RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 TONSLQ96HA7 1378 aa23.39■■□□□ 1.34
PTPRA-205ENST00000399903 EIF4G3O43432 1585 aaKnown RBP23.39■■□□□ 1.33
PTPRA-205ENST00000399903 CCDC18Q5T9S5 1454 aa23.36■■□□□ 1.33
PTPRA-205ENST00000399903 GRIN2AQ12879 1464 aa23.36■■□□□ 1.33
PTPRA-205ENST00000399903 IL27Q8NEV9 243 aa23.36■■□□□ 1.33
PTPRA-205ENST00000399903 THOC2Q8NI27 1593 aaKnown RBP23.35■■□□□ 1.33
PTPRA-205ENST00000399903 NPM2Q86SE8 214 aaKnown RBP23.35■■□□□ 1.33
PTPRA-205ENST00000399903 JPH4Q96JJ6 628 aa23.34■■□□□ 1.33
PTPRA-205ENST00000399903 CCDC184Q52MB2 194 aa23.33■■□□□ 1.33
PTPRA-205ENST00000399903 ANP32AP39687 249 aaKnown RBP23.33■■□□□ 1.32
PTPRA-205ENST00000399903 DISP1Q96F81 1524 aa23.32■■□□□ 1.32
PTPRA-205ENST00000399903 KIAA0586Q9BVV6 1533 aa23.32■■□□□ 1.32
PTPRA-205ENST00000399903 EHBP1L1Q8N3D4 1523 aa23.32■■□□□ 1.32
PTPRA-205ENST00000399903 SUPT6HQ7KZ85 1726 aaKnown RBP23.31■■□□□ 1.32
PTPRA-205ENST00000399903 NAIPQ13075 1403 aa23.31■■□□□ 1.32
PTPRA-205ENST00000399903 ZBTB47Q9UFB7 747 aaPredicted RBP23.3■■□□□ 1.32
PTPRA-205ENST00000399903 PLB1Q6P1J6 1458 aa23.29■■□□□ 1.32
PTPRA-205ENST00000399903 UGGT2Q9NYU1 1516 aa23.28■■□□□ 1.32
PTPRA-205ENST00000399903 HECW1Q76N89 1606 aa23.28■■□□□ 1.32
PTPRA-205ENST00000399903 PTPN23Q9H3S7 1636 aa23.27■■□□□ 1.32
PTPRA-205ENST00000399903 HFM1A2PYH4 1435 aa23.27■■□□□ 1.31
PTPRA-205ENST00000399903 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.31
PTPRA-205ENST00000399903 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.27■■□□□ 1.31
PTPRA-205ENST00000399903 MRS2Q9HD23 443 aa23.26■■□□□ 1.31
PTPRA-205ENST00000399903 NUP153P49790 1475 aaKnown RBP23.24■■□□□ 1.31
PTPRA-205ENST00000399903 LAS1LQ9Y4W2 734 aaKnown RBP23.22■■□□□ 1.31
PTPRA-205ENST00000399903 KIAA0556O60303 1618 aa23.22■■□□□ 1.31
PTPRA-205ENST00000399903 CEP170Q5SW79 1584 aa23.21■■□□□ 1.31
PTPRA-205ENST00000399903 POLR3GLQ9BT43 218 aa23.2■■□□□ 1.3
PTPRA-205ENST00000399903 CFDP1Q9UEE9 299 aaPredicted RBP23.2■■□□□ 1.3
PTPRA-205ENST00000399903 SYNJ2O15056 1496 aa23.19■■□□□ 1.3
PTPRA-205ENST00000399903 UACAQ9BZF9 1416 aa23.18■■□□□ 1.3
PTPRA-205ENST00000399903 TIMELESSQ9UNS1 1208 aa23.17■■□□□ 1.3
PTPRA-205ENST00000399903 KDM6BO15054 1643 aa23.16■■□□□ 1.3
PTPRA-205ENST00000399903 IPO9Q96P70 1041 aaKnown RBP23.16■■□□□ 1.3
PTPRA-205ENST00000399903 MAGI1Q96QZ7 1491 aaPredicted RBP23.15■■□□□ 1.3
PTPRA-205ENST00000399903 HSPA5P11021 654 aaKnown RBP23.15■■□□□ 1.3
PTPRA-205ENST00000399903 MPHOSPH9Q99550 1183 aa23.15■■□□□ 1.3
PTPRA-205ENST00000399903 ARHGEF11O15085 1522 aa23.15■■□□□ 1.3
PTPRA-205ENST00000399903 ERICH6BQ5W0A0 696 aa23.14■■□□□ 1.3
PTPRA-205ENST00000399903 EIF5BO60841 1220 aaKnown RBP23.13■■□□□ 1.29
PTPRA-205ENST00000399903 WASHC2AQ641Q2 1341 aa23.11■■□□□ 1.29
PTPRA-205ENST00000399903 RAPGEF6Q8TEU7 1601 aa23.09■■□□□ 1.29
PTPRA-205ENST00000399903 NEFMP07197 916 aa23.09■■□□□ 1.29
PTPRA-205ENST00000399903 PLEKHD1A6NEE1 506 aa23.08■■□□□ 1.29
PTPRA-205ENST00000399903 SLC4A1APQ9BWU0 796 aaKnown RBP23.08■■□□□ 1.29
PTPRA-205ENST00000399903 CARMIL2Q6F5E8 1435 aa23.08■■□□□ 1.29
PTPRA-205ENST00000399903 ABCC5O15440 1437 aa23.06■■□□□ 1.28
PTPRA-205ENST00000399903 TCOF1Q13428 1488 aaKnown RBP23.05■■□□□ 1.28
PTPRA-205ENST00000399903 DAPK1P53355 1430 aa23.05■■□□□ 1.28
PTPRA-205ENST00000399903 MIA2Q96PC5 1412 aa23.04■■□□□ 1.28
PTPRA-205ENST00000399903 L3MBTL2Q969R5 705 aa23.03■■□□□ 1.28
PTPRA-205ENST00000399903 EIF4G2P78344 907 aaKnown RBP eCLIP23.02■■□□□ 1.28
PTPRA-205ENST00000399903 ZNF326Q5BKZ1 582 aaKnown RBP23.02■■□□□ 1.28
PTPRA-205ENST00000399903 NUP160Q12769 1436 aa23.02■■□□□ 1.28
PTPRA-205ENST00000399903 TROQ12816 1431 aaPredicted RBP23.02■■□□□ 1.28
PTPRA-205ENST00000399903 DENND4BO75064 1496 aaPredicted RBP23.02■■□□□ 1.28
PTPRA-205ENST00000399903 AKNAQ7Z591 1439 aa23.01■■□□□ 1.27
PTPRA-205ENST00000399903 HNRNPMP52272 730 aaKnown RBP eCLIP23■■□□□ 1.274e-7■■■■■ 28.7
PTPRA-205ENST00000399903 PRKRIP1Q9H875 184 aaPredicted RBP23■■□□□ 1.27
PTPRA-205ENST00000399903 KIF14Q15058 1648 aa23■■□□□ 1.27
PTPRA-205ENST00000399903 ZBED9Q6R2W3 1325 aa22.97■■□□□ 1.27
PTPRA-205ENST00000399903 PTPRGP23470 1445 aa22.96■■□□□ 1.27
PTPRA-205ENST00000399903 GPATCH8Q9UKJ3 1502 aaKnown RBP22.95■■□□□ 1.26
PTPRA-205ENST00000399903 C11orf95C9JLR9 678 aaPredicted RBP22.94■■□□□ 1.26
PTPRA-205ENST00000399903 CAMSAP2Q08AD1 1489 aa22.93■■□□□ 1.26
PTPRA-205ENST00000399903 ATP10BO94823 1461 aa22.93■■□□□ 1.26
PTPRA-205ENST00000399903 BRPF3Q9ULD4 1205 aa22.91■■□□□ 1.26
PTPRA-205ENST00000399903 NBPF8Q3BBV2 869 aa22.9■■□□□ 1.26
PTPRA-205ENST00000399903 PKD2Q13563 968 aa22.88■■□□□ 1.25
PTPRA-205ENST00000399903 TSPY4P0CV99 314 aa22.85■■□□□ 1.25
PTPRA-205ENST00000399903 TSPY10P0CW01 314 aa22.85■■□□□ 1.25
PTPRA-205ENST00000399903 GCC2Q8IWJ2 1684 aa22.84■■□□□ 1.25
PTPRA-205ENST00000399903 NCOA1Q15788 1441 aa22.84■■□□□ 1.25
PTPRA-205ENST00000399903 KDM5BQ9UGL1 1544 aa22.83■■□□□ 1.25
PTPRA-205ENST00000399903 NUDCQ9Y266 331 aa22.83■■□□□ 1.24
PTPRA-205ENST00000399903 DNMT1P26358 1616 aaKnown RBP22.82■■□□□ 1.24
PTPRA-205ENST00000399903 ANKRD30BQ9BXX2 1392 aa22.82■■□□□ 1.24
PTPRA-205ENST00000399903 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.82■■□□□ 1.248e-7■■■□□ 18.7
PTPRA-205ENST00000399903 CNTLNQ9NXG0 1405 aa22.82■■□□□ 1.24
PTPRA-205ENST00000399903 ROCK1Q13464 1354 aa22.81■■□□□ 1.24
PTPRA-205ENST00000399903 ERCC6L2Q5T890 1561 aa22.81■■□□□ 1.24
PTPRA-205ENST00000399903 KDM2AQ9Y2K7 1162 aa22.8■■□□□ 1.24
PTPRA-205ENST00000399903 SLC4A3P48751 1232 aa22.79■■□□□ 1.24
PTPRA-205ENST00000399903 NUP155O75694 1391 aa22.78■■□□□ 1.24
PTPRA-205ENST00000399903 ANKRD30AQ9BXX3 1397 aa22.77■■□□□ 1.24
PTPRA-205ENST00000399903 SKAP1Q86WV1 359 aa22.77■■□□□ 1.24
PTPRA-205ENST00000399903 ABCA8O94911 1581 aa22.77■■□□□ 1.24
PTPRA-205ENST00000399903 PDE4AP27815 886 aa22.76■■□□□ 1.23
PTPRA-205ENST00000399903 EXOC6Q8TAG9 804 aa22.75■■□□□ 1.23
PTPRA-205ENST00000399903 CHD1O14646 1710 aa22.75■■□□□ 1.23
PTPRA-205ENST00000399903 DAXXQ9UER7 740 aaPredicted RBP22.75■■□□□ 1.23
PTPRA-205ENST00000399903 ANKRD50Q9ULJ7 1429 aa22.75■■□□□ 1.23
PTPRA-205ENST00000399903 CCDC7Q96M83 1385 aa22.74■■□□□ 1.23
PTPRA-205ENST00000399903 TMC1Q8TDI8 760 aa22.72■■□□□ 1.23
PTPRA-205ENST00000399903 C9orf84Q5VXU9 1444 aa22.72■■□□□ 1.23
PTPRA-205ENST00000399903 PZPP20742 1482 aa22.72■■□□□ 1.23
PTPRA-205ENST00000399903 ABCC10Q5T3U5 1492 aa22.71■■□□□ 1.23
PTPRA-205ENST00000399903 PPM1GO15355 546 aaPredicted RBP22.7■■□□□ 1.22
PTPRA-205ENST00000399903 KIF7Q2M1P5 1343 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms