RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TCOF1Q13428 1488 aaKnown RBP5.52□□□□□ -1.53
RTN4-208ENST00000404909 TTC37Q6PGP7 1564 aa5.52□□□□□ -1.53
RTN4-208ENST00000404909 CAMSAP2Q08AD1 1489 aa5.51□□□□□ -1.53
RTN4-208ENST00000404909 ARHGAP5Q13017 1502 aa5.51□□□□□ -1.53
RTN4-208ENST00000404909 ITSN2Q9NZM3 1697 aa5.51□□□□□ -1.53
RTN4-208ENST00000404909 SETD5Q9C0A6 1442 aa5.51□□□□□ -1.53
RTN4-208ENST00000404909 RAB3GAP2Q9H2M9 1393 aa5.51□□□□□ -1.53
RTN4-208ENST00000404909 EFCAB2Q5VUJ9 269 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 CDC42BPAQ5VT25 1732 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 DAPK1P53355 1430 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 TSPY4P0CV99 314 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 TSPY10P0CW01 314 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 ABCC5O15440 1437 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 PLCH2O75038 1416 aa5.5□□□□□ -1.53
RTN4-208ENST00000404909 PREX2Q70Z35 1606 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 FAM69CQ0P6D2 419 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 CDC42BPBQ9Y5S2 1711 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 HFM1A2PYH4 1435 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 CD109Q6YHK3 1445 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 MYO5CQ9NQX4 1742 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 NAIPQ13075 1403 aa5.48□□□□□ -1.53
RTN4-208ENST00000404909 TRIM52Q96A61 297 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 MYT1LQ9UL68 1186 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 DNMT1P26358 1616 aaKnown RBP5.47□□□□□ -1.53
RTN4-208ENST00000404909 SAMD9LQ8IVG5 1584 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 AFAP1Q8N556 730 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 SYCP2Q9BX26 1530 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 FANCAO15360 1455 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 ZEB1P37275 1124 aaPredicted RBP5.47□□□□□ -1.53
RTN4-208ENST00000404909 RSPH4AQ5TD94 716 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 AKNAQ7Z591 1439 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 MBD5Q9P267 1494 aa5.47□□□□□ -1.53
RTN4-208ENST00000404909 DHX57Q6P158 1386 aaKnown RBP5.47□□□□□ -1.53
RTN4-208ENST00000404909 C9orf84Q5VXU9 1444 aa5.46□□□□□ -1.53
RTN4-208ENST00000404909 MAPKBP1O60336 1514 aa5.46□□□□□ -1.53
RTN4-208ENST00000404909 ANKRD30AQ9BXX3 1397 aa5.46□□□□□ -1.53
RTN4-208ENST00000404909 ABCA9Q8IUA7 1624 aa5.46□□□□□ -1.54
RTN4-208ENST00000404909 CCDC141Q6ZP82 1450 aa5.46□□□□□ -1.54
RTN4-208ENST00000404909 PLEKHH2Q8IVE3 1493 aa5.46□□□□□ -1.54
RTN4-208ENST00000404909 ROCK1Q13464 1354 aa5.46□□□□□ -1.54
RTN4-208ENST00000404909 NCOA1Q15788 1441 aa5.46□□□□□ -1.54
RTN4-208ENST00000404909 ARHGEF12Q9NZN5 1544 aa5.46□□□□□ -1.54
RTN4-208ENST00000404909 KIAA1107Q9UPP5 1409 aa5.45□□□□□ -1.54
RTN4-208ENST00000404909 SCAPERQ9BY12 1400 aa5.45□□□□□ -1.54
RTN4-208ENST00000404909 TRAPPC8Q9Y2L5 1435 aa5.45□□□□□ -1.54
RTN4-208ENST00000404909 ADGRL1O94910 1474 aa5.45□□□□□ -1.54
RTN4-208ENST00000404909 SPAG9O60271 1321 aaKnown RBP5.45□□□□□ -1.54
RTN4-208ENST00000404909 DNAJC5Q9H3Z4 198 aa5.44□□□□□ -1.54
RTN4-208ENST00000404909 KIF15Q9NS87 1388 aa5.44□□□□□ -1.54
RTN4-208ENST00000404909 ARHGEF5Q12774 1597 aa5.44□□□□□ -1.54
RTN4-208ENST00000404909 ABCC1P33527 1531 aa5.44□□□□□ -1.54
RTN4-208ENST00000404909 ARAP3Q8WWN8 1544 aa5.44□□□□□ -1.54
RTN4-208ENST00000404909 SHANK2Q9UPX8 1470 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 ANKRD50Q9ULJ7 1429 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 RAPGEF3O95398 923 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 KDM6BO15054 1643 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 ADGRL2O95490 1459 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 NEUROD1Q13562 356 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 CROCC2H7BZ55 1655 aa5.43□□□□□ -1.54
RTN4-208ENST00000404909 TRHP20396 242 aaPredicted RBP5.42□□□□□ -1.54
RTN4-208ENST00000404909 FOXD1Q16676 465 aa5.42□□□□□ -1.54
RTN4-208ENST00000404909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.42□□□□□ -1.54
RTN4-208ENST00000404909 SLC4A1APQ9BWU0 796 aaKnown RBP5.42□□□□□ -1.54
RTN4-208ENST00000404909 GCC2Q8IWJ2 1684 aa5.42□□□□□ -1.54
RTN4-208ENST00000404909 MPHOSPH9Q99550 1183 aa5.42□□□□□ -1.54
RTN4-208ENST00000404909 DIP2BQ9P265 1576 aa5.42□□□□□ -1.54
RTN4-208ENST00000404909 CLSPNQ9HAW4 1339 aa5.42□□□□□ -1.54
RTN4-208ENST00000404909 SIN3AQ96ST3 1273 aa5.42□□□□□ -1.54
RTN4-208ENST00000404909 ADGBQ8N7X0 1667 aa5.41□□□□□ -1.54
RTN4-208ENST00000404909 TSPOAP1O95153 1857 aa5.41□□□□□ -1.54
RTN4-208ENST00000404909 NUP155O75694 1391 aa5.41□□□□□ -1.54
RTN4-208ENST00000404909 GLI2P10070 1586 aa5.41□□□□□ -1.54
RTN4-208ENST00000404909 NEO1Q92859 1461 aa5.41□□□□□ -1.54
RTN4-208ENST00000404909 ZNF518AQ6AHZ1 1483 aa5.4□□□□□ -1.54
RTN4-208ENST00000404909 MAP3K4Q9Y6R4 1608 aa5.4□□□□□ -1.54
RTN4-208ENST00000404909 DENND4BO75064 1496 aaPredicted RBP5.4□□□□□ -1.55
RTN4-208ENST00000404909 POGZQ7Z3K3 1410 aa5.4□□□□□ -1.55
RTN4-208ENST00000404909 CFAP74Q9C0B2 1584 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 RTEL1-TNFRSF6BF6WH68 1400 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 ACIN1Q9UKV3 1341 aaKnown RBP5.39□□□□□ -1.55
RTN4-208ENST00000404909 MAST1Q9Y2H9 1570 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 KIF3BO15066 747 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 PKD2Q13563 968 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 ATP7AQ04656 1500 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 ZFYVE16Q7Z3T8 1539 aa5.39□□□□□ -1.55
RTN4-208ENST00000404909 TEX14Q8IWB6 1497 aa5.38□□□□□ -1.55
RTN4-208ENST00000404909 DUOX2Q9NRD8 1548 aa5.38□□□□□ -1.55
RTN4-208ENST00000404909 PLXNC1O60486 1568 aa5.38□□□□□ -1.55
RTN4-208ENST00000404909 ERBINQ96RT1 1412 aa5.37□□□□□ -1.55
RTN4-208ENST00000404909 KIF13AQ9H1H9 1805 aa5.37□□□□□ -1.55
RTN4-208ENST00000404909 PZPP20742 1482 aa5.37□□□□□ -1.55
RTN4-208ENST00000404909 GGT6Q6P531 493 aa5.37□□□□□ -1.55
RTN4-208ENST00000404909 DHX29Q7Z478 1369 aaKnown RBP5.37□□□□□ -1.55
RTN4-208ENST00000404909 INO80Q9ULG1 1556 aaPredicted RBP5.37□□□□□ -1.55
RTN4-208ENST00000404909 MLH3Q9UHC1 1453 aa5.36□□□□□ -1.55
RTN4-208ENST00000404909 KDM5CP41229 1560 aa5.36□□□□□ -1.55
RTN4-208ENST00000404909 TONSLQ96HA7 1378 aa5.36□□□□□ -1.55
RTN4-208ENST00000404909 KIDINS220Q9ULH0 1771 aa5.36□□□□□ -1.55
RTN4-208ENST00000404909 PPRC1Q5VV67 1664 aaKnown RBP5.36□□□□□ -1.55
RTN4-208ENST00000404909 A2MP01023 1474 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms