RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ERICH6BQ5W0A0 696 aa13.57□□□□□ -0.24
CD44-206ENST00000415148 DAPK1P53355 1430 aa13.56□□□□□ -0.24
CD44-206ENST00000415148 RPRD2Q5VT52 1461 aaKnown RBP13.56□□□□□ -0.24
CD44-206ENST00000415148 ANKRD30BQ9BXX2 1392 aa13.56□□□□□ -0.24
CD44-206ENST00000415148 KIAA0586Q9BVV6 1533 aa13.55□□□□□ -0.24
CD44-206ENST00000415148 NCOA1Q15788 1441 aa13.55□□□□□ -0.24
CD44-206ENST00000415148 L3MBTL2Q969R5 705 aa13.55□□□□□ -0.24
CD44-206ENST00000415148 KIAA0556O60303 1618 aa13.53□□□□□ -0.24
CD44-206ENST00000415148 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
CD44-206ENST00000415148 ABCC5O15440 1437 aa13.53□□□□□ -0.24
CD44-206ENST00000415148 POLR1AO95602 1720 aaPredicted RBP13.53□□□□□ -0.24
CD44-206ENST00000415148 CCDC7Q96M83 1385 aa13.53□□□□□ -0.24
CD44-206ENST00000415148 CDK11AQ9UQ88 783 aaPredicted RBP13.52□□□□□ -0.24
CD44-206ENST00000415148 C11orf95C9JLR9 678 aaPredicted RBP13.52□□□□□ -0.25
CD44-206ENST00000415148 DISP1Q96F81 1524 aa13.51□□□□□ -0.25
CD44-206ENST00000415148 RAPGEF6Q8TEU7 1601 aa13.51□□□□□ -0.25
CD44-206ENST00000415148 TEX14Q8IWB6 1497 aa13.5□□□□□ -0.25
CD44-206ENST00000415148 NUP153P49790 1475 aaKnown RBP13.5□□□□□ -0.25
CD44-206ENST00000415148 ERCC6Q03468 1493 aa13.49□□□□□ -0.25
CD44-206ENST00000415148 SPATA31E1Q6ZUB1 1445 aa13.49□□□□□ -0.25
CD44-206ENST00000415148 FOXD1Q16676 465 aa13.49□□□□□ -0.25
CD44-206ENST00000415148 PRKRIP1Q9H875 184 aaPredicted RBP13.49□□□□□ -0.25
CD44-206ENST00000415148 ITSN2Q9NZM3 1697 aa13.47□□□□□ -0.25
CD44-206ENST00000415148 ADGBQ8N7X0 1667 aa13.46□□□□□ -0.25
CD44-206ENST00000415148 NBPF8Q3BBV2 869 aa13.46□□□□□ -0.25
CD44-206ENST00000415148 SLC4A1APQ9BWU0 796 aaKnown RBP13.46□□□□□ -0.25
CD44-206ENST00000415148 GRIN2AQ12879 1464 aa13.45□□□□□ -0.26
CD44-206ENST00000415148 TROQ12816 1431 aaPredicted RBP13.45□□□□□ -0.26
CD44-206ENST00000415148 FANCIQ9NVI1 1328 aa13.45□□□□□ -0.26
CD44-206ENST00000415148 ADCY10Q96PN6 1610 aa13.45□□□□□ -0.26
CD44-206ENST00000415148 ADGRL2O95490 1459 aa13.44□□□□□ -0.26
CD44-206ENST00000415148 FAM9BQ8IZU0 186 aa13.44□□□□□ -0.26
CD44-206ENST00000415148 B4GALNT3Q6L9W6 998 aa13.44□□□□□ -0.26
CD44-206ENST00000415148 ZBED9Q6R2W3 1325 aa13.44□□□□□ -0.26
CD44-206ENST00000415148 PZPP20742 1482 aa13.43□□□□□ -0.26
CD44-206ENST00000415148 ZNF608Q9ULD9 1512 aaPredicted RBP13.43□□□□□ -0.26
CD44-206ENST00000415148 ARID4BQ4LE39 1312 aaPredicted RBP13.43□□□□□ -0.26
CD44-206ENST00000415148 CAMSAP2Q08AD1 1489 aa13.43□□□□□ -0.26
CD44-206ENST00000415148 PPP4R2Q9NY27 417 aa13.42□□□□□ -0.26
CD44-206ENST00000415148 KIF7Q2M1P5 1343 aa13.42□□□□□ -0.26
CD44-206ENST00000415148 ZNF644Q9H582 1327 aaPredicted RBP13.42□□□□□ -0.26
CD44-206ENST00000415148 ARID3CA6NKF2 412 aa13.42□□□□□ -0.26
CD44-206ENST00000415148 CROCC2H7BZ55 1655 aa13.42□□□□□ -0.26
CD44-206ENST00000415148 MBD5Q9P267 1494 aa13.42□□□□□ -0.26
CD44-206ENST00000415148 KIAA1107Q9UPP5 1409 aa13.41□□□□□ -0.26
CD44-206ENST00000415148 MRS2Q9HD23 443 aa13.4□□□□□ -0.26
CD44-206ENST00000415148 GPATCH8Q9UKJ3 1502 aaKnown RBP13.4□□□□□ -0.26
CD44-206ENST00000415148 SENP3-EIF4A1A0A087X0R7 540 aa13.4□□□□□ -0.26
CD44-206ENST00000415148 MAGI1Q96QZ7 1491 aaPredicted RBP13.4□□□□□ -0.26
CD44-206ENST00000415148 CFDP1Q9UEE9 299 aaPredicted RBP13.39□□□□□ -0.27
CD44-206ENST00000415148 EIF4G3O43432 1585 aaKnown RBP13.39□□□□□ -0.27
CD44-206ENST00000415148 PRG4Q92954 1404 aaPredicted RBP13.38□□□□□ -0.27
CD44-206ENST00000415148 CNGB1Q14028 1251 aaPredicted RBP13.38□□□□□ -0.27
CD44-206ENST00000415148 ANKRD30AQ9BXX3 1397 aa13.38□□□□□ -0.27
CD44-206ENST00000415148 KIF14Q15058 1648 aa13.37□□□□□ -0.27
CD44-206ENST00000415148 UHRF1BP1Q6BDS2 1440 aa13.36□□□□□ -0.27
CD44-206ENST00000415148 CARMIL2Q6F5E8 1435 aa13.36□□□□□ -0.27
CD44-206ENST00000415148 SYNJ2O15056 1496 aa13.35□□□□□ -0.27
CD44-206ENST00000415148 SHANK2Q9UPX8 1470 aa13.35□□□□□ -0.27
CD44-206ENST00000415148 DHX29Q7Z478 1369 aaKnown RBP13.35□□□□□ -0.27
CD44-206ENST00000415148 KDM5CP41229 1560 aa13.34□□□□□ -0.27
CD44-206ENST00000415148 CEP170Q5SW79 1584 aa13.34□□□□□ -0.27
CD44-206ENST00000415148 ROCK2O75116 1388 aaKnown RBP13.34□□□□□ -0.27
CD44-206ENST00000415148 ERICH6Q7L0X2 663 aa13.34□□□□□ -0.27
CD44-206ENST00000415148 PLB1Q6P1J6 1458 aa13.33□□□□□ -0.28
CD44-206ENST00000415148 SMG6Q86US8 1419 aaKnown RBP13.33□□□□□ -0.28
CD44-206ENST00000415148 USP47Q96K76 1375 aa13.33□□□□□ -0.28
CD44-206ENST00000415148 ARHGEF12Q9NZN5 1544 aa13.33□□□□□ -0.28
CD44-206ENST00000415148 ANKRD50Q9ULJ7 1429 aa13.32□□□□□ -0.28
CD44-206ENST00000415148 KDM5DQ9BY66 1539 aa13.32□□□□□ -0.28
CD44-206ENST00000415148 BCORL1Q5H9F3 1711 aa13.32□□□□□ -0.28
CD44-206ENST00000415148 PKD2Q13563 968 aa13.32□□□□□ -0.28
CD44-206ENST00000415148 RALGAPBQ86X10 1494 aa13.31□□□□□ -0.28
CD44-206ENST00000415148 CHMP7Q8WUX9 453 aaPredicted RBP13.31□□□□□ -0.28
CD44-206ENST00000415148 NUP160Q12769 1436 aa13.31□□□□□ -0.28
CD44-206ENST00000415148 PAK3O75914 559 aaPredicted RBP13.3□□□□□ -0.28
CD44-206ENST00000415148 CDC42BPAQ5VT25 1732 aa13.3□□□□□ -0.28
CD44-206ENST00000415148 ABCA8O94911 1581 aa13.29□□□□□ -0.28
CD44-206ENST00000415148 ABCC10Q5T3U5 1492 aa13.29□□□□□ -0.28
CD44-206ENST00000415148 PLEKHD1A6NEE1 506 aa13.29□□□□□ -0.28
CD44-206ENST00000415148 JPH4Q96JJ6 628 aa13.29□□□□□ -0.28
CD44-206ENST00000415148 KTN1Q86UP2 1357 aaKnown RBP13.29□□□□□ -0.28
CD44-206ENST00000415148 RNF123Q5XPI4 1314 aa13.28□□□□□ -0.28
CD44-206ENST00000415148 ZNF777Q9ULD5 760 aaPredicted RBP13.28□□□□□ -0.28
CD44-206ENST00000415148 ARHGEF5Q12774 1597 aa13.27□□□□□ -0.29
CD44-206ENST00000415148 C9orf84Q5VXU9 1444 aa13.27□□□□□ -0.29
CD44-206ENST00000415148 PTPRGP23470 1445 aa13.26□□□□□ -0.29
CD44-206ENST00000415148 NUDCQ9Y266 331 aa13.26□□□□□ -0.29
CD44-206ENST00000415148 NUP155O75694 1391 aa13.26□□□□□ -0.29
CD44-206ENST00000415148 TSPY4P0CV99 314 aa13.25□□□□□ -0.29
CD44-206ENST00000415148 TSPY10P0CW01 314 aa13.25□□□□□ -0.29
CD44-206ENST00000415148 DEKP35659 375 aaKnown RBP13.25□□□□□ -0.29
CD44-206ENST00000415148 POLR3GLQ9BT43 218 aa13.25□□□□□ -0.29
CD44-206ENST00000415148 ATP10BO94823 1461 aa13.25□□□□□ -0.29
CD44-206ENST00000415148 KIF15Q9NS87 1388 aa13.24□□□□□ -0.29
CD44-206ENST00000415148 NBR1Q14596 966 aa13.24□□□□□ -0.29
CD44-206ENST00000415148 PNISRQ8TF01 805 aaKnown RBP13.24□□□□□ -0.29
CD44-206ENST00000415148 RSPH4AQ5TD94 716 aa13.23□□□□□ -0.29
CD44-206ENST00000415148 CARD11Q9BXL7 1154 aa13.22□□□□□ -0.29
CD44-206ENST00000415148 RALBP1Q15311 655 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms