RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 EFCAB2Q5VUJ9 269 aa27.55■■■□□ 2
SDC1-203ENST00000403076 ARHGAP5Q13017 1502 aa27.55■■■□□ 2
SDC1-203ENST00000403076 PREX2Q70Z35 1606 aa27.54■■■□□ 2
SDC1-203ENST00000403076 RRBP1Q9P2E9 1410 aaKnown RBP27.53■■■□□ 2
SDC1-203ENST00000403076 CDC42BPBQ9Y5S2 1711 aa27.51■■□□□ 1.99
SDC1-203ENST00000403076 ZNF644Q9H582 1327 aaPredicted RBP27.49■■□□□ 1.99
SDC1-203ENST00000403076 PTPN23Q9H3S7 1636 aa27.49■■□□□ 1.99
SDC1-203ENST00000403076 MAP3K4Q9Y6R4 1608 aa27.49■■□□□ 1.99
SDC1-203ENST00000403076 KIF13AQ9H1H9 1805 aa27.48■■□□□ 1.99
SDC1-203ENST00000403076 ARAP3Q8WWN8 1544 aa27.48■■□□□ 1.99
SDC1-203ENST00000403076 FANCAO15360 1455 aa27.46■■□□□ 1.99
SDC1-203ENST00000403076 CAMSAP2Q08AD1 1489 aa27.43■■□□□ 1.98
SDC1-203ENST00000403076 TCOF1Q13428 1488 aaKnown RBP27.43■■□□□ 1.98
SDC1-203ENST00000403076 ITGAEP38570 1179 aa27.42■■□□□ 1.98
SDC1-203ENST00000403076 TSPOAP1O95153 1857 aa27.41■■□□□ 1.98
SDC1-203ENST00000403076 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.41■■□□□ 1.989e-6■■■■□ 19.8
SDC1-203ENST00000403076 SAMD9LQ8IVG5 1584 aa27.39■■□□□ 1.98
SDC1-203ENST00000403076 HNRNPMP52272 730 aaKnown RBP eCLIP27.39■■□□□ 1.98
SDC1-203ENST00000403076 PLEKHH2Q8IVE3 1493 aa27.38■■□□□ 1.97
SDC1-203ENST00000403076 AKNAQ7Z591 1439 aa27.38■■□□□ 1.97
SDC1-203ENST00000403076 TEX14Q8IWB6 1497 aa27.38■■□□□ 1.97
SDC1-203ENST00000403076 CFAP74Q9C0B2 1584 aa27.37■■□□□ 1.97
SDC1-203ENST00000403076 PCGF6Q9BYE7 350 aa27.36■■□□□ 1.97
SDC1-203ENST00000403076 NEO1Q92859 1461 aa27.35■■□□□ 1.97
SDC1-203ENST00000403076 ADGRL1O94910 1474 aa27.33■■□□□ 1.97
SDC1-203ENST00000403076 KIAA1107Q9UPP5 1409 aa27.33■■□□□ 1.97
SDC1-203ENST00000403076 SCAPERQ9BY12 1400 aa27.32■■□□□ 1.96
SDC1-203ENST00000403076 SYCP2Q9BX26 1530 aa27.31■■□□□ 1.96
SDC1-203ENST00000403076 PPRC1Q5VV67 1664 aaKnown RBP27.31■■□□□ 1.96
SDC1-203ENST00000403076 RSPH4AQ5TD94 716 aa27.31■■□□□ 1.96
SDC1-203ENST00000403076 ABCC1P33527 1531 aa27.3■■□□□ 1.96
SDC1-203ENST00000403076 ARHGEF12Q9NZN5 1544 aa27.28■■□□□ 1.96
SDC1-203ENST00000403076 MBD5Q9P267 1494 aa27.27■■□□□ 1.96
SDC1-203ENST00000403076 DAPK1P53355 1430 aa27.27■■□□□ 1.96
SDC1-203ENST00000403076 TSPY4P0CV99 314 aa27.26■■□□□ 1.96
SDC1-203ENST00000403076 TSPY10P0CW01 314 aa27.26■■□□□ 1.96
SDC1-203ENST00000403076 ABCC5O15440 1437 aa27.26■■□□□ 1.95
SDC1-203ENST00000403076 DNMT1P26358 1616 aaKnown RBP27.25■■□□□ 1.95
SDC1-203ENST00000403076 CHIC2Q9UKJ5 165 aa27.25■■□□□ 1.95
SDC1-203ENST00000403076 CCDC141Q6ZP82 1450 aa27.25■■□□□ 1.95
SDC1-203ENST00000403076 ARHGEF5Q12774 1597 aa27.24■■□□□ 1.95
SDC1-203ENST00000403076 AFAP1Q8N556 730 aa27.23■■□□□ 1.95
SDC1-203ENST00000403076 TRAPPC8Q9Y2L5 1435 aa27.23■■□□□ 1.95
SDC1-203ENST00000403076 DENND4BO75064 1496 aaPredicted RBP27.22■■□□□ 1.95
SDC1-203ENST00000403076 PTPRKQ15262 1439 aa27.2■■□□□ 1.94
SDC1-203ENST00000403076 RAPGEF3O95398 923 aa27.19■■□□□ 1.94
SDC1-203ENST00000403076 MYT1LQ9UL68 1186 aa27.19■■□□□ 1.94
SDC1-203ENST00000403076 POGZQ7Z3K3 1410 aa27.16■■□□□ 1.94
SDC1-203ENST00000403076 SPAG9O60271 1321 aaKnown RBP27.16■■□□□ 1.94
SDC1-203ENST00000403076 ZNF518AQ6AHZ1 1483 aa27.16■■□□□ 1.94
SDC1-203ENST00000403076 C9orf84Q5VXU9 1444 aa27.15■■□□□ 1.94
SDC1-203ENST00000403076 SHANK2Q9UPX8 1470 aa27.14■■□□□ 1.93
SDC1-203ENST00000403076 CROCC2H7BZ55 1655 aa27.14■■□□□ 1.93
SDC1-203ENST00000403076 RRP7BPQ9NSQ0 103 aa27.12■■□□□ 1.93
SDC1-203ENST00000403076 ANKRD30AQ9BXX3 1397 aa27.1■■□□□ 1.93
SDC1-203ENST00000403076 ROCK1Q13464 1354 aa27.08■■□□□ 1.93
SDC1-203ENST00000403076 COL17A1Q9UMD9 1497 aaPredicted RBP27.07■■□□□ 1.92
SDC1-203ENST00000403076 MAST1Q9Y2H9 1570 aa27.07■■□□□ 1.92
SDC1-203ENST00000403076 RTEL1-TNFRSF6BF6WH68 1400 aa27.06■■□□□ 1.92
SDC1-203ENST00000403076 RICTORQ6R327 1708 aa27.05■■□□□ 1.92
SDC1-203ENST00000403076 NCOA1Q15788 1441 aa27.05■■□□□ 1.92
SDC1-203ENST00000403076 ADGBQ8N7X0 1667 aa27.05■■□□□ 1.92
SDC1-203ENST00000403076 KDM5CP41229 1560 aa27.05■■□□□ 1.92
SDC1-203ENST00000403076 ADGRL2O95490 1459 aa27.04■■□□□ 1.92
SDC1-203ENST00000403076 ATP7AQ04656 1500 aa27.02■■□□□ 1.92
SDC1-203ENST00000403076 FRMPD1Q5SYB0 1578 aa27.02■■□□□ 1.92
SDC1-203ENST00000403076 MLH3Q9UHC1 1453 aa27.01■■□□□ 1.92
SDC1-203ENST00000403076 KDM6BO15054 1643 aa27.01■■□□□ 1.91
SDC1-203ENST00000403076 ZFYVE16Q7Z3T8 1539 aa27.01■■□□□ 1.91
SDC1-203ENST00000403076 KIF15Q9NS87 1388 aa27■■□□□ 1.91
SDC1-203ENST00000403076 HECW2Q9P2P5 1572 aa27■■□□□ 1.91
SDC1-203ENST00000403076 INO80Q9ULG1 1556 aaPredicted RBP27■■□□□ 1.91
SDC1-203ENST00000403076 HFM1A2PYH4 1435 aa27■■□□□ 1.91
SDC1-203ENST00000403076 SETD5Q9C0A6 1442 aa26.99■■□□□ 1.91
SDC1-203ENST00000403076 NAIPQ13075 1403 aa26.98■■□□□ 1.91
SDC1-203ENST00000403076 ZMYM4Q5VZL5 1548 aa26.97■■□□□ 1.91
SDC1-203ENST00000403076 KIDINS220Q9ULH0 1771 aa26.96■■□□□ 1.91
SDC1-203ENST00000403076 PLXNC1O60486 1568 aa26.96■■□□□ 1.91
SDC1-203ENST00000403076 MAGI2Q86UL8 1455 aa26.94■■□□□ 1.9
SDC1-203ENST00000403076 YEATS2Q9ULM3 1422 aa26.92■■□□□ 1.9
SDC1-203ENST00000403076 RAB3GAP2Q9H2M9 1393 aa26.91■■□□□ 1.9
SDC1-203ENST00000403076 GCC2Q8IWJ2 1684 aa26.91■■□□□ 1.9
SDC1-203ENST00000403076 DUOX2Q9NRD8 1548 aa26.9■■□□□ 1.9
SDC1-203ENST00000403076 ANKRD50Q9ULJ7 1429 aa26.9■■□□□ 1.9
SDC1-203ENST00000403076 DHX29Q7Z478 1369 aaKnown RBP26.87■■□□□ 1.89
SDC1-203ENST00000403076 ABCA6Q8N139 1617 aa26.87■■□□□ 1.89
SDC1-203ENST00000403076 DIP2CQ9Y2E4 1556 aa26.86■■□□□ 1.89
SDC1-203ENST00000403076 A2MP01023 1474 aa26.86■■□□□ 1.89
SDC1-203ENST00000403076 ATP10AO60312 1499 aa26.84■■□□□ 1.89
SDC1-203ENST00000403076 ERBINQ96RT1 1412 aa26.83■■□□□ 1.89
SDC1-203ENST00000403076 HRCP23327 699 aa26.83■■□□□ 1.89
SDC1-203ENST00000403076 TRIM52Q96A61 297 aa26.82■■□□□ 1.88
SDC1-203ENST00000403076 ARHGEF40Q8TER5 1519 aa26.8■■□□□ 1.88
SDC1-203ENST00000403076 KIF3BO15066 747 aa26.8■■□□□ 1.88
SDC1-203ENST00000403076 ACIN1Q9UKV3 1341 aaKnown RBP26.78■■□□□ 1.88
SDC1-203ENST00000403076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.75■■□□□ 1.87
SDC1-203ENST00000403076 EIF2AK4Q9P2K8 1649 aaKnown RBP26.71■■□□□ 1.87
SDC1-203ENST00000403076 ARID4BQ4LE39 1312 aaPredicted RBP26.71■■□□□ 1.87
SDC1-203ENST00000403076 GGT6Q6P531 493 aa26.7■■□□□ 1.87
SDC1-203ENST00000403076 REREQ9P2R6 1566 aa26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms