RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ZFYVE16Q7Z3T8 1539 aa13.44□□□□□ -0.26
VIM-202ENST00000421459 HECW1Q76N89 1606 aa13.43□□□□□ -0.26
VIM-202ENST00000421459 ZMYM4Q5VZL5 1548 aa13.42□□□□□ -0.26
VIM-202ENST00000421459 CFAP74Q9C0B2 1584 aa13.41□□□□□ -0.26
VIM-202ENST00000421459 POGZQ7Z3K3 1410 aa13.41□□□□□ -0.26
VIM-202ENST00000421459 CEBPAP49715 358 aaPredicted RBP13.41□□□□□ -0.26
VIM-202ENST00000421459 EFCAB2Q5VUJ9 269 aa13.41□□□□□ -0.26
VIM-202ENST00000421459 AFAP1Q8N556 730 aa13.41□□□□□ -0.26
VIM-202ENST00000421459 FMN1Q68DA7 1419 aa13.39□□□□□ -0.27
VIM-202ENST00000421459 KIF14Q15058 1648 aa13.39□□□□□ -0.27
VIM-202ENST00000421459 MAGI2Q86UL8 1455 aa13.38□□□□□ -0.27
VIM-202ENST00000421459 CDK11AQ9UQ88 783 aaPredicted RBP13.38□□□□□ -0.27
VIM-202ENST00000421459 ATP10AO60312 1499 aa13.37□□□□□ -0.27
VIM-202ENST00000421459 MYT1LQ9UL68 1186 aa13.37□□□□□ -0.27
VIM-202ENST00000421459 TROQ12816 1431 aaPredicted RBP13.36□□□□□ -0.27
VIM-202ENST00000421459 ARHGAP5Q13017 1502 aa13.34□□□□□ -0.27
VIM-202ENST00000421459 C9orf84Q5VXU9 1444 aa13.34□□□□□ -0.27
VIM-202ENST00000421459 ARHGEF12Q9NZN5 1544 aa13.33□□□□□ -0.28
VIM-202ENST00000421459 LRRIQ1Q96JM4 1722 aa13.32□□□□□ -0.28
VIM-202ENST00000421459 MYO5CQ9NQX4 1742 aa13.31□□□□□ -0.28
VIM-202ENST00000421459 CLIP1P30622 1438 aa13.3□□□□□ -0.28
VIM-202ENST00000421459 TRAPPC8Q9Y2L5 1435 aa13.3□□□□□ -0.28
VIM-202ENST00000421459 ZNF518AQ6AHZ1 1483 aa13.3□□□□□ -0.28
VIM-202ENST00000421459 FER1L4A9Z1Z3 1794 aa13.3□□□□□ -0.28
VIM-202ENST00000421459 CERKQ8TCT0 537 aa13.3□□□□□ -0.28
VIM-202ENST00000421459 ZNF777Q9ULD5 760 aaPredicted RBP13.28□□□□□ -0.28
VIM-202ENST00000421459 KDM5CP41229 1560 aa13.28□□□□□ -0.28
VIM-202ENST00000421459 CASKIN1Q8WXD9 1431 aa13.27□□□□□ -0.29
VIM-202ENST00000421459 DIP2CQ9Y2E4 1556 aa13.27□□□□□ -0.29
VIM-202ENST00000421459 CDC42BPBQ9Y5S2 1711 aa13.26□□□□□ -0.29
VIM-202ENST00000421459 ABCA6Q8N139 1617 aa13.25□□□□□ -0.29
VIM-202ENST00000421459 MLH3Q9UHC1 1453 aa13.24□□□□□ -0.29
VIM-202ENST00000421459 HNRNPMP52272 730 aaKnown RBP eCLIP13.24□□□□□ -0.29
VIM-202ENST00000421459 ABCC1P33527 1531 aa13.23□□□□□ -0.29
VIM-202ENST00000421459 UHRF1BP1Q6BDS2 1440 aa13.22□□□□□ -0.29
VIM-202ENST00000421459 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
VIM-202ENST00000421459 PREX2Q70Z35 1606 aa13.21□□□□□ -0.29
VIM-202ENST00000421459 ESF1Q9H501 851 aaKnown RBP13.21□□□□□ -0.29
VIM-202ENST00000421459 PREX1Q8TCU6 1659 aa13.21□□□□□ -0.3
VIM-202ENST00000421459 STRCQ7RTU9 1775 aa13.19□□□□□ -0.3
VIM-202ENST00000421459 REREQ9P2R6 1566 aa13.19□□□□□ -0.3
VIM-202ENST00000421459 GPATCH8Q9UKJ3 1502 aaKnown RBP13.18□□□□□ -0.3
VIM-202ENST00000421459 ITSN2Q9NZM3 1697 aa13.18□□□□□ -0.3
VIM-202ENST00000421459 FYCO1Q9BQS8 1478 aa13.18□□□□□ -0.3
VIM-202ENST00000421459 KIDINS220Q9ULH0 1771 aa13.18□□□□□ -0.3
VIM-202ENST00000421459 AGLP35573 1532 aa13.18□□□□□ -0.3
VIM-202ENST00000421459 SPAG9O60271 1321 aaKnown RBP13.17□□□□□ -0.3
VIM-202ENST00000421459 CDC42BPAQ5VT25 1732 aa13.17□□□□□ -0.3
VIM-202ENST00000421459 SAMD9LQ8IVG5 1584 aa13.17□□□□□ -0.3
VIM-202ENST00000421459 DMRT2Q9Y5R5 561 aa13.17□□□□□ -0.3
VIM-202ENST00000421459 C3P01024 1663 aa13.17□□□□□ -0.3
VIM-202ENST00000421459 ZNF644Q9H582 1327 aaPredicted RBP13.16□□□□□ -0.3
VIM-202ENST00000421459 CFDP1Q9UEE9 299 aaPredicted RBP13.16□□□□□ -0.3
VIM-202ENST00000421459 SYCP2Q9BX26 1530 aa13.16□□□□□ -0.3
VIM-202ENST00000421459 ZMYM3Q14202 1370 aa13.14□□□□□ -0.31
VIM-202ENST00000421459 NCKAP5LQ9HCH0 1330 aa13.13□□□□□ -0.31
VIM-202ENST00000421459 CCNB3Q8WWL7 1395 aa13.13□□□□□ -0.31
VIM-202ENST00000421459 GGT6Q6P531 493 aa13.13□□□□□ -0.31
VIM-202ENST00000421459 PTPRTO14522 1441 aa13.12□□□□□ -0.31
VIM-202ENST00000421459 MTUS2Q5JR59 1369 aa13.11□□□□□ -0.31
VIM-202ENST00000421459 CNTLNQ9NXG0 1405 aa13.11□□□□□ -0.31
VIM-202ENST00000421459 ILDR2Q71H61 639 aa13.1□□□□□ -0.31
VIM-202ENST00000421459 NCOA1Q15788 1441 aa13.1□□□□□ -0.31
VIM-202ENST00000421459 KIAA1107Q9UPP5 1409 aa13.1□□□□□ -0.31
VIM-202ENST00000421459 SUPT6HQ7KZ85 1726 aaKnown RBP13.1□□□□□ -0.31
VIM-202ENST00000421459 A2MP01023 1474 aa13.1□□□□□ -0.31
VIM-202ENST00000421459 ATP7AQ04656 1500 aa13.09□□□□□ -0.31
VIM-202ENST00000421459 CAMSAP1Q5T5Y3 1602 aa13.08□□□□□ -0.32
VIM-202ENST00000421459 LTBP4Q8N2S1 1624 aa13.08□□□□□ -0.32
VIM-202ENST00000421459 DISP3Q9P2K9 1392 aa13.07□□□□□ -0.32
VIM-202ENST00000421459 SETD1BQ9UPS6 1966 aaKnown RBP13.07□□□□□ -0.32
VIM-202ENST00000421459 NPATQ14207 1427 aa13.07□□□□□ -0.32
VIM-202ENST00000421459 ZNF335Q9H4Z2 1342 aaPredicted RBP13.07□□□□□ -0.32
VIM-202ENST00000421459 PLEKHH2Q8IVE3 1493 aa13.06□□□□□ -0.32
VIM-202ENST00000421459 INO80Q9ULG1 1556 aaPredicted RBP13.06□□□□□ -0.32
VIM-202ENST00000421459 CLTCQ00610 1675 aaKnown RBP13.05□□□□□ -0.32
VIM-202ENST00000421459 PTPRKQ15262 1439 aa13.05□□□□□ -0.32
VIM-202ENST00000421459 MBD5Q9P267 1494 aa13.05□□□□□ -0.32
VIM-202ENST00000421459 PLXNC1O60486 1568 aa13.05□□□□□ -0.32
VIM-202ENST00000421459 TIAM1Q13009 1591 aa13.05□□□□□ -0.32
VIM-202ENST00000421459 FBXO31Q5XUX0 539 aaPredicted RBP13.04□□□□□ -0.32
VIM-202ENST00000421459 MROH2AA6NES4 1674 aa13.02□□□□□ -0.32
VIM-202ENST00000421459 KIF3BO15066 747 aa13.02□□□□□ -0.33
VIM-202ENST00000421459 DHX29Q7Z478 1369 aaKnown RBP13.02□□□□□ -0.33
VIM-202ENST00000421459 CEP162Q5TB80 1403 aa13.02□□□□□ -0.33
VIM-202ENST00000421459 EHBP1L1Q8N3D4 1523 aa13□□□□□ -0.33
VIM-202ENST00000421459 LOC105371045A0A1W2PR82 267 aa13□□□□□ -0.33
VIM-202ENST00000421459 MYO3AQ8NEV4 1616 aa12.99□□□□□ -0.33
VIM-202ENST00000421459 CEP170BQ9Y4F5 1589 aaPredicted RBP12.99□□□□□ -0.33
VIM-202ENST00000421459 UBAP1LF5GYI3 381 aa12.99□□□□□ -0.33
VIM-202ENST00000421459 PKD2Q13563 968 aa12.99□□□□□ -0.33
VIM-202ENST00000421459 PPP6R1Q9UPN7 881 aa12.99□□□□□ -0.33
VIM-202ENST00000421459 NCOA2Q15596 1464 aa12.98□□□□□ -0.33
VIM-202ENST00000421459 RTEL1-TNFRSF6BF6WH68 1400 aa12.98□□□□□ -0.33
VIM-202ENST00000421459 TCOF1Q13428 1488 aaKnown RBP12.97□□□□□ -0.33
VIM-202ENST00000421459 PLA2R1Q13018 1463 aa12.97□□□□□ -0.33
VIM-202ENST00000421459 WASHC2CQ9Y4E1 1318 aa12.96□□□□□ -0.33
VIM-202ENST00000421459 CAMSAP2Q08AD1 1489 aa12.96□□□□□ -0.34
VIM-202ENST00000421459 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.34
VIM-202ENST00000421459 TNRQ92752 1358 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms