RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KCNH8Q96L42 1107 aa15.09■□□□□ 0.01
VPS53-203ENST00000401468 RAPGEF6Q8TEU7 1601 aa15.08■□□□□ 0
VPS53-203ENST00000401468 WDR7Q9Y4E6 1490 aa15.08■□□□□ 0
VPS53-203ENST00000401468 CFAP43Q8NDM7 1665 aa15.07■□□□□ 0
VPS53-203ENST00000401468 MKRN4PQ13434 485 aaPredicted RBP15.06■□□□□ 0
VPS53-203ENST00000401468 LMTK3Q96Q04 1460 aa15.06■□□□□ 0
VPS53-203ENST00000401468 FHOD3Q2V2M9 1422 aa15.05■□□□□ -0
VPS53-203ENST00000401468 COL17A1Q9UMD9 1497 aaPredicted RBP15.05■□□□□ -0
VPS53-203ENST00000401468 ADGRL1O94910 1474 aa15.04■□□□□ -0
VPS53-203ENST00000401468 SPDYE2BA6NHP3 402 aa15.04■□□□□ -0
VPS53-203ENST00000401468 SPDYE6P0CI01 402 aa15.04■□□□□ -0
VPS53-203ENST00000401468 SPDYE2Q495Y8 402 aa15.04■□□□□ -0
VPS53-203ENST00000401468 ATP10BO94823 1461 aa15□□□□□ -0.01
VPS53-203ENST00000401468 LRRIQ1Q96JM4 1722 aa14.99□□□□□ -0.01
VPS53-203ENST00000401468 CD109Q6YHK3 1445 aa14.96□□□□□ -0.01
VPS53-203ENST00000401468 EFCAB5A4FU69 1503 aa14.96□□□□□ -0.02
VPS53-203ENST00000401468 NUP153P49790 1475 aaKnown RBP14.95□□□□□ -0.02
VPS53-203ENST00000401468 TEX14Q8IWB6 1497 aa14.95□□□□□ -0.02
VPS53-203ENST00000401468 SOCS7O14512 581 aa14.94□□□□□ -0.02
VPS53-203ENST00000401468 ABCA9Q8IUA7 1624 aa14.94□□□□□ -0.02
VPS53-203ENST00000401468 CDK13Q14004 1512 aaKnown RBP14.93□□□□□ -0.02
VPS53-203ENST00000401468 PITPNM1O00562 1244 aa14.93□□□□□ -0.02
VPS53-203ENST00000401468 UBTFP17480 764 aaKnown RBP14.93□□□□□ -0.02
VPS53-203ENST00000401468 ZNF692Q9BU19 519 aaPredicted RBP14.9□□□□□ -0.02
VPS53-203ENST00000401468 TTC37Q6PGP7 1564 aa14.9□□□□□ -0.02
VPS53-203ENST00000401468 MAGI3Q5TCQ9 1506 aa14.89□□□□□ -0.03
VPS53-203ENST00000401468 ARHGAP35Q9NRY4 1499 aa14.89□□□□□ -0.03
VPS53-203ENST00000401468 ATP1B4Q9UN42 357 aaPredicted RBP14.88□□□□□ -0.03
VPS53-203ENST00000401468 LOC105371045A0A1W2PR82 267 aa14.87□□□□□ -0.03
VPS53-203ENST00000401468 ILDR2Q71H61 639 aa14.87□□□□□ -0.03
VPS53-203ENST00000401468 FRMPD1Q5SYB0 1578 aa14.85□□□□□ -0.03
VPS53-203ENST00000401468 CEP162Q5TB80 1403 aa14.84□□□□□ -0.03
VPS53-203ENST00000401468 KIF14Q15058 1648 aa14.84□□□□□ -0.03
VPS53-203ENST00000401468 RICTORQ6R327 1708 aa14.83□□□□□ -0.03
VPS53-203ENST00000401468 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.83□□□□□ -0.04
VPS53-203ENST00000401468 PIP4P2Q8N4L2 257 aa14.83□□□□□ -0.04
VPS53-203ENST00000401468 SSUH2Q9Y2M2 353 aa14.83□□□□□ -0.04
VPS53-203ENST00000401468 HECW1Q76N89 1606 aa14.83□□□□□ -0.04
VPS53-203ENST00000401468 MYO5CQ9NQX4 1742 aa14.83□□□□□ -0.04
VPS53-203ENST00000401468 CLIP1P30622 1438 aa14.83□□□□□ -0.04
VPS53-203ENST00000401468 SIGLEC1Q9BZZ2 1709 aa14.81□□□□□ -0.04
VPS53-203ENST00000401468 RAPGEF3O95398 923 aa14.81□□□□□ -0.04
VPS53-203ENST00000401468 PCF11O94913 1555 aaKnown RBP14.81□□□□□ -0.04
VPS53-203ENST00000401468 ARAP3Q8WWN8 1544 aa14.78□□□□□ -0.04
VPS53-203ENST00000401468 PLEKHD1A6NEE1 506 aa14.76□□□□□ -0.05
VPS53-203ENST00000401468 SPDYE1Q8NFV5 336 aaPredicted RBP14.76□□□□□ -0.05
VPS53-203ENST00000401468 CLEC11AQ9Y240 323 aa14.76□□□□□ -0.05
VPS53-203ENST00000401468 CDC42BPBQ9Y5S2 1711 aa14.75□□□□□ -0.05
VPS53-203ENST00000401468 FXR2P51116 673 aaKnown RBP eCLIP14.75□□□□□ -0.05
VPS53-203ENST00000401468 CFAP74Q9C0B2 1584 aa14.75□□□□□ -0.05
VPS53-203ENST00000401468 FMN1Q68DA7 1419 aa14.75□□□□□ -0.05
VPS53-203ENST00000401468 RIMS1Q86UR5 1692 aaKnown RBP14.74□□□□□ -0.05
VPS53-203ENST00000401468 BCORL1Q5H9F3 1711 aa14.73□□□□□ -0.05
VPS53-203ENST00000401468 FANCAO15360 1455 aa14.73□□□□□ -0.05
VPS53-203ENST00000401468 NEO1Q92859 1461 aa14.73□□□□□ -0.05
VPS53-203ENST00000401468 MADDQ8WXG6 1647 aa14.73□□□□□ -0.05
VPS53-203ENST00000401468 DISP3Q9P2K9 1392 aa14.73□□□□□ -0.05
VPS53-203ENST00000401468 CDC42BPAQ5VT25 1732 aa14.72□□□□□ -0.05
VPS53-203ENST00000401468 ADAMTSL3P82987 1691 aa14.71□□□□□ -0.05
VPS53-203ENST00000401468 ARHGEF40Q8TER5 1519 aa14.71□□□□□ -0.06
VPS53-203ENST00000401468 AKNAQ7Z591 1439 aa14.7□□□□□ -0.06
VPS53-203ENST00000401468 FYCO1Q9BQS8 1478 aa14.69□□□□□ -0.06
VPS53-203ENST00000401468 CASKIN1Q8WXD9 1431 aa14.69□□□□□ -0.06
VPS53-203ENST00000401468 FER1L4A9Z1Z3 1794 aa14.68□□□□□ -0.06
VPS53-203ENST00000401468 ARID4BQ4LE39 1312 aaPredicted RBP14.67□□□□□ -0.06
VPS53-203ENST00000401468 VPS8Q8N3P4 1428 aa14.67□□□□□ -0.06
VPS53-203ENST00000401468 DENND4BO75064 1496 aaPredicted RBP14.67□□□□□ -0.06
VPS53-203ENST00000401468 ARHGAP5Q13017 1502 aa14.66□□□□□ -0.06
VPS53-203ENST00000401468 YEATS2Q9ULM3 1422 aa14.66□□□□□ -0.06
VPS53-203ENST00000401468 PREX2Q70Z35 1606 aa14.65□□□□□ -0.06
VPS53-203ENST00000401468 ZFYVE16Q7Z3T8 1539 aa14.65□□□□□ -0.06
VPS53-203ENST00000401468 ITSN2Q9NZM3 1697 aa14.64□□□□□ -0.07
VPS53-203ENST00000401468 TROQ12816 1431 aaPredicted RBP14.63□□□□□ -0.07
VPS53-203ENST00000401468 SPATA31D1Q6ZQQ2 1576 aa14.63□□□□□ -0.07
VPS53-203ENST00000401468 ZMYM4Q5VZL5 1548 aa14.62□□□□□ -0.07
VPS53-203ENST00000401468 SCAPERQ9BY12 1400 aa14.62□□□□□ -0.07
VPS53-203ENST00000401468 PLCH2O75038 1416 aa14.61□□□□□ -0.07
VPS53-203ENST00000401468 MLECQ14165 292 aa14.61□□□□□ -0.07
VPS53-203ENST00000401468 CCDC18Q5T9S5 1454 aa14.61□□□□□ -0.07
VPS53-203ENST00000401468 PHLDB1Q86UU1 1377 aa14.6□□□□□ -0.07
VPS53-203ENST00000401468 PTPRMP28827 1452 aa14.6□□□□□ -0.07
VPS53-203ENST00000401468 MAP3K1Q13233 1512 aa14.6□□□□□ -0.07
VPS53-203ENST00000401468 POGZQ7Z3K3 1410 aa14.59□□□□□ -0.07
VPS53-203ENST00000401468 ABCA6Q8N139 1617 aa14.59□□□□□ -0.07
VPS53-203ENST00000401468 HAX1O00165 279 aa14.57□□□□□ -0.08
VPS53-203ENST00000401468 PRKAR2AP13861 404 aaKnown RBP14.57□□□□□ -0.08
VPS53-203ENST00000401468 TIAM1Q13009 1591 aa14.56□□□□□ -0.08
VPS53-203ENST00000401468 MYT1LQ9UL68 1186 aa14.56□□□□□ -0.08
VPS53-203ENST00000401468 CDK11AQ9UQ88 783 aaPredicted RBP14.56□□□□□ -0.08
VPS53-203ENST00000401468 ARHGEF12Q9NZN5 1544 aa14.56□□□□□ -0.08
VPS53-203ENST00000401468 SAMD9LQ8IVG5 1584 aa14.56□□□□□ -0.08
VPS53-203ENST00000401468 ABCC1P33527 1531 aa14.55□□□□□ -0.08
VPS53-203ENST00000401468 DIP2CQ9Y2E4 1556 aa14.55□□□□□ -0.08
VPS53-203ENST00000401468 SUPT6HQ7KZ85 1726 aaKnown RBP14.55□□□□□ -0.08
VPS53-203ENST00000401468 KIDINS220Q9ULH0 1771 aa14.55□□□□□ -0.08
VPS53-203ENST00000401468 AFAP1Q8N556 730 aa14.54□□□□□ -0.08
VPS53-203ENST00000401468 EFCAB2Q5VUJ9 269 aa14.53□□□□□ -0.08
VPS53-203ENST00000401468 ZNF777Q9ULD5 760 aaPredicted RBP14.53□□□□□ -0.08
VPS53-203ENST00000401468 KDM5CP41229 1560 aa14.52□□□□□ -0.08
VPS53-203ENST00000401468 SYCP2Q9BX26 1530 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms