RNA–Protein interactions for RNA: ENST00000424964.6

TMEM248-204, Transcript of transmembrane protein 248, humanhuman

TSL 4

Gene TMEM248, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-204ENST00000424964 ARAP3Q8WWN8 1544 aa23.18■■□□□ 1.3
TMEM248-204ENST00000424964 SUPT6HQ7KZ85 1726 aaKnown RBP23.17■■□□□ 1.3
TMEM248-204ENST00000424964 CDC42BPAQ5VT25 1732 aa23.16■■□□□ 1.3
TMEM248-204ENST00000424964 CDC42BPBQ9Y5S2 1711 aa23.16■■□□□ 1.3
TMEM248-204ENST00000424964 PREX2Q70Z35 1606 aa23.15■■□□□ 1.3
TMEM248-204ENST00000424964 GPATCH8Q9UKJ3 1502 aaKnown RBP23.14■■□□□ 1.3
TMEM248-204ENST00000424964 NCOA2Q15596 1464 aa23.14■■□□□ 1.29
TMEM248-204ENST00000424964 CFDP1Q9UEE9 299 aaPredicted RBP23.13■■□□□ 1.29
TMEM248-204ENST00000424964 ZNF777Q9ULD5 760 aaPredicted RBP23.13■■□□□ 1.29
TMEM248-204ENST00000424964 RAPGEF3O95398 923 aa23.12■■□□□ 1.29
TMEM248-204ENST00000424964 ADGRL1O94910 1474 aa23.11■■□□□ 1.29
TMEM248-204ENST00000424964 SCAPERQ9BY12 1400 aa23.1■■□□□ 1.29
TMEM248-204ENST00000424964 DENND4BO75064 1496 aaPredicted RBP23.1■■□□□ 1.29
TMEM248-204ENST00000424964 ITSN2Q9NZM3 1697 aa23.07■■□□□ 1.28
TMEM248-204ENST00000424964 RICTORQ6R327 1708 aa23.02■■□□□ 1.28
TMEM248-204ENST00000424964 FRMPD1Q5SYB0 1578 aa23.01■■□□□ 1.27
TMEM248-204ENST00000424964 SAMD9LQ8IVG5 1584 aa23.01■■□□□ 1.27
TMEM248-204ENST00000424964 ABCC1P33527 1531 aa23■■□□□ 1.27
TMEM248-204ENST00000424964 ZNF644Q9H582 1327 aaPredicted RBP23■■□□□ 1.27
TMEM248-204ENST00000424964 POGZQ7Z3K3 1410 aa22.99■■□□□ 1.27
TMEM248-204ENST00000424964 HNRNPMP52272 730 aaKnown RBP eCLIP22.99■■□□□ 1.271e-6■■■■■ 30.8
TMEM248-204ENST00000424964 PPARGC1BQ86YN6 1023 aaKnown RBP22.99■■□□□ 1.27
TMEM248-204ENST00000424964 AFAP1Q8N556 730 aa22.99■■□□□ 1.27
TMEM248-204ENST00000424964 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
TMEM248-204ENST00000424964 ARHGEF12Q9NZN5 1544 aa22.98■■□□□ 1.27
TMEM248-204ENST00000424964 MYT1LQ9UL68 1186 aa22.97■■□□□ 1.27
TMEM248-204ENST00000424964 MYOM3Q5VTT5 1437 aa22.96■■□□□ 1.27
TMEM248-204ENST00000424964 TRAPPC8Q9Y2L5 1435 aa22.96■■□□□ 1.27
TMEM248-204ENST00000424964 ZNF518AQ6AHZ1 1483 aa22.96■■□□□ 1.27
TMEM248-204ENST00000424964 SYCP2Q9BX26 1530 aa22.95■■□□□ 1.26
TMEM248-204ENST00000424964 KIAA1107Q9UPP5 1409 aa22.94■■□□□ 1.26
TMEM248-204ENST00000424964 ZMYM4Q5VZL5 1548 aa22.92■■□□□ 1.26
TMEM248-204ENST00000424964 CAMSAP2Q08AD1 1489 aa22.92■■□□□ 1.26
TMEM248-204ENST00000424964 MIA2Q96PC5 1412 aa22.91■■□□□ 1.26
TMEM248-204ENST00000424964 MAGI2Q86UL8 1455 aa22.9■■□□□ 1.26
TMEM248-204ENST00000424964 KDM5CP41229 1560 aa22.89■■□□□ 1.25
TMEM248-204ENST00000424964 ZFYVE16Q7Z3T8 1539 aa22.88■■□□□ 1.25
TMEM248-204ENST00000424964 SPAG9O60271 1321 aaKnown RBP22.87■■□□□ 1.25
TMEM248-204ENST00000424964 YEATS2Q9ULM3 1422 aa22.87■■□□□ 1.25
TMEM248-204ENST00000424964 MBD5Q9P267 1494 aa22.85■■□□□ 1.25
TMEM248-204ENST00000424964 HECW2Q9P2P5 1572 aa22.85■■□□□ 1.25
TMEM248-204ENST00000424964 FGD6Q6ZV73 1430 aa22.85■■□□□ 1.25
TMEM248-204ENST00000424964 RSPH4AQ5TD94 716 aa22.85■■□□□ 1.25
TMEM248-204ENST00000424964 ARHGEF40Q8TER5 1519 aa22.85■■□□□ 1.25
TMEM248-204ENST00000424964 MLH3Q9UHC1 1453 aa22.84■■□□□ 1.25
TMEM248-204ENST00000424964 PTPN23Q9H3S7 1636 aa22.83■■□□□ 1.25
TMEM248-204ENST00000424964 ARID4BQ4LE39 1312 aaPredicted RBP22.82■■□□□ 1.24
TMEM248-204ENST00000424964 CCDC141Q6ZP82 1450 aa22.81■■□□□ 1.24
TMEM248-204ENST00000424964 TSPY4P0CV99 314 aa22.8■■□□□ 1.24
TMEM248-204ENST00000424964 TSPY10P0CW01 314 aa22.8■■□□□ 1.24
TMEM248-204ENST00000424964 FAM50AQ14320 339 aaKnown RBP22.8■■□□□ 1.24
TMEM248-204ENST00000424964 ATP10AO60312 1499 aa22.79■■□□□ 1.24
TMEM248-204ENST00000424964 KIDINS220Q9ULH0 1771 aa22.79■■□□□ 1.24
TMEM248-204ENST00000424964 ARHGEF5Q12774 1597 aa22.79■■□□□ 1.24
TMEM248-204ENST00000424964 TCOF1Q13428 1488 aaKnown RBP22.77■■□□□ 1.24
TMEM248-204ENST00000424964 ATP7AQ04656 1500 aa22.77■■□□□ 1.24
TMEM248-204ENST00000424964 ABCA6Q8N139 1617 aa22.75■■□□□ 1.23
TMEM248-204ENST00000424964 C9orf84Q5VXU9 1444 aa22.75■■□□□ 1.23
TMEM248-204ENST00000424964 DIP2CQ9Y2E4 1556 aa22.75■■□□□ 1.23
TMEM248-204ENST00000424964 INO80Q9ULG1 1556 aaPredicted RBP22.74■■□□□ 1.23
TMEM248-204ENST00000424964 RTEL1-TNFRSF6BF6WH68 1400 aa22.73■■□□□ 1.23
TMEM248-204ENST00000424964 KDM4FA0A1W2PPD8 638 aa22.71■■□□□ 1.23
TMEM248-204ENST00000424964 ABCC5O15440 1437 aa22.7■■□□□ 1.22
TMEM248-204ENST00000424964 MLECQ14165 292 aa22.69■■□□□ 1.22
TMEM248-204ENST00000424964 SIGLEC1Q9BZZ2 1709 aa22.68■■□□□ 1.22
TMEM248-204ENST00000424964 DAPK1P53355 1430 aa22.68■■□□□ 1.22
TMEM248-204ENST00000424964 DNMT1P26358 1616 aaKnown RBP22.67■■□□□ 1.22
TMEM248-204ENST00000424964 REREQ9P2R6 1566 aa22.66■■□□□ 1.22
TMEM248-204ENST00000424964 A2MP01023 1474 aa22.66■■□□□ 1.22
TMEM248-204ENST00000424964 MAST1Q9Y2H9 1570 aa22.65■■□□□ 1.22
TMEM248-204ENST00000424964 CHIC2Q9UKJ5 165 aa22.65■■□□□ 1.22
TMEM248-204ENST00000424964 ADGBQ8N7X0 1667 aa22.65■■□□□ 1.22
TMEM248-204ENST00000424964 BCORL1Q5H9F3 1711 aa22.64■■□□□ 1.21
TMEM248-204ENST00000424964 CROCC2H7BZ55 1655 aa22.64■■□□□ 1.21
TMEM248-204ENST00000424964 SHANK2Q9UPX8 1470 aa22.62■■□□□ 1.21
TMEM248-204ENST00000424964 ITGAEP38570 1179 aa22.62■■□□□ 1.21
TMEM248-204ENST00000424964 AEBP2Q6ZN18 517 aaPredicted RBP22.62■■□□□ 1.21
TMEM248-204ENST00000424964 AGLP35573 1532 aa22.61■■□□□ 1.21
TMEM248-204ENST00000424964 DHX29Q7Z478 1369 aaKnown RBP22.61■■□□□ 1.21
TMEM248-204ENST00000424964 RRBP1Q9P2E9 1410 aaKnown RBP22.6■■□□□ 1.21
TMEM248-204ENST00000424964 RRP7BPQ9NSQ0 103 aa22.6■■□□□ 1.21
TMEM248-204ENST00000424964 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.6■■□□□ 1.21
TMEM248-204ENST00000424964 ADAMTSL3P82987 1691 aa22.58■■□□□ 1.21
TMEM248-204ENST00000424964 ANKRD30AQ9BXX3 1397 aa22.57■■□□□ 1.2
TMEM248-204ENST00000424964 PLXNC1O60486 1568 aa22.57■■□□□ 1.2
TMEM248-204ENST00000424964 KIF15Q9NS87 1388 aa22.55■■□□□ 1.2
TMEM248-204ENST00000424964 KIF3BO15066 747 aa22.55■■□□□ 1.2
TMEM248-204ENST00000424964 GGT6Q6P531 493 aa22.55■■□□□ 1.2
TMEM248-204ENST00000424964 MADDQ8WXG6 1647 aa22.54■■□□□ 1.2
TMEM248-204ENST00000424964 ESF1Q9H501 851 aaKnown RBP22.53■■□□□ 1.2
TMEM248-204ENST00000424964 PTPRKQ15262 1439 aa22.53■■□□□ 1.2
TMEM248-204ENST00000424964 NCOA1Q15788 1441 aa22.52■■□□□ 1.2
TMEM248-204ENST00000424964 DUOX2Q9NRD8 1548 aa22.52■■□□□ 1.19
TMEM248-204ENST00000424964 FER1L4A9Z1Z3 1794 aa22.51■■□□□ 1.19
TMEM248-204ENST00000424964 RIMS1Q86UR5 1692 aaKnown RBP22.51■■□□□ 1.19
TMEM248-204ENST00000424964 ADGRL2O95490 1459 aa22.5■■□□□ 1.19
TMEM248-204ENST00000424964 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
TMEM248-204ENST00000424964 PTPRMP28827 1452 aa22.47■■□□□ 1.19
TMEM248-204ENST00000424964 ROCK1Q13464 1354 aa22.45■■□□□ 1.18
TMEM248-204ENST00000424964 ERBINQ96RT1 1412 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms