435823 SYCP2Q9BX26 1530 aa17.91■□□□□ 0.46
COL28A1-203ENST00000435823 KIAA1107Q9UPP5 1409 aa17.9■□□□□ 0.46
COL28A1-203ENST00000435823 TRAPPC8Q9Y2L5 1435 aa17.9■□□□□ 0.46
COL28A1-203ENST00000435823 YEATS2Q9ULM3 1422 aa17.89■□□□□ 0.46
COL28A1-203ENST00000435823 HECW2Q9P2P5 1572 aa17.89■□□□□ 0.45
COL28A1-203ENST00000435823 ARID4BQ4LE39 1312 aaPredicted RBP17.89■□□□□ 0.45
COL28A1-203ENST00000435823 HNRNPMP52272 730 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL28A1-203ENST00000435823 SCAF1Q9H7N4 1312 aaKnown RBP17.88■□□□□ 0.45
COL28A1-203ENST00000435823 MLH3Q9UHC1 1453 aa17.87■□□□□ 0.45
COL28A1-203ENST00000435823 ATP10AO60312 1499 aa17.86■□□□□ 0.45
COL28A1-203ENST00000435823 C9orf84Q5VXU9 1444 aa17.85■□□□□ 0.45
COL28A1-203ENST00000435823 ZNF644Q9H582 1327 aaPredicted RBP17.85■□□□□ 0.45
COL28A1-203ENST00000435823 CAMSAP2Q08AD1 1489 aa17.84■□□□□ 0.45
COL28A1-203ENST00000435823 MYOM3Q5VTT5 1437 aa17.84■□□□□ 0.45
COL28A1-203ENST00000435823 SPAG9O60271 1321 aaKnown RBP17.83■□□□□ 0.44
COL28A1-203ENST00000435823 MIA2Q96PC5 1412 aa17.82■□□□□ 0.44
COL28A1-203ENST00000435823 DIP2CQ9Y2E4 1556 aa17.82■□□□□ 0.44
COL28A1-203ENST00000435823 BCORL1Q5H9F3 1711 aa17.81■□□□□ 0.44
COL28A1-203ENST00000435823 ABCA6Q8N139 1617 aa17.81■□□□□ 0.44
COL28A1-203ENST00000435823 KIDINS220Q9ULH0 1771 aa17.81■□□□□ 0.44
COL28A1-203ENST00000435823 MBD5Q9P267 1494 aa17.81■□□□□ 0.44
COL28A1-203ENST00000435823 RSPH4AQ5TD94 716 aa17.8■□□□□ 0.44
COL28A1-203ENST00000435823 ATP7AQ04656 1500 aa17.79■□□□□ 0.44
COL28A1-203ENST00000435823 CCDC141Q6ZP82 1450 aa17.79■□□□□ 0.44
COL28A1-203ENST00000435823 REREQ9P2R6 1566 aa17.79■□□□□ 0.44
COL28A1-203ENST00000435823 ADAMTSL3P82987 1691 aa17.78■□□□□ 0.44
COL28A1-203ENST00000435823 INO80Q9ULG1 1556 aaPredicted RBP17.78■□□□□ 0.44
COL28A1-203ENST00000435823 SIGLEC1Q9BZZ2 1709 aa17.77■□□□□ 0.44
COL28A1-203ENST00000435823 ARHGEF5Q12774 1597 aa17.76■□□□□ 0.43
COL28A1-203ENST00000435823 RTEL1-TNFRSF6BF6WH68 1400 aa17.74■□□□□ 0.43
COL28A1-203ENST00000435823 MADDQ8WXG6 1647 aa17.74■□□□□ 0.43
COL28A1-203ENST00000435823 TSPY4P0CV99 314 aa17.74■□□□□ 0.43
COL28A1-203ENST00000435823 TSPY10P0CW01 314 aa17.74■□□□□ 0.43
COL28A1-203ENST00000435823 MLECQ14165 292 aa17.74■□□□□ 0.43
COL28A1-203ENST00000435823 FGD6Q6ZV73 1430 aa17.72■□□□□ 0.43
COL28A1-203ENST00000435823 AGLP35573 1532 aa17.72■□□□□ 0.43
COL28A1-203ENST00000435823 PTPN23Q9H3S7 1636 aa17.72■□□□□ 0.43
COL28A1-203ENST00000435823 ADGBQ8N7X0 1667 aa17.71■□□□□ 0.42
COL28A1-203ENST00000435823 A2MP01023 1474 aa17.7■□□□□ 0.42
COL28A1-203ENST00000435823 PTPRMP28827 1452 aa17.69■□□□□ 0.42
COL28A1-203ENST00000435823 RIMS1Q86UR5 1692 aaKnown RBP17.69■□□□□ 0.42
COL28A1-203ENST00000435823 TCOF1Q13428 1488 aaKnown RBP17.69■□□□□ 0.42
COL28A1-203ENST00000435823 FER1L4A9Z1Z3 1794 aa17.68■□□□□ 0.42
COL28A1-203ENST00000435823 PLXNC1O60486 1568 aa17.66■□□□□ 0.42
COL28A1-203ENST00000435823 MAST1Q9Y2H9 1570 aa17.66■□□□□ 0.42
COL28A1-203ENST00000435823 ESF1Q9H501 851 aaKnown RBP17.65■□□□□ 0.42
COL28A1-203ENST00000435823 PPARGC1BQ86YN6 1023 aaKnown RBP17.64■□□□□ 0.41
COL28A1-203ENST00000435823 DHX29Q7Z478 1369 aaKnown RBP17.64■□□□□ 0.41
COL28A1-203ENST00000435823 DNMT1P26358 1616 aaKnown RBP17.63■□□□□ 0.41
COL28A1-203ENST00000435823 ABCC5O15440 1437 aa17.63■□□□□ 0.41
COL28A1-203ENST00000435823 SHANK2Q9UPX8 1470 aa17.63■□□□□ 0.41
COL28A1-203ENST00000435823 CROCC2H7BZ55 1655 aa17.62■□□□□ 0.41
COL28A1-203ENST00000435823 FAM50AQ14320 339 aaKnown RBP17.62■□□□□ 0.41
COL28A1-203ENST00000435823 DAPK1P53355 1430 aa17.62■□□□□ 0.41
COL28A1-203ENST00000435823 DCAF8L1A6NGE4 600 aa17.6■□□□□ 0.41
COL28A1-203ENST00000435823 CNTLNQ9NXG0 1405 aa17.59■□□□□ 0.41
COL28A1-203ENST00000435823 GGT6Q6P531 493 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms