RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 HDGFL2Q7Z4V5 671 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-204ENST00000423058 NAP1L5Q96NT1 182 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-204ENST00000423058 DCAF8L1A6NGE4 600 aa8.67□□□□□ -1.02
SCN1A-204ENST00000423058 IPO8O15397 1037 aaKnown RBP8.67□□□□□ -1.02
SCN1A-204ENST00000423058 PAK3O75914 559 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-204ENST00000423058 GOLGA3Q08378 1498 aa8.66□□□□□ -1.02
SCN1A-204ENST00000423058 SPAG9O60271 1321 aaKnown RBP8.66□□□□□ -1.02
SCN1A-204ENST00000423058 IRX6P78412 446 aaPredicted RBP8.66□□□□□ -1.02
SCN1A-204ENST00000423058 GOLGA6L1Q8N7Z2 621 aa8.65□□□□□ -1.02
SCN1A-204ENST00000423058 BAZ1BQ9UIG0 1483 aaKnown RBP8.65□□□□□ -1.02
SCN1A-204ENST00000423058 SYAP1Q96A49 352 aaPredicted RBP8.65□□□□□ -1.03
SCN1A-204ENST00000423058 KIF27Q86VH2 1401 aa8.65□□□□□ -1.03
SCN1A-204ENST00000423058 CSPP1Q1MSJ5 1256 aa8.65□□□□□ -1.03
SCN1A-204ENST00000423058 EIF4G1Q04637 1599 aaKnown RBP8.64□□□□□ -1.03
SCN1A-204ENST00000423058 MLECQ14165 292 aa8.64□□□□□ -1.03
SCN1A-204ENST00000423058 SOX12O15370 315 aa8.64□□□□□ -1.03
SCN1A-204ENST00000423058 ZNF330Q9Y3S2 320 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-204ENST00000423058 TCEAL9Q9UHQ7 104 aa8.63□□□□□ -1.03
SCN1A-204ENST00000423058 RASSF8Q8NHQ8 419 aa8.63□□□□□ -1.03
SCN1A-204ENST00000423058 CCNB3Q8WWL7 1395 aa8.63□□□□□ -1.03
SCN1A-204ENST00000423058 MORC1Q86VD1 984 aa8.63□□□□□ -1.03
SCN1A-204ENST00000423058 EID1Q9Y6B2 187 aa8.63□□□□□ -1.03
SCN1A-204ENST00000423058 VPS53Q5VIR6 699 aa8.62□□□□□ -1.03
SCN1A-204ENST00000423058 CHMP3Q9Y3E7 222 aa8.62□□□□□ -1.03
SCN1A-204ENST00000423058 FHAD1B1AJZ9 1412 aa8.62□□□□□ -1.03
SCN1A-204ENST00000423058 MARCH6O60337 910 aa8.62□□□□□ -1.03
SCN1A-204ENST00000423058 GTF2E1P29083 439 aaPredicted RBP8.62□□□□□ -1.03
SCN1A-204ENST00000423058 RGS3P49796 1198 aa8.62□□□□□ -1.03
SCN1A-204ENST00000423058 CC2D1BQ5T0F9 858 aaKnown RBP8.62□□□□□ -1.03
SCN1A-204ENST00000423058 CNKSR2Q8WXI2 1034 aa8.62□□□□□ -1.03
SCN1A-204ENST00000423058 ANO8Q9HCE9 1232 aaPredicted RBP8.62□□□□□ -1.03
SCN1A-204ENST00000423058 FRAT2O75474 233 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-204ENST00000423058 EIF3AQ14152 1382 aaKnown RBP8.61□□□□□ -1.03
SCN1A-204ENST00000423058 NACADO15069 1562 aa8.61□□□□□ -1.03
SCN1A-204ENST00000423058 TRIM34Q9BYJ4 488 aa8.61□□□□□ -1.03
SCN1A-204ENST00000423058 CHMP4CQ96CF2 233 aa8.61□□□□□ -1.03
SCN1A-204ENST00000423058 KIF3AQ9Y496 699 aa8.61□□□□□ -1.03
SCN1A-204ENST00000423058 CTDP1Q9Y5B0 961 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-204ENST00000423058 AMOTL1Q8IY63 956 aa8.6□□□□□ -1.03
SCN1A-204ENST00000423058 STK31Q9BXU1 1019 aa8.6□□□□□ -1.03
SCN1A-204ENST00000423058 HSP90B1P14625 803 aaKnown RBP8.6□□□□□ -1.03
SCN1A-204ENST00000423058 GBP4Q96PP9 640 aa8.6□□□□□ -1.03
SCN1A-204ENST00000423058 HIRIP3Q9BW71 556 aaPredicted RBP8.6□□□□□ -1.03
SCN1A-204ENST00000423058 TPM2P07951 284 aa8.59□□□□□ -1.03
SCN1A-204ENST00000423058 NOL10Q9BSC4 688 aaKnown RBP8.59□□□□□ -1.03
SCN1A-204ENST00000423058 TSR1Q2NL82 804 aaKnown RBP8.59□□□□□ -1.03
SCN1A-204ENST00000423058 AEBP2Q6ZN18 517 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-204ENST00000423058 KAT6BQ8WYB5 2073 aa8.58□□□□□ -1.04
SCN1A-204ENST00000423058 LRRFIP1Q32MZ4 808 aaKnown RBP8.58□□□□□ -1.04
SCN1A-204ENST00000423058 HMMRO75330 724 aa8.58□□□□□ -1.04
SCN1A-204ENST00000423058 TPM3P06753 285 aa8.58□□□□□ -1.04
SCN1A-204ENST00000423058 CWC22Q9HCG8 908 aaKnown RBP8.57□□□□□ -1.04
SCN1A-204ENST00000423058 CARMIL2Q6F5E8 1435 aa8.57□□□□□ -1.04
SCN1A-204ENST00000423058 PHF14O94880 888 aa8.57□□□□□ -1.04
SCN1A-204ENST00000423058 DCAF11Q8TEB1 546 aa8.57□□□□□ -1.04
SCN1A-204ENST00000423058 PPP4R2Q9NY27 417 aa8.57□□□□□ -1.04
SCN1A-204ENST00000423058 CEP164Q9UPV0 1460 aa8.56□□□□□ -1.04
SCN1A-204ENST00000423058 MEX3CQ5U5Q3 659 aaKnown RBP8.56□□□□□ -1.04
SCN1A-204ENST00000423058 LMOD3Q0VAK6 560 aa8.56□□□□□ -1.04
SCN1A-204ENST00000423058 STK26Q9P289 416 aa8.55□□□□□ -1.04
SCN1A-204ENST00000423058 EVA1CP58658 441 aa8.55□□□□□ -1.04
SCN1A-204ENST00000423058 SUPT16HQ9Y5B9 1047 aaKnown RBP8.55□□□□□ -1.04
SCN1A-204ENST00000423058 AKAP17AQ02040 695 aaKnown RBP8.55□□□□□ -1.04
SCN1A-204ENST00000423058 TPD52L1Q16890 204 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-204ENST00000423058 KTN1Q86UP2 1357 aaKnown RBP8.54□□□□□ -1.04
SCN1A-204ENST00000423058 CCDC70Q6NSX1 233 aa8.54□□□□□ -1.04
SCN1A-204ENST00000423058 TRIM6-TRIM34B2RNG4 842 aa8.54□□□□□ -1.04
SCN1A-204ENST00000423058 PDE4CQ08493 712 aa8.54□□□□□ -1.04
SCN1A-204ENST00000423058 TERF2IPQ9NYB0 399 aa8.54□□□□□ -1.04
SCN1A-204ENST00000423058 SAFB2Q14151 953 aaKnown RBP eCLIP8.54□□□□□ -1.04
SCN1A-204ENST00000423058 CREBRFQ8IUR6 639 aa8.54□□□□□ -1.04
SCN1A-204ENST00000423058 SETQ01105 290 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-204ENST00000423058 NOP58Q9Y2X3 529 aaKnown RBP8.53□□□□□ -1.04
SCN1A-204ENST00000423058 CEP162Q5TB80 1403 aa8.53□□□□□ -1.04
SCN1A-204ENST00000423058 TPM1P09493 284 aa8.53□□□□□ -1.04
SCN1A-204ENST00000423058 GGT6Q6P531 493 aa8.53□□□□□ -1.04
SCN1A-204ENST00000423058 WRNQ14191 1432 aaPredicted RBP eCLIP8.53□□□□□ -1.04
SCN1A-204ENST00000423058 RWDD1Q9H446 243 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-204ENST00000423058 FOXD1Q16676 465 aa8.53□□□□□ -1.04
SCN1A-204ENST00000423058 MSH5O43196 834 aa8.52□□□□□ -1.04
SCN1A-204ENST00000423058 WASHC2AQ641Q2 1341 aa8.52□□□□□ -1.04
SCN1A-204ENST00000423058 NGDNQ8NEJ9 315 aaKnown RBP8.52□□□□□ -1.04
SCN1A-204ENST00000423058 KIF16BQ96L93 1317 aa8.52□□□□□ -1.05
SCN1A-204ENST00000423058 PMFBP1Q8TBY8 1022 aa8.52□□□□□ -1.05
SCN1A-204ENST00000423058 APBB1O00213 710 aa8.52□□□□□ -1.05
SCN1A-204ENST00000423058 TNNT3P45378 269 aaPredicted RBP8.52□□□□□ -1.05
SCN1A-204ENST00000423058 AMPHP49418 695 aa8.52□□□□□ -1.05
SCN1A-204ENST00000423058 ITPRIPQ8IWB1 547 aa8.51□□□□□ -1.05
SCN1A-204ENST00000423058 TOMM22Q9NS69 142 aa8.51□□□□□ -1.05
SCN1A-204ENST00000423058 SF3A1Q15459 793 aaKnown RBP8.51□□□□□ -1.05
SCN1A-204ENST00000423058 SYNE3Q6ZMZ3 975 aa8.51□□□□□ -1.05
SCN1A-204ENST00000423058 MIER1Q8N108 512 aa8.51□□□□□ -1.05
SCN1A-204ENST00000423058 ROCK2O75116 1388 aaKnown RBP8.51□□□□□ -1.05
SCN1A-204ENST00000423058 PES1O00541 588 aaKnown RBP8.5□□□□□ -1.05
SCN1A-204ENST00000423058 ARHGAP35Q9NRY4 1499 aa8.5□□□□□ -1.05
SCN1A-204ENST00000423058 U2AF1L5P0DN76 240 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-204ENST00000423058 U2AF1Q01081 240 aaKnown RBP eCLIP8.5□□□□□ -1.05
SCN1A-204ENST00000423058 C1orf141Q5JVX7 400 aa8.5□□□□□ -1.05
SCN1A-204ENST00000423058 CCDC47Q96A33 483 aaKnown RBP8.5□□□□□ -1.05
SCN1A-204ENST00000423058 CCDC43Q96MW1 224 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms