RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 FOXD1Q16676 465 aa22.11■■□□□ 1.13
PKP4-205ENST00000426248 TONSLQ96HA7 1378 aa22.11■■□□□ 1.13
PKP4-205ENST00000426248 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.11■■□□□ 1.13
PKP4-205ENST00000426248 CEP170Q5SW79 1584 aa22.11■■□□□ 1.13
PKP4-205ENST00000426248 UGGT2Q9NYU1 1516 aa22.11■■□□□ 1.13
PKP4-205ENST00000426248 IRX6P78412 446 aaPredicted RBP22.11■■□□□ 1.13
PKP4-205ENST00000426248 DISP1Q96F81 1524 aa22.1■■□□□ 1.13
PKP4-205ENST00000426248 EIF5BO60841 1220 aaKnown RBP22.1■■□□□ 1.13
PKP4-205ENST00000426248 EFCAB2Q5VUJ9 269 aa22.1■■□□□ 1.13
PKP4-205ENST00000426248 MSH5O43196 834 aa22.07■■□□□ 1.12
PKP4-205ENST00000426248 UACAQ9BZF9 1416 aa22.07■■□□□ 1.12
PKP4-205ENST00000426248 TROQ12816 1431 aaPredicted RBP22.05■■□□□ 1.12
PKP4-205ENST00000426248 KIAA0556O60303 1618 aa22.05■■□□□ 1.12
PKP4-205ENST00000426248 SALL2Q9Y467 1007 aaPredicted RBP22.04■■□□□ 1.12
PKP4-205ENST00000426248 EHBP1L1Q8N3D4 1523 aa22.03■■□□□ 1.12
PKP4-205ENST00000426248 HIRIP3Q9BW71 556 aaPredicted RBP22.03■■□□□ 1.12
PKP4-205ENST00000426248 MAP3K1Q13233 1512 aa22.03■■□□□ 1.12
PKP4-205ENST00000426248 NUP153P49790 1475 aaKnown RBP22.02■■□□□ 1.12
PKP4-205ENST00000426248 DHX57Q6P158 1386 aaKnown RBP22.01■■□□□ 1.11
PKP4-205ENST00000426248 SAMD9Q5K651 1589 aa21.99■■□□□ 1.11
PKP4-205ENST00000426248 KDM2AQ9Y2K7 1162 aa21.96■■□□□ 1.11
PKP4-205ENST00000426248 DDX10Q13206 875 aaKnown RBP21.95■■□□□ 1.1
PKP4-205ENST00000426248 MPHOSPH9Q99550 1183 aa21.95■■□□□ 1.1
PKP4-205ENST00000426248 ANKRD30AQ9BXX3 1397 aa21.95■■□□□ 1.1
PKP4-205ENST00000426248 SUPT6HQ7KZ85 1726 aaKnown RBP21.94■■□□□ 1.1
PKP4-205ENST00000426248 ATP10BO94823 1461 aa21.94■■□□□ 1.1
PKP4-205ENST00000426248 RAPGEF6Q8TEU7 1601 aa21.93■■□□□ 1.1
PKP4-205ENST00000426248 ARHGEF11O15085 1522 aa21.92■■□□□ 1.1
PKP4-205ENST00000426248 CHGAP10645 457 aaKnown RBP21.91■■□□□ 1.1
PKP4-205ENST00000426248 RGL3Q3MIN7 710 aa21.91■■□□□ 1.1
PKP4-205ENST00000426248 PKD2Q13563 968 aa21.9■■□□□ 1.1
PKP4-205ENST00000426248 AFAP1Q8N556 730 aa21.88■■□□□ 1.09
PKP4-205ENST00000426248 SPAG9O60271 1321 aaKnown RBP21.88■■□□□ 1.09
PKP4-205ENST00000426248 TRHP20396 242 aaPredicted RBP21.88■■□□□ 1.09
PKP4-205ENST00000426248 NUP155O75694 1391 aa21.88■■□□□ 1.09
PKP4-205ENST00000426248 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
PKP4-205ENST00000426248 CHD1O14646 1710 aa21.87■■□□□ 1.09
PKP4-205ENST00000426248 MIA2Q96PC5 1412 aa21.86■■□□□ 1.09
PKP4-205ENST00000426248 RSPH4AQ5TD94 716 aa21.85■■□□□ 1.09
PKP4-205ENST00000426248 FAM69CQ0P6D2 419 aa21.83■■□□□ 1.09
PKP4-205ENST00000426248 ARHGAP5Q13017 1502 aa21.83■■□□□ 1.08
PKP4-205ENST00000426248 GGT6Q6P531 493 aa21.82■■□□□ 1.08
PKP4-205ENST00000426248 SENP3Q9H4L4 574 aaPredicted RBP21.82■■□□□ 1.08
PKP4-205ENST00000426248 MAGI3Q5TCQ9 1506 aa21.8■■□□□ 1.08
PKP4-205ENST00000426248 KIF3BO15066 747 aa21.8■■□□□ 1.08
PKP4-205ENST00000426248 CFAP43Q8NDM7 1665 aa21.8■■□□□ 1.08
PKP4-205ENST00000426248 PTPRKQ15262 1439 aa21.78■■□□□ 1.08
PKP4-205ENST00000426248 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
PKP4-205ENST00000426248 PTPN23Q9H3S7 1636 aa21.77■■□□□ 1.08
PKP4-205ENST00000426248 ESF1Q9H501 851 aaKnown RBP21.77■■□□□ 1.08
PKP4-205ENST00000426248 ANP32CO43423 234 aa21.77■■□□□ 1.08
PKP4-205ENST00000426248 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.76■■□□□ 1.073e-7■■■■□ 24.5
PKP4-205ENST00000426248 KIF15Q9NS87 1388 aa21.76■■□□□ 1.07
PKP4-205ENST00000426248 DAPK1P53355 1430 aa21.76■■□□□ 1.07
PKP4-205ENST00000426248 FANCIQ9NVI1 1328 aa21.75■■□□□ 1.07
PKP4-205ENST00000426248 GPATCH8Q9UKJ3 1502 aaKnown RBP21.75■■□□□ 1.07
PKP4-205ENST00000426248 NOP58Q9Y2X3 529 aaKnown RBP21.75■■□□□ 1.07
PKP4-205ENST00000426248 MLECQ14165 292 aa21.74■■□□□ 1.07
PKP4-205ENST00000426248 IL27Q8NEV9 243 aa21.74■■□□□ 1.07
PKP4-205ENST00000426248 NAIPQ13075 1403 aa21.74■■□□□ 1.07
PKP4-205ENST00000426248 HFM1A2PYH4 1435 aa21.73■■□□□ 1.07
PKP4-205ENST00000426248 ABCC5O15440 1437 aa21.72■■□□□ 1.07
PKP4-205ENST00000426248 CAMSAP2Q08AD1 1489 aa21.71■■□□□ 1.07
PKP4-205ENST00000426248 HNRNPUQ00839 825 aaKnown RBP eCLIP21.71■■□□□ 1.07
PKP4-205ENST00000426248 ANKRD50Q9ULJ7 1429 aa21.71■■□□□ 1.07
PKP4-205ENST00000426248 KIF14Q15058 1648 aa21.71■■□□□ 1.07
PKP4-205ENST00000426248 ARID4BQ4LE39 1312 aaPredicted RBP21.7■■□□□ 1.06
PKP4-205ENST00000426248 C9orf84Q5VXU9 1444 aa21.69■■□□□ 1.06
PKP4-205ENST00000426248 L3MBTL2Q969R5 705 aa21.69■■□□□ 1.06
PKP4-205ENST00000426248 ANP32AP39687 249 aaKnown RBP21.68■■□□□ 1.06
PKP4-205ENST00000426248 DCAF11Q8TEB1 546 aa21.67■■□□□ 1.06
PKP4-205ENST00000426248 PPP1R15AO75807 674 aaPredicted RBP21.67■■□□□ 1.06
PKP4-205ENST00000426248 RAPGEF3O95398 923 aa21.66■■□□□ 1.06
PKP4-205ENST00000426248 STAG3Q9UJ98 1225 aa21.66■■□□□ 1.06
PKP4-205ENST00000426248 NPM2Q86SE8 214 aaKnown RBP21.65■■□□□ 1.06
PKP4-205ENST00000426248 ERICH6BQ5W0A0 696 aa21.65■■□□□ 1.06
PKP4-205ENST00000426248 ABCC2Q92887 1545 aa21.64■■□□□ 1.06
PKP4-205ENST00000426248 EIF4G2P78344 907 aaKnown RBP eCLIP21.63■■□□□ 1.05
PKP4-205ENST00000426248 ZBTB47Q9UFB7 747 aaPredicted RBP21.62■■□□□ 1.05
PKP4-205ENST00000426248 TIMELESSQ9UNS1 1208 aa21.62■■□□□ 1.05
PKP4-205ENST00000426248 ASXL2Q76L83 1435 aa21.62■■□□□ 1.05
PKP4-205ENST00000426248 SENP3-EIF4A1A0A087X0R7 540 aa21.62■■□□□ 1.05
PKP4-205ENST00000426248 SCAPERQ9BY12 1400 aa21.62■■□□□ 1.05
PKP4-205ENST00000426248 ABCA8O94911 1581 aa21.61■■□□□ 1.05
PKP4-205ENST00000426248 B4GALNT3Q6L9W6 998 aa21.6■■□□□ 1.05
PKP4-205ENST00000426248 KANK1Q14678 1352 aa21.6■■□□□ 1.05
PKP4-205ENST00000426248 NCOA1Q15788 1441 aa21.58■■□□□ 1.04
PKP4-205ENST00000426248 CD109Q6YHK3 1445 aa21.58■■□□□ 1.04
PKP4-205ENST00000426248 AKNAQ7Z591 1439 aa21.55■■□□□ 1.04
PKP4-205ENST00000426248 CARD11Q9BXL7 1154 aa21.54■■□□□ 1.04
PKP4-205ENST00000426248 WASHC2CQ9Y4E1 1318 aa21.54■■□□□ 1.04
PKP4-205ENST00000426248 ROCK1Q13464 1354 aa21.54■■□□□ 1.04
PKP4-205ENST00000426248 CCDC141Q6ZP82 1450 aa21.53■■□□□ 1.04
PKP4-205ENST00000426248 PAK3O75914 559 aaPredicted RBP21.53■■□□□ 1.04
PKP4-205ENST00000426248 WDR7Q9Y4E6 1490 aa21.52■■□□□ 1.04
PKP4-205ENST00000426248 LAS1LQ9Y4W2 734 aaKnown RBP21.51■■□□□ 1.03
PKP4-205ENST00000426248 PLCH2O75038 1416 aa21.51■■□□□ 1.03
PKP4-205ENST00000426248 PLEKHH2Q8IVE3 1493 aa21.5■■□□□ 1.03
PKP4-205ENST00000426248 FANCAO15360 1455 aa21.5■■□□□ 1.03
PKP4-205ENST00000426248 TCOF1Q13428 1488 aaKnown RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms