RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 CDK13Q14004 1512 aaKnown RBP15.61■□□□□ 0.09
SNX13-202ENST00000409604 A0A0G2JS52 829 aa15.61■□□□□ 0.09
SNX13-202ENST00000409604 HNRNPUQ00839 825 aaKnown RBP eCLIP15.61■□□□□ 0.09
SNX13-202ENST00000409604 KANK1Q14678 1352 aa15.6■□□□□ 0.09
SNX13-202ENST00000409604 GRIN2AQ12879 1464 aa15.6■□□□□ 0.09
SNX13-202ENST00000409604 SYNJ2O15056 1496 aa15.58■□□□□ 0.09
SNX13-202ENST00000409604 MRS2Q9HD23 443 aa15.58■□□□□ 0.08
SNX13-202ENST00000409604 KIF21AQ7Z4S6 1674 aa15.58■□□□□ 0.08
SNX13-202ENST00000409604 KIAA0586Q9BVV6 1533 aa15.57■□□□□ 0.08
SNX13-202ENST00000409604 LRRC9Q6ZRR7 1453 aa15.57■□□□□ 0.08
SNX13-202ENST00000409604 NCOA2Q15596 1464 aa15.56■□□□□ 0.08
SNX13-202ENST00000409604 CASKIN1Q8WXD9 1431 aa15.55■□□□□ 0.08
SNX13-202ENST00000409604 ERICH3Q5RHP9 1530 aa15.55■□□□□ 0.08
SNX13-202ENST00000409604 CC2D1BQ5T0F9 858 aaKnown RBP15.55■□□□□ 0.08
SNX13-202ENST00000409604 FGD6Q6ZV73 1430 aa15.54■□□□□ 0.08
SNX13-202ENST00000409604 HSPA5P11021 654 aaKnown RBP15.52■□□□□ 0.07
SNX13-202ENST00000409604 SRPK2P78362 688 aaKnown RBP15.52■□□□□ 0.07
SNX13-202ENST00000409604 GTF3C3Q9Y5Q9 886 aa15.51■□□□□ 0.07
SNX13-202ENST00000409604 TRAK1Q9UPV9 953 aa15.51■□□□□ 0.07
SNX13-202ENST00000409604 MYOM3Q5VTT5 1437 aa15.5■□□□□ 0.07
SNX13-202ENST00000409604 SCAPERQ9BY12 1400 aa15.5■□□□□ 0.07
SNX13-202ENST00000409604 KIF15Q9NS87 1388 aa15.5■□□□□ 0.07
SNX13-202ENST00000409604 RSPH4AQ5TD94 716 aa15.49■□□□□ 0.07
SNX13-202ENST00000409604 NEUROD2Q15784 382 aa15.49■□□□□ 0.07
SNX13-202ENST00000409604 NEFMP07197 916 aa15.49■□□□□ 0.07
SNX13-202ENST00000409604 UACAQ9BZF9 1416 aa15.48■□□□□ 0.07
SNX13-202ENST00000409604 IQGAP2Q13576 1575 aa15.48■□□□□ 0.07
SNX13-202ENST00000409604 DHX57Q6P158 1386 aaKnown RBP15.47■□□□□ 0.07
SNX13-202ENST00000409604 MAGI1Q96QZ7 1491 aaPredicted RBP15.47■□□□□ 0.07
SNX13-202ENST00000409604 IRX6P78412 446 aaPredicted RBP15.47■□□□□ 0.07
SNX13-202ENST00000409604 ARHGAP5Q13017 1502 aa15.47■□□□□ 0.07
SNX13-202ENST00000409604 ARHGEF11O15085 1522 aa15.46■□□□□ 0.07
SNX13-202ENST00000409604 HAP1P54257 671 aaPredicted RBP15.46■□□□□ 0.07
SNX13-202ENST00000409604 KNSTRNQ9Y448 316 aa15.44■□□□□ 0.06
SNX13-202ENST00000409604 BIVM-ERCC5R4GMW8 1640 aa15.43■□□□□ 0.06
SNX13-202ENST00000409604 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
SNX13-202ENST00000409604 CANXP27824 592 aaKnown RBP15.42■□□□□ 0.06
SNX13-202ENST00000409604 TROQ12816 1431 aaPredicted RBP15.41■□□□□ 0.06
SNX13-202ENST00000409604 TMEM132EQ6IEE7 984 aa15.41■□□□□ 0.06
SNX13-202ENST00000409604 WDR43Q15061 677 aaKnown RBP eCLIP15.41■□□□□ 0.06
SNX13-202ENST00000409604 FYCO1Q9BQS8 1478 aa15.4■□□□□ 0.06
SNX13-202ENST00000409604 PAK3O75914 559 aaPredicted RBP15.4■□□□□ 0.06
SNX13-202ENST00000409604 ROCK2O75116 1388 aaKnown RBP15.4■□□□□ 0.06
SNX13-202ENST00000409604 ST20-MTHFSA0A0A6YYL1 179 aa15.4■□□□□ 0.06
SNX13-202ENST00000409604 CLSPNQ9HAW4 1339 aa15.39■□□□□ 0.06
SNX13-202ENST00000409604 ANKRD50Q9ULJ7 1429 aa15.39■□□□□ 0.05
SNX13-202ENST00000409604 CEBPAP49715 358 aaPredicted RBP15.38■□□□□ 0.05
SNX13-202ENST00000409604 PCF11O94913 1555 aaKnown RBP15.37■□□□□ 0.05
SNX13-202ENST00000409604 TMF1P82094 1093 aa15.35■□□□□ 0.05
SNX13-202ENST00000409604 CCDC144AA2RUR9 1427 aa15.35■□□□□ 0.05
SNX13-202ENST00000409604 U2SURPO15042 1029 aaKnown RBP15.34■□□□□ 0.05
SNX13-202ENST00000409604 EIF4G3O43432 1585 aaKnown RBP15.34■□□□□ 0.05
SNX13-202ENST00000409604 MINK1Q8N4C8 1332 aaPredicted RBP15.34■□□□□ 0.05
SNX13-202ENST00000409604 EID1Q9Y6B2 187 aa15.33■□□□□ 0.04
SNX13-202ENST00000409604 EFCAB5A4FU69 1503 aa15.33■□□□□ 0.04
SNX13-202ENST00000409604 CD109Q6YHK3 1445 aa15.33■□□□□ 0.04
SNX13-202ENST00000409604 HDGFP51858 240 aaKnown RBP15.32■□□□□ 0.04
SNX13-202ENST00000409604 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.31■□□□□ 0.04
SNX13-202ENST00000409604 TIAM1Q13009 1591 aa15.31■□□□□ 0.04
SNX13-202ENST00000409604 CUL7Q14999 1698 aa15.31■□□□□ 0.04
SNX13-202ENST00000409604 FKBP8Q14318 412 aa15.31■□□□□ 0.04
SNX13-202ENST00000409604 RBM33Q96EV2 1170 aaKnown RBP15.3■□□□□ 0.04
SNX13-202ENST00000409604 CFAP70Q5T0N1 1121 aa15.29■□□□□ 0.04
SNX13-202ENST00000409604 FBXO31Q5XUX0 539 aaPredicted RBP15.29■□□□□ 0.04
SNX13-202ENST00000409604 C9orf84Q5VXU9 1444 aa15.29■□□□□ 0.04
SNX13-202ENST00000409604 LAS1LQ9Y4W2 734 aaKnown RBP15.29■□□□□ 0.04
SNX13-202ENST00000409604 NBPF1Q3BBV0 1214 aa15.28■□□□□ 0.04
SNX13-202ENST00000409604 ACIN1Q9UKV3 1341 aaKnown RBP15.28■□□□□ 0.04
SNX13-202ENST00000409604 MYT1Q01538 1121 aa15.28■□□□□ 0.04
SNX13-202ENST00000409604 SLC26A8Q96RN1 970 aa15.28■□□□□ 0.04
SNX13-202ENST00000409604 CDCA8Q53HL2 280 aa15.28■□□□□ 0.04
SNX13-202ENST00000409604 ERICH6Q7L0X2 663 aa15.27■□□□□ 0.04
SNX13-202ENST00000409604 WDR62O43379 1518 aa15.27■□□□□ 0.04
SNX13-202ENST00000409604 ATP10BO94823 1461 aa15.26■□□□□ 0.03
SNX13-202ENST00000409604 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
SNX13-202ENST00000409604 ARXQ96QS3 562 aa15.24■□□□□ 0.03
SNX13-202ENST00000409604 HECW1Q76N89 1606 aa15.23■□□□□ 0.03
SNX13-202ENST00000409604 MORC1Q86VD1 984 aa15.23■□□□□ 0.03
SNX13-202ENST00000409604 LTV1Q96GA3 475 aaPredicted RBP15.22■□□□□ 0.03
SNX13-202ENST00000409604 RRBP1Q9P2E9 1410 aaKnown RBP15.22■□□□□ 0.03
SNX13-202ENST00000409604 VGFO15240 615 aaPredicted RBP15.22■□□□□ 0.03
SNX13-202ENST00000409604 NGDNQ8NEJ9 315 aaKnown RBP15.22■□□□□ 0.03
SNX13-202ENST00000409604 TIMELESSQ9UNS1 1208 aa15.22■□□□□ 0.03
SNX13-202ENST00000409604 NBPF8Q3BBV2 869 aa15.21■□□□□ 0.03
SNX13-202ENST00000409604 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
SNX13-202ENST00000409604 NUP153P49790 1475 aaKnown RBP15.21■□□□□ 0.03
SNX13-202ENST00000409604 ASXL2Q76L83 1435 aa15.21■□□□□ 0.03
SNX13-202ENST00000409604 DAPK1P53355 1430 aa15.21■□□□□ 0.02
SNX13-202ENST00000409604 TXNDC2Q86VQ3 553 aa15.2■□□□□ 0.02
SNX13-202ENST00000409604 ADAMTS12P58397 1594 aa15.2■□□□□ 0.02
SNX13-202ENST00000409604 EHBP1L1Q8N3D4 1523 aa15.2■□□□□ 0.02
SNX13-202ENST00000409604 NUTM2GQ5VZR2 741 aa15.19■□□□□ 0.02
SNX13-202ENST00000409604 PANK3Q9H999 370 aa15.18■□□□□ 0.02
SNX13-202ENST00000409604 ADGRL1O94910 1474 aa15.17■□□□□ 0.02
SNX13-202ENST00000409604 CFAP53Q96M91 514 aa15.17■□□□□ 0.02
SNX13-202ENST00000409604 ABCC5O15440 1437 aa15.17■□□□□ 0.02
SNX13-202ENST00000409604 CABP2Q9NPB3 220 aa15.15■□□□□ 0.02
SNX13-202ENST00000409604 NAIPQ13075 1403 aa15.15■□□□□ 0.02
SNX13-202ENST00000409604 PTPRKQ15262 1439 aa15.14■□□□□ 0.01
SNX13-202ENST00000409604 MIA2Q96PC5 1412 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms