RNA–Protein interactions for RNA: ENST00000416728.3

PAF1-202, Transcript of PAF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene PAF1, Length 1,383 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAF1-202ENST00000416728 MADDQ8WXG6 1647 aa23.65■■□□□ 1.38
PAF1-202ENST00000416728 TROQ12816 1431 aaPredicted RBP23.65■■□□□ 1.38
PAF1-202ENST00000416728 CLIP1P30622 1438 aa23.63■■□□□ 1.37
PAF1-202ENST00000416728 KIF14Q15058 1648 aa23.62■■□□□ 1.37
PAF1-202ENST00000416728 MYO5CQ9NQX4 1742 aa23.59■■□□□ 1.37
PAF1-202ENST00000416728 ARHGAP5Q13017 1502 aa23.56■■□□□ 1.36
PAF1-202ENST00000416728 CASKIN1Q8WXD9 1431 aa23.55■■□□□ 1.36
PAF1-202ENST00000416728 RIMS1Q86UR5 1692 aaKnown RBP23.55■■□□□ 1.36
PAF1-202ENST00000416728 CCDC18Q5T9S5 1454 aa23.54■■□□□ 1.36
PAF1-202ENST00000416728 MLECQ14165 292 aa23.53■■□□□ 1.36
PAF1-202ENST00000416728 PCF11O94913 1555 aaKnown RBP23.53■■□□□ 1.36
PAF1-202ENST00000416728 ATP10AO60312 1499 aa23.53■■□□□ 1.36
PAF1-202ENST00000416728 ZNF518AQ6AHZ1 1483 aa23.53■■□□□ 1.36
PAF1-202ENST00000416728 LRRIQ1Q96JM4 1722 aa23.52■■□□□ 1.35
PAF1-202ENST00000416728 SIGLEC1Q9BZZ2 1709 aa23.52■■□□□ 1.35
PAF1-202ENST00000416728 C9orf84Q5VXU9 1444 aa23.51■■□□□ 1.35
PAF1-202ENST00000416728 LMTK3Q96Q04 1460 aa23.51■■□□□ 1.35
PAF1-202ENST00000416728 PLPPR3Q6T4P5 718 aa23.51■■□□□ 1.35
PAF1-202ENST00000416728 AFAP1Q8N556 730 aa23.49■■□□□ 1.35
PAF1-202ENST00000416728 MYT1LQ9UL68 1186 aa23.47■■□□□ 1.35
PAF1-202ENST00000416728 FYCO1Q9BQS8 1478 aa23.46■■□□□ 1.35
PAF1-202ENST00000416728 KDM5CP41229 1560 aa23.46■■□□□ 1.35
PAF1-202ENST00000416728 ARHGEF12Q9NZN5 1544 aa23.42■■□□□ 1.34
PAF1-202ENST00000416728 PREX2Q70Z35 1606 aa23.42■■□□□ 1.34
PAF1-202ENST00000416728 FER1L4A9Z1Z3 1794 aa23.41■■□□□ 1.34
PAF1-202ENST00000416728 CDC42BPBQ9Y5S2 1711 aa23.41■■□□□ 1.34
PAF1-202ENST00000416728 HSPA2P54652 639 aa23.4■■□□□ 1.34
PAF1-202ENST00000416728 ABCC1P33527 1531 aa23.39■■□□□ 1.33
PAF1-202ENST00000416728 MLH3Q9UHC1 1453 aa23.39■■□□□ 1.33
PAF1-202ENST00000416728 TRAPPC8Q9Y2L5 1435 aa23.38■■□□□ 1.33
PAF1-202ENST00000416728 DIP2CQ9Y2E4 1556 aa23.37■■□□□ 1.33
PAF1-202ENST00000416728 FBXO41Q8TF61 875 aa23.34■■□□□ 1.33
PAF1-202ENST00000416728 REREQ9P2R6 1566 aa23.34■■□□□ 1.33
PAF1-202ENST00000416728 ZNF777Q9ULD5 760 aaPredicted RBP23.33■■□□□ 1.33
PAF1-202ENST00000416728 CEBPAP49715 358 aaPredicted RBP23.32■■□□□ 1.32
PAF1-202ENST00000416728 ABCA6Q8N139 1617 aa23.32■■□□□ 1.32
PAF1-202ENST00000416728 ITSN2Q9NZM3 1697 aa23.31■■□□□ 1.32
PAF1-202ENST00000416728 CDC42BPAQ5VT25 1732 aa23.31■■□□□ 1.32
PAF1-202ENST00000416728 GPATCH8Q9UKJ3 1502 aaKnown RBP23.3■■□□□ 1.32
PAF1-202ENST00000416728 AGLP35573 1532 aa23.28■■□□□ 1.32
PAF1-202ENST00000416728 MTUS2Q5JR59 1369 aa23.27■■□□□ 1.32
PAF1-202ENST00000416728 ESF1Q9H501 851 aaKnown RBP23.27■■□□□ 1.31
PAF1-202ENST00000416728 CFDP1Q9UEE9 299 aaPredicted RBP23.26■■□□□ 1.31
PAF1-202ENST00000416728 SAMD9LQ8IVG5 1584 aa23.26■■□□□ 1.31
PAF1-202ENST00000416728 SYCP2Q9BX26 1530 aa23.25■■□□□ 1.31
PAF1-202ENST00000416728 CCNB3Q8WWL7 1395 aa23.25■■□□□ 1.31
PAF1-202ENST00000416728 SPAG9O60271 1321 aaKnown RBP23.24■■□□□ 1.31
PAF1-202ENST00000416728 KIDINS220Q9ULH0 1771 aa23.23■■□□□ 1.31
PAF1-202ENST00000416728 PREX1Q8TCU6 1659 aa23.23■■□□□ 1.31
PAF1-202ENST00000416728 HNRNPMP52272 730 aaKnown RBP eCLIP23.23■■□□□ 1.31
PAF1-202ENST00000416728 UHRF1BP1Q6BDS2 1440 aa23.22■■□□□ 1.31
PAF1-202ENST00000416728 KIAA1107Q9UPP5 1409 aa23.21■■□□□ 1.31
PAF1-202ENST00000416728 PLEKHH2Q8IVE3 1493 aa23.21■■□□□ 1.31
PAF1-202ENST00000416728 CEP162Q5TB80 1403 aa23.19■■□□□ 1.3
PAF1-202ENST00000416728 CNTLNQ9NXG0 1405 aa23.18■■□□□ 1.3
PAF1-202ENST00000416728 ATP7AQ04656 1500 aa23.15■■□□□ 1.3
PAF1-202ENST00000416728 EHBP1L1Q8N3D4 1523 aa23.15■■□□□ 1.3
PAF1-202ENST00000416728 C3P01024 1663 aa23.14■■□□□ 1.29
PAF1-202ENST00000416728 DMRT2Q9Y5R5 561 aa23.13■■□□□ 1.29
PAF1-202ENST00000416728 CERKQ8TCT0 537 aa23.12■■□□□ 1.29
PAF1-202ENST00000416728 TIAM1Q13009 1591 aa23.11■■□□□ 1.29
PAF1-202ENST00000416728 SETD1BQ9UPS6 1966 aaKnown RBP23.11■■□□□ 1.29
PAF1-202ENST00000416728 INO80Q9ULG1 1556 aaPredicted RBP23.11■■□□□ 1.29
PAF1-202ENST00000416728 ZNF644Q9H582 1327 aaPredicted RBP23.1■■□□□ 1.29
PAF1-202ENST00000416728 A2MP01023 1474 aa23.1■■□□□ 1.29
PAF1-202ENST00000416728 PLXNC1O60486 1568 aa23.07■■□□□ 1.28
PAF1-202ENST00000416728 ZMYM3Q14202 1370 aa23.06■■□□□ 1.28
PAF1-202ENST00000416728 SUPT6HQ7KZ85 1726 aaKnown RBP23.06■■□□□ 1.28
PAF1-202ENST00000416728 MBD5Q9P267 1494 aa23.05■■□□□ 1.28
PAF1-202ENST00000416728 NPATQ14207 1427 aa23.05■■□□□ 1.28
PAF1-202ENST00000416728 STRCQ7RTU9 1775 aa23.04■■□□□ 1.28
PAF1-202ENST00000416728 GGT6Q6P531 493 aa23.03■■□□□ 1.28
PAF1-202ENST00000416728 MROH2AA6NES4 1674 aa23.03■■□□□ 1.28
PAF1-202ENST00000416728 NCOA2Q15596 1464 aa23.01■■□□□ 1.27
PAF1-202ENST00000416728 RTEL1-TNFRSF6BF6WH68 1400 aa23.01■■□□□ 1.27
PAF1-202ENST00000416728 PTPRTO14522 1441 aa23.01■■□□□ 1.27
PAF1-202ENST00000416728 PPP6R1Q9UPN7 881 aa22.99■■□□□ 1.27
PAF1-202ENST00000416728 ADGBQ8N7X0 1667 aa22.98■■□□□ 1.27
PAF1-202ENST00000416728 NCOA1Q15788 1441 aa22.97■■□□□ 1.27
PAF1-202ENST00000416728 CLTCQ00610 1675 aaKnown RBP22.97■■□□□ 1.27
PAF1-202ENST00000416728 CCDC141Q6ZP82 1450 aa22.96■■□□□ 1.27
PAF1-202ENST00000416728 CAMSAP2Q08AD1 1489 aa22.96■■□□□ 1.27
PAF1-202ENST00000416728 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
PAF1-202ENST00000416728 RSPH4AQ5TD94 716 aa22.95■■□□□ 1.26
PAF1-202ENST00000416728 DHX29Q7Z478 1369 aaKnown RBP22.95■■□□□ 1.26
PAF1-202ENST00000416728 VPS8Q8N3P4 1428 aa22.95■■□□□ 1.26
PAF1-202ENST00000416728 PTPRKQ15262 1439 aa22.94■■□□□ 1.26
PAF1-202ENST00000416728 CAMSAP1Q5T5Y3 1602 aa22.92■■□□□ 1.26
PAF1-202ENST00000416728 KIF3BO15066 747 aa22.89■■□□□ 1.26
PAF1-202ENST00000416728 LRRC9Q6ZRR7 1453 aa22.89■■□□□ 1.26
PAF1-202ENST00000416728 MYO3AQ8NEV4 1616 aa22.88■■□□□ 1.25
PAF1-202ENST00000416728 TSPY4P0CV99 314 aa22.87■■□□□ 1.25
PAF1-202ENST00000416728 TSPY10P0CW01 314 aa22.87■■□□□ 1.25
PAF1-202ENST00000416728 CEP170BQ9Y4F5 1589 aaPredicted RBP22.86■■□□□ 1.25
PAF1-202ENST00000416728 NCKAP5LQ9HCH0 1330 aa22.86■■□□□ 1.25
PAF1-202ENST00000416728 ARHGEF5Q12774 1597 aa22.85■■□□□ 1.25
PAF1-202ENST00000416728 ZNF142P52746 1687 aaPredicted RBP22.85■■□□□ 1.25
PAF1-202ENST00000416728 PLA2R1Q13018 1463 aa22.84■■□□□ 1.25
PAF1-202ENST00000416728 PKD2Q13563 968 aa22.84■■□□□ 1.25
PAF1-202ENST00000416728 LTBP4Q8N2S1 1624 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms