RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 MSH5O43196 834 aa29.1■■■□□ 2.25
AP1S3-205ENST00000415298 PLEKHD1A6NEE1 506 aa29.09■■■□□ 2.25
AP1S3-205ENST00000415298 CDK11AQ9UQ88 783 aaPredicted RBP29.09■■■□□ 2.25
AP1S3-205ENST00000415298 ZCCHC11Q5TAX3 1644 aaKnown RBP29.08■■■□□ 2.25
AP1S3-205ENST00000415298 DNAJC5Q9H3Z4 198 aa29.03■■■□□ 2.24
AP1S3-205ENST00000415298 EHBP1L1Q8N3D4 1523 aa29.01■■■□□ 2.23
AP1S3-205ENST00000415298 NPM1P06748 294 aaKnown RBP eCLIP29.01■■■□□ 2.23
AP1S3-205ENST00000415298 KCNH8Q96L42 1107 aa29.01■■■□□ 2.23
AP1S3-205ENST00000415298 TROQ12816 1431 aaPredicted RBP29■■■□□ 2.23
AP1S3-205ENST00000415298 PHLDB1Q86UU1 1377 aa29■■■□□ 2.23
AP1S3-205ENST00000415298 NCOA2Q15596 1464 aa28.97■■■□□ 2.23
AP1S3-205ENST00000415298 KIF14Q15058 1648 aa28.95■■■□□ 2.22
AP1S3-205ENST00000415298 SUPT6HQ7KZ85 1726 aaKnown RBP28.93■■■□□ 2.22
AP1S3-205ENST00000415298 ASXL2Q76L83 1435 aa28.91■■■□□ 2.22
AP1S3-205ENST00000415298 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.87■■■□□ 2.21
AP1S3-205ENST00000415298 WDR7Q9Y4E6 1490 aa28.85■■■□□ 2.21
AP1S3-205ENST00000415298 FANCIQ9NVI1 1328 aa28.83■■■□□ 2.21
AP1S3-205ENST00000415298 CCNB3Q8WWL7 1395 aa28.8■■■□□ 2.2
AP1S3-205ENST00000415298 ABCC10Q5T3U5 1492 aa28.8■■■□□ 2.2
AP1S3-205ENST00000415298 MYOM3Q5VTT5 1437 aa28.79■■■□□ 2.2
AP1S3-205ENST00000415298 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.78■■■□□ 2.2
AP1S3-205ENST00000415298 FAM50AQ14320 339 aaKnown RBP28.76■■■□□ 2.19
AP1S3-205ENST00000415298 GPATCH8Q9UKJ3 1502 aaKnown RBP28.76■■■□□ 2.19
AP1S3-205ENST00000415298 RRBP1Q9P2E9 1410 aaKnown RBP28.76■■■□□ 2.19
AP1S3-205ENST00000415298 TTC37Q6PGP7 1564 aa28.75■■■□□ 2.19
AP1S3-205ENST00000415298 FGD6Q6ZV73 1430 aa28.75■■■□□ 2.19
AP1S3-205ENST00000415298 ZNF644Q9H582 1327 aaPredicted RBP28.74■■■□□ 2.19
AP1S3-205ENST00000415298 CFDP1Q9UEE9 299 aaPredicted RBP28.72■■■□□ 2.19
AP1S3-205ENST00000415298 ZNF777Q9ULD5 760 aaPredicted RBP28.72■■■□□ 2.19
AP1S3-205ENST00000415298 MAPKBP1O60336 1514 aa28.72■■■□□ 2.19
AP1S3-205ENST00000415298 ITGAEP38570 1179 aa28.71■■■□□ 2.19
AP1S3-205ENST00000415298 CDC42BPAQ5VT25 1732 aa28.7■■■□□ 2.18
AP1S3-205ENST00000415298 PTPN23Q9H3S7 1636 aa28.63■■■□□ 2.17
AP1S3-205ENST00000415298 CDC42BPBQ9Y5S2 1711 aa28.63■■■□□ 2.17
AP1S3-205ENST00000415298 MIA2Q96PC5 1412 aa28.62■■■□□ 2.17
AP1S3-205ENST00000415298 FAM69CQ0P6D2 419 aa28.61■■■□□ 2.17
AP1S3-205ENST00000415298 ABCA9Q8IUA7 1624 aa28.6■■■□□ 2.17
AP1S3-205ENST00000415298 ITSN2Q9NZM3 1697 aa28.6■■■□□ 2.17
AP1S3-205ENST00000415298 PLCH2O75038 1416 aa28.59■■■□□ 2.17
AP1S3-205ENST00000415298 MYO5CQ9NQX4 1742 aa28.58■■■□□ 2.17
AP1S3-205ENST00000415298 PREX2Q70Z35 1606 aa28.57■■■□□ 2.16
AP1S3-205ENST00000415298 ARHGAP5Q13017 1502 aa28.56■■■□□ 2.16
AP1S3-205ENST00000415298 IL27Q8NEV9 243 aa28.56■■■□□ 2.16
AP1S3-205ENST00000415298 BCANQ96GW7 911 aa28.55■■■□□ 2.16
AP1S3-205ENST00000415298 CD109Q6YHK3 1445 aa28.54■■■□□ 2.16
AP1S3-205ENST00000415298 TCOF1Q13428 1488 aaKnown RBP28.54■■■□□ 2.16
AP1S3-205ENST00000415298 CAMSAP2Q08AD1 1489 aa28.53■■■□□ 2.16
AP1S3-205ENST00000415298 DIP2BQ9P265 1576 aa28.52■■■□□ 2.16
AP1S3-205ENST00000415298 HNRNPMP52272 730 aaKnown RBP eCLIP28.52■■■□□ 2.16
AP1S3-205ENST00000415298 EFCAB2Q5VUJ9 269 aa28.5■■■□□ 2.15
AP1S3-205ENST00000415298 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.5■■■□□ 2.15
AP1S3-205ENST00000415298 PTPRKQ15262 1439 aa28.5■■■□□ 2.15
AP1S3-205ENST00000415298 SAMD9LQ8IVG5 1584 aa28.49■■■□□ 2.15
AP1S3-205ENST00000415298 CHIC2Q9UKJ5 165 aa28.47■■■□□ 2.15
AP1S3-205ENST00000415298 FANCAO15360 1455 aa28.45■■■□□ 2.14
AP1S3-205ENST00000415298 RTN4Q9NQC3 1192 aaKnown RBP28.44■■■□□ 2.14
AP1S3-205ENST00000415298 GLI2P10070 1586 aa28.44■■■□□ 2.14
AP1S3-205ENST00000415298 KIF13AQ9H1H9 1805 aa28.43■■■□□ 2.14
AP1S3-205ENST00000415298 MAP3K4Q9Y6R4 1608 aa28.42■■■□□ 2.14
AP1S3-205ENST00000415298 NEFLP07196 543 aa28.42■■■□□ 2.14
AP1S3-205ENST00000415298 ABCC5O15440 1437 aa28.41■■■□□ 2.14
AP1S3-205ENST00000415298 ARHGEF12Q9NZN5 1544 aa28.41■■■□□ 2.14
AP1S3-205ENST00000415298 TSPOAP1O95153 1857 aa28.41■■■□□ 2.14
AP1S3-205ENST00000415298 FKBP8Q14318 412 aa28.39■■■□□ 2.14
AP1S3-205ENST00000415298 MBD5Q9P267 1494 aa28.39■■■□□ 2.14
AP1S3-205ENST00000415298 SYCP2Q9BX26 1530 aa28.39■■■□□ 2.14
AP1S3-205ENST00000415298 DAPK1P53355 1430 aa28.39■■■□□ 2.14
AP1S3-205ENST00000415298 TRHP20396 242 aaPredicted RBP28.39■■■□□ 2.14
AP1S3-205ENST00000415298 ARAP3Q8WWN8 1544 aa28.39■■■□□ 2.13
AP1S3-205ENST00000415298 DNMT1P26358 1616 aaKnown RBP28.35■■■□□ 2.13
AP1S3-205ENST00000415298 AKNAQ7Z591 1439 aa28.35■■■□□ 2.13
AP1S3-205ENST00000415298 AFAP1Q8N556 730 aa28.34■■■□□ 2.13
AP1S3-205ENST00000415298 RRP7BPQ9NSQ0 103 aa28.33■■■□□ 2.13
AP1S3-205ENST00000415298 TRAPPC8Q9Y2L5 1435 aa28.32■■■□□ 2.12
AP1S3-205ENST00000415298 GLIPR1L2Q4G1C9 344 aa28.32■■■□□ 2.12
AP1S3-205ENST00000415298 ABCC1P33527 1531 aa28.32■■■□□ 2.12
AP1S3-205ENST00000415298 SCAPERQ9BY12 1400 aa28.32■■■□□ 2.12
AP1S3-205ENST00000415298 ADGRL1O94910 1474 aa28.31■■■□□ 2.12
AP1S3-205ENST00000415298 KIAA1107Q9UPP5 1409 aa28.31■■■□□ 2.12
AP1S3-205ENST00000415298 PPRC1Q5VV67 1664 aaKnown RBP28.29■■■□□ 2.12
AP1S3-205ENST00000415298 TSPY4P0CV99 314 aa28.28■■■□□ 2.12
AP1S3-205ENST00000415298 TSPY10P0CW01 314 aa28.28■■■□□ 2.12
AP1S3-205ENST00000415298 PLEKHH2Q8IVE3 1493 aa28.28■■■□□ 2.12
AP1S3-205ENST00000415298 CCDC141Q6ZP82 1450 aa28.26■■■□□ 2.11
AP1S3-205ENST00000415298 ARHGEF5Q12774 1597 aa28.25■■■□□ 2.11
AP1S3-205ENST00000415298 RAPGEF3O95398 923 aa28.25■■■□□ 2.11
AP1S3-205ENST00000415298 RSPH4AQ5TD94 716 aa28.25■■■□□ 2.11
AP1S3-205ENST00000415298 ZMYND15Q9H091 742 aa28.24■■■□□ 2.11
AP1S3-205ENST00000415298 NEO1Q92859 1461 aa28.23■■■□□ 2.11
AP1S3-205ENST00000415298 C9orf84Q5VXU9 1444 aa28.22■■■□□ 2.11
AP1S3-205ENST00000415298 CROCC2H7BZ55 1655 aa28.22■■■□□ 2.11
AP1S3-205ENST00000415298 CFAP74Q9C0B2 1584 aa28.19■■■□□ 2.1
AP1S3-205ENST00000415298 NAIPQ13075 1403 aa28.18■■■□□ 2.1
AP1S3-205ENST00000415298 NCOA1Q15788 1441 aa28.18■■■□□ 2.1
AP1S3-205ENST00000415298 SETD5Q9C0A6 1442 aa28.17■■■□□ 2.1
AP1S3-205ENST00000415298 RAB3GAP2Q9H2M9 1393 aa28.17■■■□□ 2.1
AP1S3-205ENST00000415298 NBR1Q14596 966 aa28.17■■■□□ 2.1
AP1S3-205ENST00000415298 HFM1A2PYH4 1435 aa28.16■■■□□ 2.1
AP1S3-205ENST00000415298 TEX14Q8IWB6 1497 aa28.15■■■□□ 2.1
AP1S3-205ENST00000415298 SPAG9O60271 1321 aaKnown RBP28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms