RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 PSEN1P49768 467 aa9.98□□□□□ -0.81
HMGB3P18-201ENST00000406327 PCDHB8Q9UN66 801 aa9.96□□□□□ -0.82
HMGB3P18-201ENST00000406327 EMP3P54852 163 aa9.95□□□□□ -0.82
HMGB3P18-201ENST00000406327 C3orf67Q6ZVT6 689 aa9.94□□□□□ -0.82
HMGB3P18-201ENST00000406327 TULP1O00294 542 aaPredicted RBP9.92□□□□□ -0.82
HMGB3P18-201ENST00000406327 L3MBTL3Q96JM7 780 aaPredicted RBP9.92□□□□□ -0.82
HMGB3P18-201ENST00000406327 PDCD7Q8N8D1 485 aaKnown RBP9.91□□□□□ -0.82
HMGB3P18-201ENST00000406327 MFRPQ9BY79 579 aa9.91□□□□□ -0.82
HMGB3P18-201ENST00000406327 SOX12O15370 315 aa9.9□□□□□ -0.82
HMGB3P18-201ENST00000406327 NLRP6P59044 892 aa9.9□□□□□ -0.82
HMGB3P18-201ENST00000406327 GOLGA2Q08379 1002 aa9.89□□□□□ -0.83
HMGB3P18-201ENST00000406327 HS3ST6Q96QI5 342 aa9.89□□□□□ -0.83
HMGB3P18-201ENST00000406327 MKRN3Q13064 507 aaKnown RBP9.88□□□□□ -0.83
HMGB3P18-201ENST00000406327 KRTAP3-3Q9BYR6 98 aa9.88□□□□□ -0.83
HMGB3P18-201ENST00000406327 KRTAP3-2Q9BYR7 98 aa9.88□□□□□ -0.83
HMGB3P18-201ENST00000406327 FAM205CA6NFA0 338 aa9.86□□□□□ -0.83
HMGB3P18-201ENST00000406327 CADPS2Q86UW7 1296 aa9.86□□□□□ -0.83
HMGB3P18-201ENST00000406327 KCNV2Q8TDN2 545 aa9.86□□□□□ -0.83
HMGB3P18-201ENST00000406327 POTEB3A0JP26 581 aa9.84□□□□□ -0.83
HMGB3P18-201ENST00000406327 POTEBQ6S5H4 581 aa9.84□□□□□ -0.83
HMGB3P18-201ENST00000406327 CABP2Q9NPB3 220 aa9.84□□□□□ -0.83
HMGB3P18-201ENST00000406327 EFCAB3Q8N7B9 438 aa9.83□□□□□ -0.84
HMGB3P18-201ENST00000406327 ARHGEF1Q92888 912 aaKnown RBP9.83□□□□□ -0.84
HMGB3P18-201ENST00000406327 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.82□□□□□ -0.84
HMGB3P18-201ENST00000406327 FBXO22Q8NEZ5 403 aa9.81□□□□□ -0.84
HMGB3P18-201ENST00000406327 E2F4Q16254 413 aa9.8□□□□□ -0.84
HMGB3P18-201ENST00000406327 LMOD2Q6P5Q4 547 aa9.79□□□□□ -0.84
HMGB3P18-201ENST00000406327 PHF8Q9UPP1 1060 aa9.78□□□□□ -0.84
HMGB3P18-201ENST00000406327 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.77□□□□□ -0.85
HMGB3P18-201ENST00000406327 ERICH6Q7L0X2 663 aa9.76□□□□□ -0.85
HMGB3P18-201ENST00000406327 PPP1R37O75864 691 aa9.75□□□□□ -0.85
HMGB3P18-201ENST00000406327 PDE4AP27815 886 aa9.74□□□□□ -0.85
HMGB3P18-201ENST00000406327 ILDR1Q86SU0 546 aaPredicted RBP9.74□□□□□ -0.85
HMGB3P18-201ENST00000406327 G3V3G9 751 aa9.72□□□□□ -0.85
HMGB3P18-201ENST00000406327 TMEM132AQ24JP5 1023 aa9.72□□□□□ -0.85
HMGB3P18-201ENST00000406327 SMYD5Q6GMV2 418 aa9.72□□□□□ -0.85
HMGB3P18-201ENST00000406327 HOXB3P14651 431 aaPredicted RBP9.71□□□□□ -0.86
HMGB3P18-201ENST00000406327 ZNF710Q8N1W2 664 aa9.7□□□□□ -0.86
HMGB3P18-201ENST00000406327 HOXB1P14653 301 aaPredicted RBP9.69□□□□□ -0.86
HMGB3P18-201ENST00000406327 DPY19L2Q6NUT2 758 aa9.69□□□□□ -0.86
HMGB3P18-201ENST00000406327 BOLA1Q9Y3E2 137 aa9.69□□□□□ -0.86
HMGB3P18-201ENST00000406327 ERBB3P21860 1342 aa9.68□□□□□ -0.86
HMGB3P18-201ENST00000406327 MFSD10Q14728 455 aa9.68□□□□□ -0.86
HMGB3P18-201ENST00000406327 LARP6Q9BRS8 491 aaKnown RBP9.68□□□□□ -0.86
HMGB3P18-201ENST00000406327 TESPA1A2RU30 521 aaPredicted RBP9.67□□□□□ -0.86
HMGB3P18-201ENST00000406327 DOK7Q18PE1 504 aa9.67□□□□□ -0.86
HMGB3P18-201ENST00000406327 RNF166Q96A37 237 aaPredicted RBP9.67□□□□□ -0.86
HMGB3P18-201ENST00000406327 DDX27Q96GQ7 796 aaKnown RBP9.67□□□□□ -0.86
HMGB3P18-201ENST00000406327 ARIH1Q9Y4X5 557 aaPredicted RBP9.66□□□□□ -0.86
HMGB3P18-201ENST00000406327 GTF3C3Q9Y5Q9 886 aa9.66□□□□□ -0.86
HMGB3P18-201ENST00000406327 NCKAP5LQ9HCH0 1330 aa9.65□□□□□ -0.86
HMGB3P18-201ENST00000406327 CRISPLD2Q9H0B8 497 aa9.65□□□□□ -0.86
HMGB3P18-201ENST00000406327 MS4A4AQ96JQ5 239 aa9.64□□□□□ -0.87
HMGB3P18-201ENST00000406327 SEMA3EO15041 775 aa9.63□□□□□ -0.87
HMGB3P18-201ENST00000406327 RIMBP2O15034 1052 aa9.62□□□□□ -0.87
HMGB3P18-201ENST00000406327 ZC3H15Q8WU90 426 aaKnown RBP9.62□□□□□ -0.87
HMGB3P18-201ENST00000406327 MYT1LQ9UL68 1186 aa9.6□□□□□ -0.87
HMGB3P18-201ENST00000406327 CAMK2BQ13554 666 aa9.59□□□□□ -0.87
HMGB3P18-201ENST00000406327 VARS2Q5ST30 1063 aaKnown RBP9.59□□□□□ -0.87
HMGB3P18-201ENST00000406327 PPP1R15BQ5SWA1 713 aa9.54□□□□□ -0.88
HMGB3P18-201ENST00000406327 ZNF687Q8N1G0 1237 aa9.54□□□□□ -0.88
HMGB3P18-201ENST00000406327 ZSWIM6Q9HCJ5 1215 aa9.54□□□□□ -0.88
HMGB3P18-201ENST00000406327 GPHNQ9NQX3 736 aaPredicted RBP9.54□□□□□ -0.88
HMGB3P18-201ENST00000406327 PTGER2P43116 358 aa9.53□□□□□ -0.88
HMGB3P18-201ENST00000406327 BRPF1P55201 1214 aaPredicted RBP9.53□□□□□ -0.88
HMGB3P18-201ENST00000406327 DAXXQ9UER7 740 aaPredicted RBP9.53□□□□□ -0.88
HMGB3P18-201ENST00000406327 TIMELESSQ9UNS1 1208 aa9.53□□□□□ -0.88
HMGB3P18-201ENST00000406327 ZMYND10O75800 440 aa9.52□□□□□ -0.89
HMGB3P18-201ENST00000406327 NEUROD2Q15784 382 aa9.51□□□□□ -0.89
HMGB3P18-201ENST00000406327 SPDYE16A6NNV3 312 aaPredicted RBP9.5□□□□□ -0.89
HMGB3P18-201ENST00000406327 SLC24A3Q9HC58 644 aa9.5□□□□□ -0.89
HMGB3P18-201ENST00000406327 TMC2Q8TDI7 906 aa9.49□□□□□ -0.89
HMGB3P18-201ENST00000406327 GPIHBP1Q8IV16 184 aa9.48□□□□□ -0.89
HMGB3P18-201ENST00000406327 GPR153Q6NV75 609 aa9.47□□□□□ -0.89
HMGB3P18-201ENST00000406327 BARGINQ6ZT62 677 aa9.47□□□□□ -0.89
HMGB3P18-201ENST00000406327 MICALL2Q8IY33 904 aa9.45□□□□□ -0.9
HMGB3P18-201ENST00000406327 PDIA6Q15084 440 aa9.44□□□□□ -0.9
HMGB3P18-201ENST00000406327 TMEM92Q6UXU6 159 aa9.44□□□□□ -0.9
HMGB3P18-201ENST00000406327 FOXK1P85037 733 aa9.43□□□□□ -0.9
HMGB3P18-201ENST00000406327 C14orf37Q86TY3 774 aa9.43□□□□□ -0.9
HMGB3P18-201ENST00000406327 AK7Q96M32 723 aa9.43□□□□□ -0.9
HMGB3P18-201ENST00000406327 DPYSL4O14531 572 aa9.42□□□□□ -0.9
HMGB3P18-201ENST00000406327 ANKRD13DQ6ZTN6 518 aa9.42□□□□□ -0.9
HMGB3P18-201ENST00000406327 DSG2Q14126 1118 aa9.41□□□□□ -0.9
HMGB3P18-201ENST00000406327 KRI1Q8N9T8 703 aaKnown RBP9.41□□□□□ -0.9
HMGB3P18-201ENST00000406327 MLLT3P42568 568 aaPredicted RBP9.4□□□□□ -0.9
HMGB3P18-201ENST00000406327 RBM26Q5T8P6 1007 aaKnown RBP9.4□□□□□ -0.9
HMGB3P18-201ENST00000406327 ARSIQ5FYB1 569 aa9.38□□□□□ -0.91
HMGB3P18-201ENST00000406327 EMILIN3Q9NT22 766 aa9.38□□□□□ -0.91
HMGB3P18-201ENST00000406327 ZNF316A6NFI3 1004 aaPredicted RBP9.36□□□□□ -0.91
HMGB3P18-201ENST00000406327 LSM11P83369 360 aaKnown RBP eCLIP9.36□□□□□ -0.91
HMGB3P18-201ENST00000406327 PLPP6Q8IY26 295 aa9.36□□□□□ -0.91
HMGB3P18-201ENST00000406327 MAP3K9P80192 1104 aa9.34□□□□□ -0.91
HMGB3P18-201ENST00000406327 C2orf72A6NCS6 295 aa9.32□□□□□ -0.92
HMGB3P18-201ENST00000406327 KIF3CO14782 793 aa9.31□□□□□ -0.92
HMGB3P18-201ENST00000406327 KHSRPQ92945 711 aaKnown RBP eCLIP9.31□□□□□ -0.92
HMGB3P18-201ENST00000406327 ARXQ96QS3 562 aa9.3□□□□□ -0.92
HMGB3P18-201ENST00000406327 PLA2G2EQ9NZK7 142 aa9.3□□□□□ -0.92
HMGB3P18-201ENST00000406327 PBX2P40425 430 aa9.29□□□□□ -0.92
HMGB3P18-201ENST00000406327 TRIM66O15016 1216 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms