RNA–Protein interactions for RNA: ENST00000431742.2

CSTF3-202, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 2 BASIC

Gene CSTF3, Length 715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-202ENST00000431742 KDM6BO15054 1643 aa22.63■■□□□ 1.21
CSTF3-202ENST00000431742 KANK4Q5T7N3 995 aaPredicted RBP22.61■■□□□ 1.21
CSTF3-202ENST00000431742 FANCAO15360 1455 aa22.6■■□□□ 1.21
CSTF3-202ENST00000431742 APLP2Q06481 763 aa22.6■■□□□ 1.21
CSTF3-202ENST00000431742 GPATCH8Q9UKJ3 1502 aaKnown RBP22.6■■□□□ 1.21
CSTF3-202ENST00000431742 ARHGAP5Q13017 1502 aa22.58■■□□□ 1.21
CSTF3-202ENST00000431742 PHLDB1Q86UU1 1377 aa22.57■■□□□ 1.2
CSTF3-202ENST00000431742 COL17A1Q9UMD9 1497 aaPredicted RBP22.55■■□□□ 1.2
CSTF3-202ENST00000431742 CCNB3Q8WWL7 1395 aa22.54■■□□□ 1.2
CSTF3-202ENST00000431742 SAMD9LQ8IVG5 1584 aa22.54■■□□□ 1.2
CSTF3-202ENST00000431742 RICTORQ6R327 1708 aa22.54■■□□□ 1.2
CSTF3-202ENST00000431742 AKNAQ7Z591 1439 aa22.53■■□□□ 1.2
CSTF3-202ENST00000431742 FRMPD1Q5SYB0 1578 aa22.52■■□□□ 1.2
CSTF3-202ENST00000431742 ABCC1P33527 1531 aa22.52■■□□□ 1.19
CSTF3-202ENST00000431742 ADGRL1O94910 1474 aa22.49■■□□□ 1.19
CSTF3-202ENST00000431742 EFCAB2Q5VUJ9 269 aa22.49■■□□□ 1.19
CSTF3-202ENST00000431742 MYOM3Q5VTT5 1437 aa22.47■■□□□ 1.19
CSTF3-202ENST00000431742 DENND4BO75064 1496 aaPredicted RBP22.44■■□□□ 1.18
CSTF3-202ENST00000431742 ARHGEF12Q9NZN5 1544 aa22.43■■□□□ 1.18
CSTF3-202ENST00000431742 POGZQ7Z3K3 1410 aa22.43■■□□□ 1.18
CSTF3-202ENST00000431742 ZMYM4Q5VZL5 1548 aa22.42■■□□□ 1.18
CSTF3-202ENST00000431742 SYCP2Q9BX26 1530 aa22.42■■□□□ 1.18
CSTF3-202ENST00000431742 SCAPERQ9BY12 1400 aa22.42■■□□□ 1.18
CSTF3-202ENST00000431742 CFDP1Q9UEE9 299 aaPredicted RBP22.42■■□□□ 1.18
CSTF3-202ENST00000431742 KDM5CP41229 1560 aa22.42■■□□□ 1.18
CSTF3-202ENST00000431742 PLEKHH2Q8IVE3 1493 aa22.41■■□□□ 1.18
CSTF3-202ENST00000431742 MIA2Q96PC5 1412 aa22.41■■□□□ 1.18
CSTF3-202ENST00000431742 CAMSAP2Q08AD1 1489 aa22.41■■□□□ 1.18
CSTF3-202ENST00000431742 KIAA1107Q9UPP5 1409 aa22.4■■□□□ 1.18
CSTF3-202ENST00000431742 PTPN23Q9H3S7 1636 aa22.39■■□□□ 1.17
CSTF3-202ENST00000431742 ZNF518AQ6AHZ1 1483 aa22.37■■□□□ 1.17
CSTF3-202ENST00000431742 FGD6Q6ZV73 1430 aa22.37■■□□□ 1.17
CSTF3-202ENST00000431742 ARHGEF5Q12774 1597 aa22.35■■□□□ 1.17
CSTF3-202ENST00000431742 RAPGEF3O95398 923 aa22.35■■□□□ 1.17
CSTF3-202ENST00000431742 TCOF1Q13428 1488 aaKnown RBP22.34■■□□□ 1.17
CSTF3-202ENST00000431742 MBD5Q9P267 1494 aa22.34■■□□□ 1.17
CSTF3-202ENST00000431742 ZNF644Q9H582 1327 aaPredicted RBP22.34■■□□□ 1.17
CSTF3-202ENST00000431742 HECW2Q9P2P5 1572 aa22.34■■□□□ 1.17
CSTF3-202ENST00000431742 TRAPPC8Q9Y2L5 1435 aa22.34■■□□□ 1.17
CSTF3-202ENST00000431742 ZNF777Q9ULD5 760 aaPredicted RBP22.34■■□□□ 1.17
CSTF3-202ENST00000431742 ARHGEF40Q8TER5 1519 aa22.33■■□□□ 1.17
CSTF3-202ENST00000431742 INO80Q9ULG1 1556 aaPredicted RBP22.31■■□□□ 1.16
CSTF3-202ENST00000431742 KIDINS220Q9ULH0 1771 aa22.3■■□□□ 1.16
CSTF3-202ENST00000431742 CROCC2H7BZ55 1655 aa22.3■■□□□ 1.16
CSTF3-202ENST00000431742 MAGI2Q86UL8 1455 aa22.3■■□□□ 1.16
CSTF3-202ENST00000431742 PPARGC1BQ86YN6 1023 aaKnown RBP22.3■■□□□ 1.16
CSTF3-202ENST00000431742 ZFYVE16Q7Z3T8 1539 aa22.28■■□□□ 1.16
CSTF3-202ENST00000431742 CCDC141Q6ZP82 1450 aa22.28■■□□□ 1.16
CSTF3-202ENST00000431742 MLH3Q9UHC1 1453 aa22.28■■□□□ 1.16
CSTF3-202ENST00000431742 DNMT1P26358 1616 aaKnown RBP22.28■■□□□ 1.16
CSTF3-202ENST00000431742 ABCA6Q8N139 1617 aa22.27■■□□□ 1.16
CSTF3-202ENST00000431742 HNRNPMP52272 730 aaKnown RBP eCLIP22.26■■□□□ 1.15
CSTF3-202ENST00000431742 AFAP1Q8N556 730 aa22.25■■□□□ 1.15
CSTF3-202ENST00000431742 DIP2CQ9Y2E4 1556 aa22.25■■□□□ 1.15
CSTF3-202ENST00000431742 ATP7AQ04656 1500 aa22.24■■□□□ 1.15
CSTF3-202ENST00000431742 MAST1Q9Y2H9 1570 aa22.24■■□□□ 1.15
CSTF3-202ENST00000431742 YEATS2Q9ULM3 1422 aa22.23■■□□□ 1.15
CSTF3-202ENST00000431742 SIGLEC1Q9BZZ2 1709 aa22.21■■□□□ 1.15
CSTF3-202ENST00000431742 ADGBQ8N7X0 1667 aa22.2■■□□□ 1.15
CSTF3-202ENST00000431742 RRBP1Q9P2E9 1410 aaKnown RBP22.2■■□□□ 1.14
CSTF3-202ENST00000431742 REREQ9P2R6 1566 aa22.2■■□□□ 1.14
CSTF3-202ENST00000431742 SHANK2Q9UPX8 1470 aa22.19■■□□□ 1.14
CSTF3-202ENST00000431742 RTEL1-TNFRSF6BF6WH68 1400 aa22.18■■□□□ 1.14
CSTF3-202ENST00000431742 RSPH4AQ5TD94 716 aa22.18■■□□□ 1.14
CSTF3-202ENST00000431742 ABCC5O15440 1437 aa22.17■■□□□ 1.14
CSTF3-202ENST00000431742 DAPK1P53355 1430 aa22.17■■□□□ 1.14
CSTF3-202ENST00000431742 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.17■■□□□ 1.14
CSTF3-202ENST00000431742 PLXNC1O60486 1568 aa22.16■■□□□ 1.14
CSTF3-202ENST00000431742 SPAG9O60271 1321 aaKnown RBP22.16■■□□□ 1.14
CSTF3-202ENST00000431742 ATP10AO60312 1499 aa22.15■■□□□ 1.14
CSTF3-202ENST00000431742 C9orf84Q5VXU9 1444 aa22.14■■□□□ 1.13
CSTF3-202ENST00000431742 FAM50AQ14320 339 aaKnown RBP22.1■■□□□ 1.13
CSTF3-202ENST00000431742 AGLP35573 1532 aa22.08■■□□□ 1.13
CSTF3-202ENST00000431742 BCORL1Q5H9F3 1711 aa22.08■■□□□ 1.12
CSTF3-202ENST00000431742 ADGRL2O95490 1459 aa22.08■■□□□ 1.12
CSTF3-202ENST00000431742 TSPY4P0CV99 314 aa22.06■■□□□ 1.12
CSTF3-202ENST00000431742 TSPY10P0CW01 314 aa22.06■■□□□ 1.12
CSTF3-202ENST00000431742 A2MP01023 1474 aa22.06■■□□□ 1.12
CSTF3-202ENST00000431742 MYT1LQ9UL68 1186 aa22.05■■□□□ 1.12
CSTF3-202ENST00000431742 PTPRKQ15262 1439 aa22.05■■□□□ 1.12
CSTF3-202ENST00000431742 ADAMTSL3P82987 1691 aa22.03■■□□□ 1.12
CSTF3-202ENST00000431742 EIF2AK4Q9P2K8 1649 aaKnown RBP22.02■■□□□ 1.12
CSTF3-202ENST00000431742 DUOX2Q9NRD8 1548 aa22.01■■□□□ 1.11
CSTF3-202ENST00000431742 NCOA1Q15788 1441 aa21.99■■□□□ 1.11
CSTF3-202ENST00000431742 DHX29Q7Z478 1369 aaKnown RBP21.99■■□□□ 1.11
CSTF3-202ENST00000431742 FER1L4A9Z1Z3 1794 aa21.97■■□□□ 1.11
CSTF3-202ENST00000431742 RNF17Q9BXT8 1623 aaKnown RBP21.97■■□□□ 1.11
CSTF3-202ENST00000431742 ROCK1Q13464 1354 aa21.97■■□□□ 1.11
CSTF3-202ENST00000431742 ANKRD30AQ9BXX3 1397 aa21.97■■□□□ 1.11
CSTF3-202ENST00000431742 KIF15Q9NS87 1388 aa21.97■■□□□ 1.11
CSTF3-202ENST00000431742 MADDQ8WXG6 1647 aa21.95■■□□□ 1.1
CSTF3-202ENST00000431742 GCC2Q8IWJ2 1684 aa21.95■■□□□ 1.1
CSTF3-202ENST00000431742 ERBINQ96RT1 1412 aa21.94■■□□□ 1.1
CSTF3-202ENST00000431742 DEPDC5O75140 1603 aa21.93■■□□□ 1.1
CSTF3-202ENST00000431742 CHIC2Q9UKJ5 165 aa21.93■■□□□ 1.1
CSTF3-202ENST00000431742 ARID4BQ4LE39 1312 aaPredicted RBP21.92■■□□□ 1.1
CSTF3-202ENST00000431742 MROH1Q8NDA8 1641 aa21.91■■□□□ 1.1
CSTF3-202ENST00000431742 RIMS1Q86UR5 1692 aaKnown RBP21.91■■□□□ 1.1
CSTF3-202ENST00000431742 KDM4FA0A1W2PPD8 638 aa21.88■■□□□ 1.09
CSTF3-202ENST00000431742 ITGAEP38570 1179 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms