RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 FAM69CQ0P6D2 419 aa13.99□□□□□ -0.17
HMGB4-201ENST00000425537 ITSN2Q9NZM3 1697 aa13.98□□□□□ -0.17
HMGB4-201ENST00000425537 ACIN1Q9UKV3 1341 aaKnown RBP13.98□□□□□ -0.17
HMGB4-201ENST00000425537 PLEKHD1A6NEE1 506 aa13.98□□□□□ -0.17
HMGB4-201ENST00000425537 WDR7Q9Y4E6 1490 aa13.98□□□□□ -0.17
HMGB4-201ENST00000425537 ABCC10Q5T3U5 1492 aa13.97□□□□□ -0.17
HMGB4-201ENST00000425537 KIF14Q15058 1648 aa13.94□□□□□ -0.18
HMGB4-201ENST00000425537 RAB3GAP2Q9H2M9 1393 aa13.93□□□□□ -0.18
HMGB4-201ENST00000425537 DHX57Q6P158 1386 aaKnown RBP13.92□□□□□ -0.18
HMGB4-201ENST00000425537 AKNAQ7Z591 1439 aa13.91□□□□□ -0.18
HMGB4-201ENST00000425537 HFM1A2PYH4 1435 aa13.9□□□□□ -0.19
HMGB4-201ENST00000425537 PPRC1Q5VV67 1664 aaKnown RBP13.89□□□□□ -0.19
HMGB4-201ENST00000425537 TTC37Q6PGP7 1564 aa13.89□□□□□ -0.19
HMGB4-201ENST00000425537 MAP3K4Q9Y6R4 1608 aa13.88□□□□□ -0.19
HMGB4-201ENST00000425537 GLI2P10070 1586 aa13.88□□□□□ -0.19
HMGB4-201ENST00000425537 CFDP1Q9UEE9 299 aaPredicted RBP13.87□□□□□ -0.19
HMGB4-201ENST00000425537 DNMT1P26358 1616 aaKnown RBP13.86□□□□□ -0.19
HMGB4-201ENST00000425537 GCC2Q8IWJ2 1684 aa13.85□□□□□ -0.19
HMGB4-201ENST00000425537 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.85□□□□□ -0.19
HMGB4-201ENST00000425537 GPATCH8Q9UKJ3 1502 aaKnown RBP13.85□□□□□ -0.19
HMGB4-201ENST00000425537 ABCA9Q8IUA7 1624 aa13.85□□□□□ -0.19
HMGB4-201ENST00000425537 ROCK1Q13464 1354 aa13.84□□□□□ -0.19
HMGB4-201ENST00000425537 CD109Q6YHK3 1445 aa13.83□□□□□ -0.2
HMGB4-201ENST00000425537 CAMSAP2Q08AD1 1489 aa13.83□□□□□ -0.2
HMGB4-201ENST00000425537 DAPK1P53355 1430 aa13.82□□□□□ -0.2
HMGB4-201ENST00000425537 NAIPQ13075 1403 aa13.81□□□□□ -0.2
HMGB4-201ENST00000425537 CDC42BPAQ5VT25 1732 aa13.81□□□□□ -0.2
HMGB4-201ENST00000425537 PTPRKQ15262 1439 aa13.81□□□□□ -0.2
HMGB4-201ENST00000425537 ADGBQ8N7X0 1667 aa13.79□□□□□ -0.2
HMGB4-201ENST00000425537 RSPH4AQ5TD94 716 aa13.79□□□□□ -0.2
HMGB4-201ENST00000425537 TIMELESSQ9UNS1 1208 aa13.79□□□□□ -0.2
HMGB4-201ENST00000425537 PREX2Q70Z35 1606 aa13.79□□□□□ -0.2
HMGB4-201ENST00000425537 MYO5CQ9NQX4 1742 aa13.78□□□□□ -0.2
HMGB4-201ENST00000425537 ABCC5O15440 1437 aa13.78□□□□□ -0.2
HMGB4-201ENST00000425537 CROCC2H7BZ55 1655 aa13.77□□□□□ -0.21
HMGB4-201ENST00000425537 PLEKHH2Q8IVE3 1493 aa13.77□□□□□ -0.21
HMGB4-201ENST00000425537 SHANK2Q9UPX8 1470 aa13.77□□□□□ -0.21
HMGB4-201ENST00000425537 KDM6BO15054 1643 aa13.76□□□□□ -0.21
HMGB4-201ENST00000425537 ZNF777Q9ULD5 760 aaPredicted RBP13.76□□□□□ -0.21
HMGB4-201ENST00000425537 ARHGEF5Q12774 1597 aa13.75□□□□□ -0.21
HMGB4-201ENST00000425537 ADGRL2O95490 1459 aa13.75□□□□□ -0.21
HMGB4-201ENST00000425537 ANKRD30AQ9BXX3 1397 aa13.75□□□□□ -0.21
HMGB4-201ENST00000425537 CHIC2Q9UKJ5 165 aa13.75□□□□□ -0.21
HMGB4-201ENST00000425537 CDC42BPBQ9Y5S2 1711 aa13.75□□□□□ -0.21
HMGB4-201ENST00000425537 ARHGAP5Q13017 1502 aa13.74□□□□□ -0.21
HMGB4-201ENST00000425537 TEX14Q8IWB6 1497 aa13.74□□□□□ -0.21
HMGB4-201ENST00000425537 COL17A1Q9UMD9 1497 aaPredicted RBP13.74□□□□□ -0.21
HMGB4-201ENST00000425537 TSPY4P0CV99 314 aa13.73□□□□□ -0.21
HMGB4-201ENST00000425537 TSPY10P0CW01 314 aa13.73□□□□□ -0.21
HMGB4-201ENST00000425537 RRP7BPQ9NSQ0 103 aa13.73□□□□□ -0.21
HMGB4-201ENST00000425537 ZNF644Q9H582 1327 aaPredicted RBP13.72□□□□□ -0.21
HMGB4-201ENST00000425537 FANCAO15360 1455 aa13.72□□□□□ -0.21
HMGB4-201ENST00000425537 ARAP3Q8WWN8 1544 aa13.71□□□□□ -0.21
HMGB4-201ENST00000425537 PLCH2O75038 1416 aa13.7□□□□□ -0.22
HMGB4-201ENST00000425537 CCDC141Q6ZP82 1450 aa13.69□□□□□ -0.22
HMGB4-201ENST00000425537 ZNF316A6NFI3 1004 aaPredicted RBP13.69□□□□□ -0.22
HMGB4-201ENST00000425537 PLPPR3Q6T4P5 718 aa13.69□□□□□ -0.22
HMGB4-201ENST00000425537 TRIM52Q96A61 297 aa13.69□□□□□ -0.22
HMGB4-201ENST00000425537 NCOA1Q15788 1441 aa13.69□□□□□ -0.22
HMGB4-201ENST00000425537 KIAA1107Q9UPP5 1409 aa13.69□□□□□ -0.22
HMGB4-201ENST00000425537 SAMD9LQ8IVG5 1584 aa13.68□□□□□ -0.22
HMGB4-201ENST00000425537 CFAP74Q9C0B2 1584 aa13.68□□□□□ -0.22
HMGB4-201ENST00000425537 C9orf84Q5VXU9 1444 aa13.68□□□□□ -0.22
HMGB4-201ENST00000425537 EFCAB2Q5VUJ9 269 aa13.68□□□□□ -0.22
HMGB4-201ENST00000425537 FRMPD1Q5SYB0 1578 aa13.67□□□□□ -0.22
HMGB4-201ENST00000425537 RAPGEF3O95398 923 aa13.67□□□□□ -0.22
HMGB4-201ENST00000425537 ADGRL1O94910 1474 aa13.67□□□□□ -0.22
HMGB4-201ENST00000425537 NEO1Q92859 1461 aa13.66□□□□□ -0.22
HMGB4-201ENST00000425537 MAST1Q9Y2H9 1570 aa13.66□□□□□ -0.22
HMGB4-201ENST00000425537 MBD5Q9P267 1494 aa13.65□□□□□ -0.22
HMGB4-201ENST00000425537 SCAPERQ9BY12 1400 aa13.64□□□□□ -0.23
HMGB4-201ENST00000425537 SYCP2Q9BX26 1530 aa13.64□□□□□ -0.23
HMGB4-201ENST00000425537 ARHGEF12Q9NZN5 1544 aa13.64□□□□□ -0.23
HMGB4-201ENST00000425537 RICTORQ6R327 1708 aa13.63□□□□□ -0.23
HMGB4-201ENST00000425537 ABCC1P33527 1531 aa13.63□□□□□ -0.23
HMGB4-201ENST00000425537 ANKRD50Q9ULJ7 1429 aa13.63□□□□□ -0.23
HMGB4-201ENST00000425537 TONSLQ96HA7 1378 aa13.62□□□□□ -0.23
HMGB4-201ENST00000425537 HNRNPMP52272 730 aaKnown RBP eCLIP13.62□□□□□ -0.23
HMGB4-201ENST00000425537 MPHOSPH9Q99550 1183 aa13.62□□□□□ -0.23
HMGB4-201ENST00000425537 DENND4BO75064 1496 aaPredicted RBP13.61□□□□□ -0.23
HMGB4-201ENST00000425537 NEUROD1Q13562 356 aa13.61□□□□□ -0.23
HMGB4-201ENST00000425537 TRAPPC8Q9Y2L5 1435 aa13.61□□□□□ -0.23
HMGB4-201ENST00000425537 KIF15Q9NS87 1388 aa13.6□□□□□ -0.23
HMGB4-201ENST00000425537 PLXNC1O60486 1568 aa13.6□□□□□ -0.23
HMGB4-201ENST00000425537 POGZQ7Z3K3 1410 aa13.59□□□□□ -0.23
HMGB4-201ENST00000425537 MYT1LQ9UL68 1186 aa13.59□□□□□ -0.23
HMGB4-201ENST00000425537 AFAP1Q8N556 730 aa13.58□□□□□ -0.24
HMGB4-201ENST00000425537 SLC4A1APQ9BWU0 796 aaKnown RBP13.58□□□□□ -0.24
HMGB4-201ENST00000425537 SIN3AQ96ST3 1273 aa13.57□□□□□ -0.24
HMGB4-201ENST00000425537 YEATS2Q9ULM3 1422 aa13.56□□□□□ -0.24
HMGB4-201ENST00000425537 KDM5DQ9BY66 1539 aa13.56□□□□□ -0.24
HMGB4-201ENST00000425537 DIEXFQ68CQ4 756 aaKnown RBP13.56□□□□□ -0.24
HMGB4-201ENST00000425537 RTEL1-TNFRSF6BF6WH68 1400 aa13.56□□□□□ -0.24
HMGB4-201ENST00000425537 DUOX2Q9NRD8 1548 aa13.55□□□□□ -0.24
HMGB4-201ENST00000425537 PPP1R15AO75807 674 aaPredicted RBP13.54□□□□□ -0.24
HMGB4-201ENST00000425537 ZFYVE16Q7Z3T8 1539 aa13.54□□□□□ -0.24
HMGB4-201ENST00000425537 SIGLEC1Q9BZZ2 1709 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 ERBINQ96RT1 1412 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 PZPP20742 1482 aa13.53□□□□□ -0.24
HMGB4-201ENST00000425537 ZNF518AQ6AHZ1 1483 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms