RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 ATP1B4Q9UN42 357 aaPredicted RBP17.44■□□□□ 0.38
LINC00539-201ENST00000411525 LRRC9Q6ZRR7 1453 aa17.44■□□□□ 0.38
LINC00539-201ENST00000411525 ARHGEF40Q8TER5 1519 aa17.42■□□□□ 0.38
LINC00539-201ENST00000411525 TTC37Q6PGP7 1564 aa17.4■□□□□ 0.38
LINC00539-201ENST00000411525 KANK4Q5T7N3 995 aaPredicted RBP17.4■□□□□ 0.38
LINC00539-201ENST00000411525 CDK13Q14004 1512 aaKnown RBP17.4■□□□□ 0.38
LINC00539-201ENST00000411525 MADDQ8WXG6 1647 aa17.39■□□□□ 0.38
LINC00539-201ENST00000411525 EHBP1L1Q8N3D4 1523 aa17.39■□□□□ 0.37
LINC00539-201ENST00000411525 TRIM26Q12899 539 aaPredicted RBP17.39■□□□□ 0.37
LINC00539-201ENST00000411525 POGZQ7Z3K3 1410 aa17.38■□□□□ 0.37
LINC00539-201ENST00000411525 ZMYM4Q5VZL5 1548 aa17.38■□□□□ 0.37
LINC00539-201ENST00000411525 CDK11AQ9UQ88 783 aaPredicted RBP17.38■□□□□ 0.37
LINC00539-201ENST00000411525 MAGI2Q86UL8 1455 aa17.37■□□□□ 0.37
LINC00539-201ENST00000411525 PLCH2O75038 1416 aa17.36■□□□□ 0.37
LINC00539-201ENST00000411525 ZFYVE16Q7Z3T8 1539 aa17.36■□□□□ 0.37
LINC00539-201ENST00000411525 RIMS1Q86UR5 1692 aaKnown RBP17.35■□□□□ 0.37
LINC00539-201ENST00000411525 MYO5CQ9NQX4 1742 aa17.35■□□□□ 0.37
LINC00539-201ENST00000411525 MTUS2Q5JR59 1369 aa17.33■□□□□ 0.36
LINC00539-201ENST00000411525 SUPT6HQ7KZ85 1726 aaKnown RBP17.32■□□□□ 0.36
LINC00539-201ENST00000411525 SCAPERQ9BY12 1400 aa17.31■□□□□ 0.36
LINC00539-201ENST00000411525 EFCAB2Q5VUJ9 269 aa17.31■□□□□ 0.36
LINC00539-201ENST00000411525 KIF14Q15058 1648 aa17.29■□□□□ 0.36
LINC00539-201ENST00000411525 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
LINC00539-201ENST00000411525 YEATS2Q9ULM3 1422 aa17.29■□□□□ 0.36
LINC00539-201ENST00000411525 LMTK3Q96Q04 1460 aa17.28■□□□□ 0.36
LINC00539-201ENST00000411525 FER1L4A9Z1Z3 1794 aa17.28■□□□□ 0.36
LINC00539-201ENST00000411525 FBXO41Q8TF61 875 aa17.27■□□□□ 0.36
LINC00539-201ENST00000411525 TROQ12816 1431 aaPredicted RBP17.26■□□□□ 0.35
LINC00539-201ENST00000411525 ATP10AO60312 1499 aa17.25■□□□□ 0.35
LINC00539-201ENST00000411525 NCOA2Q15596 1464 aa17.25■□□□□ 0.35
LINC00539-201ENST00000411525 SIGLEC1Q9BZZ2 1709 aa17.25■□□□□ 0.35
LINC00539-201ENST00000411525 RRBP1Q9P2E9 1410 aaKnown RBP17.24■□□□□ 0.35
LINC00539-201ENST00000411525 ZNF518AQ6AHZ1 1483 aa17.24■□□□□ 0.35
LINC00539-201ENST00000411525 C9orf84Q5VXU9 1444 aa17.23■□□□□ 0.35
LINC00539-201ENST00000411525 ARHGAP5Q13017 1502 aa17.23■□□□□ 0.35
LINC00539-201ENST00000411525 MLECQ14165 292 aa17.22■□□□□ 0.35
LINC00539-201ENST00000411525 PLPPR3Q6T4P5 718 aa17.21■□□□□ 0.35
LINC00539-201ENST00000411525 CDC42BPBQ9Y5S2 1711 aa17.19■□□□□ 0.34
LINC00539-201ENST00000411525 SETD1BQ9UPS6 1966 aaKnown RBP17.19■□□□□ 0.34
LINC00539-201ENST00000411525 ARHGEF12Q9NZN5 1544 aa17.19■□□□□ 0.34
LINC00539-201ENST00000411525 KDM5CP41229 1560 aa17.19■□□□□ 0.34
LINC00539-201ENST00000411525 MYT1LQ9UL68 1186 aa17.18■□□□□ 0.34
LINC00539-201ENST00000411525 CCNB3Q8WWL7 1395 aa17.17■□□□□ 0.34
LINC00539-201ENST00000411525 MYOM3Q5VTT5 1437 aa17.17■□□□□ 0.34
LINC00539-201ENST00000411525 HSPA2P54652 639 aa17.16■□□□□ 0.34
LINC00539-201ENST00000411525 AFAP1Q8N556 730 aa17.16■□□□□ 0.34
LINC00539-201ENST00000411525 FGD6Q6ZV73 1430 aa17.15■□□□□ 0.34
LINC00539-201ENST00000411525 PREX2Q70Z35 1606 aa17.15■□□□□ 0.34
LINC00539-201ENST00000411525 PREX1Q8TCU6 1659 aa17.15■□□□□ 0.34
LINC00539-201ENST00000411525 ITSN2Q9NZM3 1697 aa17.15■□□□□ 0.34
LINC00539-201ENST00000411525 REREQ9P2R6 1566 aa17.14■□□□□ 0.33
LINC00539-201ENST00000411525 MLH3Q9UHC1 1453 aa17.13■□□□□ 0.33
LINC00539-201ENST00000411525 DIP2CQ9Y2E4 1556 aa17.11■□□□□ 0.33
LINC00539-201ENST00000411525 PTPN23Q9H3S7 1636 aa17.11■□□□□ 0.33
LINC00539-201ENST00000411525 ABCC1P33527 1531 aa17.11■□□□□ 0.33
LINC00539-201ENST00000411525 CDC42BPAQ5VT25 1732 aa17.1■□□□□ 0.33
LINC00539-201ENST00000411525 ESF1Q9H501 851 aaKnown RBP17.09■□□□□ 0.33
LINC00539-201ENST00000411525 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.09■□□□□ 0.33
LINC00539-201ENST00000411525 MIA2Q96PC5 1412 aa17.09■□□□□ 0.33
LINC00539-201ENST00000411525 ABCA6Q8N139 1617 aa17.09■□□□□ 0.33
LINC00539-201ENST00000411525 AGLP35573 1532 aa17.08■□□□□ 0.32
LINC00539-201ENST00000411525 TCOF1Q13428 1488 aaKnown RBP17.08■□□□□ 0.32
LINC00539-201ENST00000411525 DMRT2Q9Y5R5 561 aa17.08■□□□□ 0.32
LINC00539-201ENST00000411525 CEBPAP49715 358 aaPredicted RBP17.07■□□□□ 0.32
LINC00539-201ENST00000411525 TRAPPC8Q9Y2L5 1435 aa17.06■□□□□ 0.32
LINC00539-201ENST00000411525 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
LINC00539-201ENST00000411525 UHRF1BP1Q6BDS2 1440 aa17.05■□□□□ 0.32
LINC00539-201ENST00000411525 KIDINS220Q9ULH0 1771 aa17.05■□□□□ 0.32
LINC00539-201ENST00000411525 C3P01024 1663 aa17.04■□□□□ 0.32
LINC00539-201ENST00000411525 CERKQ8TCT0 537 aa17.04■□□□□ 0.32
LINC00539-201ENST00000411525 FAM50AQ14320 339 aaKnown RBP17.03■□□□□ 0.32
LINC00539-201ENST00000411525 CNTLNQ9NXG0 1405 aa17.02■□□□□ 0.31
LINC00539-201ENST00000411525 ZNF777Q9ULD5 760 aaPredicted RBP17.01■□□□□ 0.31
LINC00539-201ENST00000411525 STRCQ7RTU9 1775 aa17.01■□□□□ 0.31
LINC00539-201ENST00000411525 SAMD9LQ8IVG5 1584 aa17■□□□□ 0.31
LINC00539-201ENST00000411525 CAMSAP2Q08AD1 1489 aa16.99■□□□□ 0.31
LINC00539-201ENST00000411525 PLEKHH2Q8IVE3 1493 aa16.99■□□□□ 0.31
LINC00539-201ENST00000411525 SPAG9O60271 1321 aaKnown RBP16.98■□□□□ 0.31
LINC00539-201ENST00000411525 MROH2AA6NES4 1674 aa16.97■□□□□ 0.31
LINC00539-201ENST00000411525 KIAA1107Q9UPP5 1409 aa16.97■□□□□ 0.31
LINC00539-201ENST00000411525 SYCP2Q9BX26 1530 aa16.97■□□□□ 0.31
LINC00539-201ENST00000411525 DNMT1P26358 1616 aaKnown RBP16.97■□□□□ 0.31
LINC00539-201ENST00000411525 CFDP1Q9UEE9 299 aaPredicted RBP16.97■□□□□ 0.31
LINC00539-201ENST00000411525 HNRNPMP52272 730 aaKnown RBP eCLIP16.95■□□□□ 0.3
LINC00539-201ENST00000411525 ITGAEP38570 1179 aa16.94■□□□□ 0.3
LINC00539-201ENST00000411525 ATP7AQ04656 1500 aa16.94■□□□□ 0.3
LINC00539-201ENST00000411525 PTPRTO14522 1441 aa16.94■□□□□ 0.3
LINC00539-201ENST00000411525 CROCC2H7BZ55 1655 aa16.93■□□□□ 0.3
LINC00539-201ENST00000411525 NPATQ14207 1427 aa16.92■□□□□ 0.3
LINC00539-201ENST00000411525 INO80Q9ULG1 1556 aaPredicted RBP16.91■□□□□ 0.3
LINC00539-201ENST00000411525 DAPK1P53355 1430 aa16.91■□□□□ 0.3
LINC00539-201ENST00000411525 ADGBQ8N7X0 1667 aa16.91■□□□□ 0.3
LINC00539-201ENST00000411525 PTPRKQ15262 1439 aa16.9■□□□□ 0.3
LINC00539-201ENST00000411525 A2MP01023 1474 aa16.9■□□□□ 0.3
LINC00539-201ENST00000411525 ZNF644Q9H582 1327 aaPredicted RBP16.9■□□□□ 0.3
LINC00539-201ENST00000411525 ZMYM3Q14202 1370 aa16.89■□□□□ 0.3
LINC00539-201ENST00000411525 ARHGEF5Q12774 1597 aa16.89■□□□□ 0.3
LINC00539-201ENST00000411525 PLXNC1O60486 1568 aa16.89■□□□□ 0.29
LINC00539-201ENST00000411525 ABCC5O15440 1437 aa16.88■□□□□ 0.29
LINC00539-201ENST00000411525 PPP6R1Q9UPN7 881 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms