RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 EIF4G1Q04637 1599 aaKnown RBP16.28■□□□□ 0.2
LDB3-205ENST00000429277 PLCB2Q00722 1185 aa16.27■□□□□ 0.2
LDB3-205ENST00000429277 HDAC5Q9UQL6 1122 aa16.25■□□□□ 0.19
LDB3-205ENST00000429277 NAP1L2Q9ULW6 460 aaPredicted RBP16.25■□□□□ 0.19
LDB3-205ENST00000429277 MYO15BQ96JP2 1530 aa16.24■□□□□ 0.19
LDB3-205ENST00000429277 RALBP1Q15311 655 aa16.23■□□□□ 0.19
LDB3-205ENST00000429277 EIF3AQ14152 1382 aaKnown RBP16.23■□□□□ 0.19
LDB3-205ENST00000429277 NAP1L5Q96NT1 182 aaPredicted RBP16.22■□□□□ 0.19
LDB3-205ENST00000429277 VPS8Q8N3P4 1428 aa16.22■□□□□ 0.19
LDB3-205ENST00000429277 FMN1Q68DA7 1419 aa16.22■□□□□ 0.19
LDB3-205ENST00000429277 TPRNQ4KMQ1 711 aa16.21■□□□□ 0.19
LDB3-205ENST00000429277 KIAA1211Q6ZU35 1233 aa16.21■□□□□ 0.19
LDB3-205ENST00000429277 HTATSF1O43719 755 aaKnown RBP16.21■□□□□ 0.19
LDB3-205ENST00000429277 TULP1O00294 542 aaPredicted RBP16.2■□□□□ 0.18
LDB3-205ENST00000429277 EFCAB2Q5VUJ9 269 aa16.2■□□□□ 0.18
LDB3-205ENST00000429277 ANKRD30AQ9BXX3 1397 aa16.19■□□□□ 0.18
LDB3-205ENST00000429277 PKD2Q13563 968 aa16.19■□□□□ 0.18
LDB3-205ENST00000429277 RWDD1Q9H446 243 aaPredicted RBP16.19■□□□□ 0.18
LDB3-205ENST00000429277 MSNP26038 577 aaKnown RBP16.18■□□□□ 0.18
LDB3-205ENST00000429277 PDS5BQ9NTI5 1447 aa16.18■□□□□ 0.18
LDB3-205ENST00000429277 SENP3-EIF4A1A0A087X0R7 540 aa16.17■□□□□ 0.18
LDB3-205ENST00000429277 HSPA5P11021 654 aaKnown RBP16.17■□□□□ 0.18
LDB3-205ENST00000429277 RSPH4AQ5TD94 716 aa16.17■□□□□ 0.18
LDB3-205ENST00000429277 B4GALNT3Q6L9W6 998 aa16.16■□□□□ 0.18
LDB3-205ENST00000429277 GBP4Q96PP9 640 aa16.16■□□□□ 0.18
LDB3-205ENST00000429277 GNL2Q13823 731 aaKnown RBP16.16■□□□□ 0.18
LDB3-205ENST00000429277 GGT6Q6P531 493 aa16.15■□□□□ 0.18
LDB3-205ENST00000429277 SPAG9O60271 1321 aaKnown RBP16.15■□□□□ 0.18
LDB3-205ENST00000429277 ROCK2O75116 1388 aaKnown RBP16.15■□□□□ 0.18
LDB3-205ENST00000429277 MLECQ14165 292 aa16.14■□□□□ 0.17
LDB3-205ENST00000429277 CCDC34Q96HJ3 373 aa16.14■□□□□ 0.17
LDB3-205ENST00000429277 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
LDB3-205ENST00000429277 PMFBP1Q8TBY8 1022 aa16.13■□□□□ 0.17
LDB3-205ENST00000429277 SYAP1Q96A49 352 aaPredicted RBP16.12■□□□□ 0.17
LDB3-205ENST00000429277 STK31Q9BXU1 1019 aa16.12■□□□□ 0.17
LDB3-205ENST00000429277 TERF2IPQ9NYB0 399 aa16.12■□□□□ 0.17
LDB3-205ENST00000429277 TAOK2Q9UL54 1235 aa16.12■□□□□ 0.17
LDB3-205ENST00000429277 U2AF1L5P0DN76 240 aaPredicted RBP16.12■□□□□ 0.17
LDB3-205ENST00000429277 U2AF1Q01081 240 aaKnown RBP eCLIP16.12■□□□□ 0.17
LDB3-205ENST00000429277 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
LDB3-205ENST00000429277 GPATCH3Q96I76 525 aa16.12■□□□□ 0.17
LDB3-205ENST00000429277 TCERG1O14776 1098 aaKnown RBP16.11■□□□□ 0.17
LDB3-205ENST00000429277 HMMRO75330 724 aa16.11■□□□□ 0.17
LDB3-205ENST00000429277 LMOD3Q0VAK6 560 aa16.11■□□□□ 0.17
LDB3-205ENST00000429277 DRC7Q8IY82 874 aa16.11■□□□□ 0.17
LDB3-205ENST00000429277 NUP155O75694 1391 aa16.11■□□□□ 0.17
LDB3-205ENST00000429277 SOX12O15370 315 aa16.11■□□□□ 0.17
LDB3-205ENST00000429277 KIAA2012Q0VF49 1180 aa16.1■□□□□ 0.17
LDB3-205ENST00000429277 RCAN3Q9UKA8 241 aa16.1■□□□□ 0.17
LDB3-205ENST00000429277 TMX4Q9H1E5 349 aaPredicted RBP16.1■□□□□ 0.17
LDB3-205ENST00000429277 SAFB2Q14151 953 aaKnown RBP eCLIP16.09■□□□□ 0.17
LDB3-205ENST00000429277 MPHOSPH9Q99550 1183 aa16.09■□□□□ 0.17
LDB3-205ENST00000429277 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.17
LDB3-205ENST00000429277 CSB-PGBD3P0DP91 1061 aa16.08■□□□□ 0.17
LDB3-205ENST00000429277 STK26Q9P289 416 aa16.08■□□□□ 0.17
LDB3-205ENST00000429277 PDE3BQ13370 1112 aa16.08■□□□□ 0.16
LDB3-205ENST00000429277 SOGA1O94964 1423 aa16.08■□□□□ 0.16
LDB3-205ENST00000429277 TPM4P67936 248 aa16.07■□□□□ 0.16
LDB3-205ENST00000429277 CSPP1Q1MSJ5 1256 aa16.06■□□□□ 0.16
LDB3-205ENST00000429277 ITPRIPQ8IWB1 547 aa16.06■□□□□ 0.16
LDB3-205ENST00000429277 ISY1Q9ULR0 285 aaKnown RBP16.06■□□□□ 0.16
LDB3-205ENST00000429277 EID1Q9Y6B2 187 aa16.05■□□□□ 0.16
LDB3-205ENST00000429277 PAK3O75914 559 aaPredicted RBP16.05■□□□□ 0.16
LDB3-205ENST00000429277 CLSTN1O94985 981 aa16.05■□□□□ 0.16
LDB3-205ENST00000429277 CECR2Q9BXF3 1484 aa16.03■□□□□ 0.16
LDB3-205ENST00000429277 CCDC18Q5T9S5 1454 aa16.02■□□□□ 0.16
LDB3-205ENST00000429277 GORABQ5T7V8 394 aa16.02■□□□□ 0.16
LDB3-205ENST00000429277 RAB3GAP2Q9H2M9 1393 aa16.02■□□□□ 0.16
LDB3-205ENST00000429277 NLRP13Q86W25 1043 aa16.02■□□□□ 0.15
LDB3-205ENST00000429277 CHMP4CQ96CF2 233 aa16.01■□□□□ 0.15
LDB3-205ENST00000429277 KIF3AQ9Y496 699 aa16.01■□□□□ 0.15
LDB3-205ENST00000429277 SMC4Q9NTJ3 1288 aa16■□□□□ 0.15
LDB3-205ENST00000429277 TAF7LQ5H9L4 462 aa15.99■□□□□ 0.15
LDB3-205ENST00000429277 UACAQ9BZF9 1416 aa15.99■□□□□ 0.15
LDB3-205ENST00000429277 KIF3BO15066 747 aa15.98■□□□□ 0.15
LDB3-205ENST00000429277 CCDC88BA6NC98 1476 aa15.98■□□□□ 0.15
LDB3-205ENST00000429277 APBB1O00213 710 aa15.98■□□□□ 0.15
LDB3-205ENST00000429277 USP35Q9P2H5 1018 aa15.97■□□□□ 0.15
LDB3-205ENST00000429277 CENPJQ9HC77 1338 aaPredicted RBP15.96■□□□□ 0.15
LDB3-205ENST00000429277 RBM19Q9Y4C8 960 aaKnown RBP15.95■□□□□ 0.14
LDB3-205ENST00000429277 KANK4Q5T7N3 995 aaPredicted RBP15.95■□□□□ 0.14
LDB3-205ENST00000429277 NGDNQ8NEJ9 315 aaKnown RBP15.94■□□□□ 0.14
LDB3-205ENST00000429277 SPRYD3Q8NCJ5 442 aa15.94■□□□□ 0.14
LDB3-205ENST00000429277 RAPGEF2Q9Y4G8 1499 aa15.94■□□□□ 0.14
LDB3-205ENST00000429277 ZNF330Q9Y3S2 320 aaPredicted RBP15.94■□□□□ 0.14
LDB3-205ENST00000429277 WASHC2CQ9Y4E1 1318 aa15.94■□□□□ 0.14
LDB3-205ENST00000429277 PHF14O94880 888 aa15.93■□□□□ 0.14
LDB3-205ENST00000429277 KIF15Q9NS87 1388 aa15.93■□□□□ 0.14
LDB3-205ENST00000429277 AMPHP49418 695 aa15.93■□□□□ 0.14
LDB3-205ENST00000429277 TRIM6-TRIM34B2RNG4 842 aa15.92■□□□□ 0.14
LDB3-205ENST00000429277 ST18O60284 1047 aa15.92■□□□□ 0.14
LDB3-205ENST00000429277 FOXD1Q16676 465 aa15.92■□□□□ 0.14
LDB3-205ENST00000429277 TDRD9Q8NDG6 1382 aaKnown RBP15.92■□□□□ 0.14
LDB3-205ENST00000429277 HSP90B1P14625 803 aaKnown RBP15.91■□□□□ 0.14
LDB3-205ENST00000429277 DEKP35659 375 aaKnown RBP15.91■□□□□ 0.14
LDB3-205ENST00000429277 RTN4Q9NQC3 1192 aaKnown RBP15.91■□□□□ 0.14
LDB3-205ENST00000429277 CHMP3Q9Y3E7 222 aa15.91■□□□□ 0.14
LDB3-205ENST00000429277 NOC3LQ8WTT2 800 aaKnown RBP15.9■□□□□ 0.14
LDB3-205ENST00000429277 NGEFQ8N5V2 710 aa15.89■□□□□ 0.13
LDB3-205ENST00000429277 L3MBTL2Q969R5 705 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms