RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PCF11O94913 1555 aaKnown RBP22.34■■□□□ 1.17
USP4-203ENST00000415188 ARHGEF40Q8TER5 1519 aa22.32■■□□□ 1.16
USP4-203ENST00000415188 CASKIN1Q8WXD9 1431 aa22.32■■□□□ 1.16
USP4-203ENST00000415188 ARID4BQ4LE39 1312 aaPredicted RBP22.31■■□□□ 1.16
USP4-203ENST00000415188 SCAPERQ9BY12 1400 aa22.3■■□□□ 1.16
USP4-203ENST00000415188 HECW2Q9P2P5 1572 aa22.29■■□□□ 1.16
USP4-203ENST00000415188 ADAMTSL3P82987 1691 aa22.29■■□□□ 1.16
USP4-203ENST00000415188 MYO5CQ9NQX4 1742 aa22.29■■□□□ 1.16
USP4-203ENST00000415188 ZMYM4Q5VZL5 1548 aa22.28■■□□□ 1.16
USP4-203ENST00000415188 YEATS2Q9ULM3 1422 aa22.27■■□□□ 1.16
USP4-203ENST00000415188 EFCAB2Q5VUJ9 269 aa22.27■■□□□ 1.16
USP4-203ENST00000415188 POGZQ7Z3K3 1410 aa22.27■■□□□ 1.16
USP4-203ENST00000415188 BCORL1Q5H9F3 1711 aa22.26■■□□□ 1.15
USP4-203ENST00000415188 ZFYVE16Q7Z3T8 1539 aa22.25■■□□□ 1.15
USP4-203ENST00000415188 CCDC18Q5T9S5 1454 aa22.25■■□□□ 1.15
USP4-203ENST00000415188 PTPRMP28827 1452 aa22.24■■□□□ 1.15
USP4-203ENST00000415188 ARHGAP5Q13017 1502 aa22.23■■□□□ 1.15
USP4-203ENST00000415188 FYCO1Q9BQS8 1478 aa22.22■■□□□ 1.15
USP4-203ENST00000415188 MADDQ8WXG6 1647 aa22.22■■□□□ 1.15
USP4-203ENST00000415188 MAGI2Q86UL8 1455 aa22.21■■□□□ 1.15
USP4-203ENST00000415188 SIGLEC1Q9BZZ2 1709 aa22.2■■□□□ 1.14
USP4-203ENST00000415188 MAP3K1Q13233 1512 aa22.17■■□□□ 1.14
USP4-203ENST00000415188 CDC42BPBQ9Y5S2 1711 aa22.16■■□□□ 1.14
USP4-203ENST00000415188 AFAP1Q8N556 730 aa22.15■■□□□ 1.14
USP4-203ENST00000415188 MLECQ14165 292 aa22.14■■□□□ 1.13
USP4-203ENST00000415188 PREX2Q70Z35 1606 aa22.14■■□□□ 1.13
USP4-203ENST00000415188 RIMS1Q86UR5 1692 aaKnown RBP22.13■■□□□ 1.13
USP4-203ENST00000415188 ZNF518AQ6AHZ1 1483 aa22.13■■□□□ 1.13
USP4-203ENST00000415188 ATP10AO60312 1499 aa22.12■■□□□ 1.13
USP4-203ENST00000415188 KDM5CP41229 1560 aa22.11■■□□□ 1.13
USP4-203ENST00000415188 ARHGEF12Q9NZN5 1544 aa22.1■■□□□ 1.13
USP4-203ENST00000415188 C9orf84Q5VXU9 1444 aa22.1■■□□□ 1.13
USP4-203ENST00000415188 CDC42BPAQ5VT25 1732 aa22.09■■□□□ 1.13
USP4-203ENST00000415188 ABCC1P33527 1531 aa22.09■■□□□ 1.13
USP4-203ENST00000415188 PLPPR3Q6T4P5 718 aa22.09■■□□□ 1.13
USP4-203ENST00000415188 RRBP1Q9P2E9 1410 aaKnown RBP22.08■■□□□ 1.13
USP4-203ENST00000415188 TRAPPC8Q9Y2L5 1435 aa22.08■■□□□ 1.13
USP4-203ENST00000415188 MYT1LQ9UL68 1186 aa22.08■■□□□ 1.12
USP4-203ENST00000415188 TIAM1Q13009 1591 aa22.04■■□□□ 1.12
USP4-203ENST00000415188 ITSN2Q9NZM3 1697 aa22.04■■□□□ 1.12
USP4-203ENST00000415188 GPATCH8Q9UKJ3 1502 aaKnown RBP22.04■■□□□ 1.12
USP4-203ENST00000415188 ZNF777Q9ULD5 760 aaPredicted RBP22.04■■□□□ 1.12
USP4-203ENST00000415188 DIP2CQ9Y2E4 1556 aa22.04■■□□□ 1.12
USP4-203ENST00000415188 MLH3Q9UHC1 1453 aa22.02■■□□□ 1.12
USP4-203ENST00000415188 MTUS2Q5JR59 1369 aa22.02■■□□□ 1.12
USP4-203ENST00000415188 FER1L4A9Z1Z3 1794 aa22.02■■□□□ 1.12
USP4-203ENST00000415188 ABCA6Q8N139 1617 aa22.01■■□□□ 1.11
USP4-203ENST00000415188 SAMD9LQ8IVG5 1584 aa22.01■■□□□ 1.11
USP4-203ENST00000415188 LMTK3Q96Q04 1460 aa22.01■■□□□ 1.11
USP4-203ENST00000415188 CCNB3Q8WWL7 1395 aa21.98■■□□□ 1.11
USP4-203ENST00000415188 SYCP2Q9BX26 1530 aa21.98■■□□□ 1.11
USP4-203ENST00000415188 CLSPNQ9HAW4 1339 aa21.98■■□□□ 1.11
USP4-203ENST00000415188 KANK4Q5T7N3 995 aaPredicted RBP21.97■■□□□ 1.11
USP4-203ENST00000415188 HNRNPMP52272 730 aaKnown RBP eCLIP21.96■■□□□ 1.11
USP4-203ENST00000415188 CFDP1Q9UEE9 299 aaPredicted RBP21.96■■□□□ 1.11
USP4-203ENST00000415188 ILDR1Q86SU0 546 aaPredicted RBP21.96■■□□□ 1.11
USP4-203ENST00000415188 REREQ9P2R6 1566 aa21.95■■□□□ 1.1
USP4-203ENST00000415188 KIDINS220Q9ULH0 1771 aa21.95■■□□□ 1.1
USP4-203ENST00000415188 EHBP1L1Q8N3D4 1523 aa21.93■■□□□ 1.1
USP4-203ENST00000415188 CEBPAP49715 358 aaPredicted RBP21.93■■□□□ 1.1
USP4-203ENST00000415188 HSPA2P54652 639 aa21.93■■□□□ 1.1
USP4-203ENST00000415188 KIAA1107Q9UPP5 1409 aa21.9■■□□□ 1.1
USP4-203ENST00000415188 SPAG9O60271 1321 aaKnown RBP21.9■■□□□ 1.1
USP4-203ENST00000415188 LRRC9Q6ZRR7 1453 aa21.9■■□□□ 1.1
USP4-203ENST00000415188 AGLP35573 1532 aa21.9■■□□□ 1.1
USP4-203ENST00000415188 ZNF644Q9H582 1327 aaPredicted RBP21.89■■□□□ 1.1
USP4-203ENST00000415188 PLEKHH2Q8IVE3 1493 aa21.89■■□□□ 1.09
USP4-203ENST00000415188 ATP7AQ04656 1500 aa21.84■■□□□ 1.09
USP4-203ENST00000415188 INO80Q9ULG1 1556 aaPredicted RBP21.83■■□□□ 1.09
USP4-203ENST00000415188 NCOA2Q15596 1464 aa21.83■■□□□ 1.08
USP4-203ENST00000415188 ESF1Q9H501 851 aaKnown RBP21.81■■□□□ 1.08
USP4-203ENST00000415188 MBD5Q9P267 1494 aa21.8■■□□□ 1.08
USP4-203ENST00000415188 DHX57Q6P158 1386 aaKnown RBP21.8■■□□□ 1.08
USP4-203ENST00000415188 ZNF316A6NFI3 1004 aaPredicted RBP21.8■■□□□ 1.08
USP4-203ENST00000415188 PREX1Q8TCU6 1659 aa21.79■■□□□ 1.08
USP4-203ENST00000415188 SUPT6HQ7KZ85 1726 aaKnown RBP21.79■■□□□ 1.08
USP4-203ENST00000415188 C3P01024 1663 aa21.79■■□□□ 1.08
USP4-203ENST00000415188 DIEXFQ68CQ4 756 aaKnown RBP21.78■■□□□ 1.08
USP4-203ENST00000415188 A2MP01023 1474 aa21.77■■□□□ 1.08
USP4-203ENST00000415188 PLXNC1O60486 1568 aa21.77■■□□□ 1.08
USP4-203ENST00000415188 UHRF1BP1Q6BDS2 1440 aa21.75■■□□□ 1.07
USP4-203ENST00000415188 CNTLNQ9NXG0 1405 aa21.75■■□□□ 1.07
USP4-203ENST00000415188 CAMSAP2Q08AD1 1489 aa21.74■■□□□ 1.07
USP4-203ENST00000415188 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.72■■□□□ 1.07
USP4-203ENST00000415188 GGT6Q6P531 493 aa21.71■■□□□ 1.07
USP4-203ENST00000415188 RTEL1-TNFRSF6BF6WH68 1400 aa21.7■■□□□ 1.06
USP4-203ENST00000415188 SETD1BQ9UPS6 1966 aaKnown RBP21.7■■□□□ 1.06
USP4-203ENST00000415188 CCDC141Q6ZP82 1450 aa21.7■■□□□ 1.06
USP4-203ENST00000415188 ADGBQ8N7X0 1667 aa21.69■■□□□ 1.06
USP4-203ENST00000415188 ZMYM3Q14202 1370 aa21.69■■□□□ 1.06
USP4-203ENST00000415188 FBXO41Q8TF61 875 aa21.67■■□□□ 1.06
USP4-203ENST00000415188 MROH2AA6NES4 1674 aa21.67■■□□□ 1.06
USP4-203ENST00000415188 CLTCQ00610 1675 aaKnown RBP21.67■■□□□ 1.06
USP4-203ENST00000415188 DHX29Q7Z478 1369 aaKnown RBP21.65■■□□□ 1.06
USP4-203ENST00000415188 STRCQ7RTU9 1775 aa21.65■■□□□ 1.06
USP4-203ENST00000415188 RSPH4AQ5TD94 716 aa21.64■■□□□ 1.05
USP4-203ENST00000415188 NPATQ14207 1427 aa21.63■■□□□ 1.05
USP4-203ENST00000415188 ARHGEF5Q12774 1597 aa21.62■■□□□ 1.05
USP4-203ENST00000415188 SETD5Q9C0A6 1442 aa21.62■■□□□ 1.05
USP4-203ENST00000415188 PTPRKQ15262 1439 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms