RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 HSP90AB1P08238 724 aaKnown RBP5.72□□□□□ -1.49
PTPN13-202ENST00000411767 SHTN1A0MZ66 631 aa5.72□□□□□ -1.49
PTPN13-202ENST00000411767 SETSIPP0DME0 302 aa5.72□□□□□ -1.49
PTPN13-202ENST00000411767 A0A0G2JS52 829 aa5.72□□□□□ -1.49
PTPN13-202ENST00000411767 CCP110O43303 1012 aa5.72□□□□□ -1.49
PTPN13-202ENST00000411767 HSP90AA2PQ14568 343 aaPredicted RBP5.72□□□□□ -1.49
PTPN13-202ENST00000411767 TCHPQ9BT92 498 aa5.72□□□□□ -1.49
PTPN13-202ENST00000411767 GTPBP4Q9BZE4 634 aaKnown RBP5.72□□□□□ -1.49
PTPN13-202ENST00000411767 H0YHG0 523 aa5.71□□□□□ -1.49
PTPN13-202ENST00000411767 KCNJ4P48050 445 aa5.71□□□□□ -1.49
PTPN13-202ENST00000411767 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.71□□□□□ -1.49
PTPN13-202ENST00000411767 PAF1Q8N7H5 531 aa5.71□□□□□ -1.5
PTPN13-202ENST00000411767 CLASRPQ8N2M8 674 aaKnown RBP5.71□□□□□ -1.5
PTPN13-202ENST00000411767 DDX23Q9BUQ8 820 aaKnown RBP5.71□□□□□ -1.5
PTPN13-202ENST00000411767 PPP1R1BQ9UD71 204 aaPredicted RBP5.71□□□□□ -1.5
PTPN13-202ENST00000411767 PLCD4Q9BRC7 762 aa5.71□□□□□ -1.5
PTPN13-202ENST00000411767 DEF6Q9H4E7 631 aa5.7□□□□□ -1.5
PTPN13-202ENST00000411767 TMX4Q9H1E5 349 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-202ENST00000411767 NAP1L2Q9ULW6 460 aaPredicted RBP5.7□□□□□ -1.5
PTPN13-202ENST00000411767 GSE1Q14687 1217 aa5.7□□□□□ -1.5
PTPN13-202ENST00000411767 RASSF8Q8NHQ8 419 aa5.7□□□□□ -1.5
PTPN13-202ENST00000411767 CCAR1Q8IX12 1150 aaKnown RBP5.7□□□□□ -1.5
PTPN13-202ENST00000411767 CCDC66A2RUB6 948 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 CSRNP3Q8WYN3 585 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 GIMAP7Q8NHV1 300 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 E9PSI1 815 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 CHMP4AQ9BY43 222 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 KIF3AQ9Y496 699 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 MFAP1P55081 439 aaKnown RBP5.69□□□□□ -1.5
PTPN13-202ENST00000411767 HSP90AB3PQ58FF7 597 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 TMCO5BA8MYB1 307 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 GRIPAP1Q4V328 841 aa5.69□□□□□ -1.5
PTPN13-202ENST00000411767 ERCC4Q92889 916 aaPredicted RBP5.69□□□□□ -1.5
PTPN13-202ENST00000411767 EIF3JO75822 258 aaKnown RBP5.68□□□□□ -1.5
PTPN13-202ENST00000411767 IPO7O95373 1038 aaKnown RBP5.68□□□□□ -1.5
PTPN13-202ENST00000411767 SOGA3Q5TF21 947 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 KIF3BO15066 747 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 MBD3O95983 291 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 C14orf37Q86TY3 774 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 GOLGA6L10A0A0M3HER8 536 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 GOLGA6L10A6NI86 522 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 GOLGA6L19H0YKK7 550 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 ZWINTO95229 277 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 ODF2Q5BJF6 829 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 TAF3Q5VWG9 929 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.68□□□□□ -1.5
PTPN13-202ENST00000411767 V9GYY5 206 aaPredicted RBP5.68□□□□□ -1.5
PTPN13-202ENST00000411767 KIF16BQ96L93 1317 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 STAMBPO95630 424 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 TPRNQ4KMQ1 711 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 HSCBQ8IWL3 235 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 SEPT6Q14141 434 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 ERC1Q8IUD2 1116 aa5.68□□□□□ -1.5
PTPN13-202ENST00000411767 HSP90B2PQ58FF3 399 aa5.67□□□□□ -1.5
PTPN13-202ENST00000411767 RALBP1Q15311 655 aa5.67□□□□□ -1.5
PTPN13-202ENST00000411767 SUPT16HQ9Y5B9 1047 aaKnown RBP5.67□□□□□ -1.5
PTPN13-202ENST00000411767 MS4A1P11836 297 aa5.67□□□□□ -1.5
PTPN13-202ENST00000411767 CHMP4CQ96CF2 233 aa5.67□□□□□ -1.5
PTPN13-202ENST00000411767 STAG3Q9UJ98 1225 aa5.67□□□□□ -1.5
PTPN13-202ENST00000411767 RSPH6AQ9H0K4 717 aa5.66□□□□□ -1.5
PTPN13-202ENST00000411767 FAM114A1Q8IWE2 563 aa5.66□□□□□ -1.5
PTPN13-202ENST00000411767 ZNF526Q8TF50 670 aaPredicted RBP5.66□□□□□ -1.5
PTPN13-202ENST00000411767 SCAF1Q9H7N4 1312 aaKnown RBP5.66□□□□□ -1.5
PTPN13-202ENST00000411767 CEP63Q96MT8 703 aa5.66□□□□□ -1.5
PTPN13-202ENST00000411767 HOMER1Q86YM7 354 aa5.65□□□□□ -1.5
PTPN13-202ENST00000411767 CFAP53Q96M91 514 aa5.65□□□□□ -1.5
PTPN13-202ENST00000411767 HDAC5Q9UQL6 1122 aa5.65□□□□□ -1.5
PTPN13-202ENST00000411767 ANKRD18BA2A2Z9 1011 aa5.65□□□□□ -1.51
PTPN13-202ENST00000411767 OS9Q13438 667 aaPredicted RBP5.65□□□□□ -1.51
PTPN13-202ENST00000411767 TCEAL9Q9UHQ7 104 aa5.65□□□□□ -1.51
PTPN13-202ENST00000411767 TPD52L1Q16890 204 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 FTSJ3Q8IY81 847 aaKnown RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 ANKRD20A12PQ8NF67 263 aa5.64□□□□□ -1.51
PTPN13-202ENST00000411767 MAP3K7CLP57077 242 aa5.64□□□□□ -1.51
PTPN13-202ENST00000411767 SEPT8Q92599 483 aa5.64□□□□□ -1.51
PTPN13-202ENST00000411767 TRIM35Q9UPQ4 493 aa5.64□□□□□ -1.51
PTPN13-202ENST00000411767 RTF1Q92541 710 aaKnown RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC97Q96F63 343 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 FAM114A2Q9NRY5 505 aa5.64□□□□□ -1.51
PTPN13-202ENST00000411767 CT47A1Q5JQC4 288 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC47Q96A33 483 aaKnown RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 GBP2P32456 591 aaPredicted RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 RABEP1Q15276 862 aa5.64□□□□□ -1.51
PTPN13-202ENST00000411767 MTERF4Q7Z6M4 381 aaKnown RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 PAIP2Q9BPZ3 127 aaKnown RBP5.64□□□□□ -1.51
PTPN13-202ENST00000411767 SHROOM4Q9ULL8 1493 aa5.63□□□□□ -1.51
PTPN13-202ENST00000411767 FAM161AQ3B820 660 aa5.63□□□□□ -1.51
PTPN13-202ENST00000411767 KIAA0754O94854 1291 aa5.63□□□□□ -1.51
PTPN13-202ENST00000411767 ARID3AQ99856 593 aa5.63□□□□□ -1.51
PTPN13-202ENST00000411767 SEPT7Q16181 437 aaKnown RBP5.63□□□□□ -1.51
PTPN13-202ENST00000411767 ERLIN2O94905 339 aa5.63□□□□□ -1.51
PTPN13-202ENST00000411767 CCDC6Q16204 474 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 MARCH6O60337 910 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 LETM1O95202 739 aaPredicted RBP5.62□□□□□ -1.51
PTPN13-202ENST00000411767 TAOK2Q9UL54 1235 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 DAAM2Q86T65 1068 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 TAX1BP1Q86VP1 789 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 RNF168Q8IYW5 571 aaPredicted RBP5.62□□□□□ -1.51
PTPN13-202ENST00000411767 HSP90AB2PQ58FF8 381 aa5.62□□□□□ -1.51
PTPN13-202ENST00000411767 SEPT14Q6ZU15 432 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms