RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 SIN3AQ96ST3 1273 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 CCDC18Q5T9S5 1454 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 HTATSF1O43719 755 aaKnown RBP10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 MSNP26038 577 aaKnown RBP10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 PMFBP1Q8TBY8 1022 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 GBP4Q96PP9 640 aa10.63□□□□□ -0.71
SPTLC3-201ENST00000399002 GOLGA6L4A6NEF3 574 aa10.62□□□□□ -0.71
SPTLC3-201ENST00000399002 HSPA5P11021 654 aaKnown RBP10.62□□□□□ -0.71
SPTLC3-201ENST00000399002 DCAF11Q8TEB1 546 aa10.62□□□□□ -0.71
SPTLC3-201ENST00000399002 RGS3P49796 1198 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 KCNJ4P48050 445 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 FGD1P98174 961 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 RWDD1Q9H446 243 aaPredicted RBP10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 RAPGEF2Q9Y4G8 1499 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 RSPH4AQ5TD94 716 aa10.61□□□□□ -0.71
SPTLC3-201ENST00000399002 U2SURPO15042 1029 aaKnown RBP10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 HDAC5Q9UQL6 1122 aa10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 MROH2BQ7Z745 1585 aa10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 PDE3BQ13370 1112 aa10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 SYAP1Q96A49 352 aaPredicted RBP10.6□□□□□ -0.71
SPTLC3-201ENST00000399002 A0A0G2JS52 829 aa10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 RTF1Q92541 710 aaKnown RBP10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 CSPP1Q1MSJ5 1256 aa10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 UACAQ9BZF9 1416 aa10.59□□□□□ -0.71
SPTLC3-201ENST00000399002 ABCC8Q09428 1581 aa10.58□□□□□ -0.72
SPTLC3-201ENST00000399002 RAB3GAP2Q9H2M9 1393 aa10.58□□□□□ -0.72
SPTLC3-201ENST00000399002 NEUROD2Q15784 382 aa10.58□□□□□ -0.72
SPTLC3-201ENST00000399002 GOLGA2Q08379 1002 aa10.57□□□□□ -0.72
SPTLC3-201ENST00000399002 SRPK2P78362 688 aaKnown RBP10.56□□□□□ -0.72
SPTLC3-201ENST00000399002 TPM4P67936 248 aa10.56□□□□□ -0.72
SPTLC3-201ENST00000399002 RCAN3Q9UKA8 241 aa10.56□□□□□ -0.72
SPTLC3-201ENST00000399002 GPATCH3Q96I76 525 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 KIF15Q9NS87 1388 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 LMOD3Q0VAK6 560 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 KIAA1211Q6ZU35 1233 aa10.55□□□□□ -0.72
SPTLC3-201ENST00000399002 PKD2Q13563 968 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 B4GALNT3Q6L9W6 998 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 MPHOSPH9Q99550 1183 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 USP35Q9P2H5 1018 aa10.54□□□□□ -0.72
SPTLC3-201ENST00000399002 KIAA2012Q0VF49 1180 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 DRC7Q8IY82 874 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 CUX1P39880 1505 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 SPAG9O60271 1321 aaKnown RBP10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 HMMRO75330 724 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 PLCB2Q00722 1185 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 EFCAB2Q5VUJ9 269 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 WIZO95785 1651 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 CHMP4CQ96CF2 233 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 CCDC34Q96HJ3 373 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 NPHP1O15259 732 aa10.52□□□□□ -0.73
SPTLC3-201ENST00000399002 SMARCA4P51532 1647 aa10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 RBM19Q9Y4C8 960 aaKnown RBP10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 NUP155O75694 1391 aa10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 DEKP35659 375 aaKnown RBP10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 PHF14O94880 888 aa10.51□□□□□ -0.73
SPTLC3-201ENST00000399002 GNL2Q13823 731 aaKnown RBP10.5□□□□□ -0.73
SPTLC3-201ENST00000399002 TERF2IPQ9NYB0 399 aa10.5□□□□□ -0.73
SPTLC3-201ENST00000399002 NAP1L2Q9ULW6 460 aaPredicted RBP10.5□□□□□ -0.73
SPTLC3-201ENST00000399002 ITPRIPQ8IWB1 547 aa10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 MYBBP1AQ9BQG0 1328 aaKnown RBP10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 NLRP13Q86W25 1043 aa10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 NGEFQ8N5V2 710 aa10.48□□□□□ -0.73
SPTLC3-201ENST00000399002 IPO9Q96P70 1041 aaKnown RBP10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 DDX11L8A8MPP1 907 aa10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 STK31Q9BXU1 1019 aa10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 GOLGA6L3A6NEY3 463 aa10.47□□□□□ -0.73
SPTLC3-201ENST00000399002 CENPJQ9HC77 1338 aaPredicted RBP10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 LMOD2Q6P5Q4 547 aa10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 CADPSQ9ULU8 1353 aa10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 KIF3AQ9Y496 699 aa10.45□□□□□ -0.74
SPTLC3-201ENST00000399002 U2AF1L5P0DN76 240 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 U2AF1Q01081 240 aaKnown RBP eCLIP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 KANK4Q5T7N3 995 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 TPRNQ4KMQ1 711 aa10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 CENPQQ7L2Z9 268 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 SKOR2Q2VWA4 1001 aaPredicted RBP10.44□□□□□ -0.74
SPTLC3-201ENST00000399002 CCDC144AA2RUR9 1427 aa10.43□□□□□ -0.74
SPTLC3-201ENST00000399002 ST18O60284 1047 aa10.43□□□□□ -0.74
SPTLC3-201ENST00000399002 SMC4Q9NTJ3 1288 aa10.42□□□□□ -0.74
SPTLC3-201ENST00000399002 PLEKHG5O94827 1062 aa10.42□□□□□ -0.74
SPTLC3-201ENST00000399002 FHOD3Q2V2M9 1422 aa10.42□□□□□ -0.74
SPTLC3-201ENST00000399002 AAMPQ13685 434 aa10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 STAC3Q96MF2 364 aa10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 SENP3Q9H4L4 574 aaPredicted RBP10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 ROCK1Q13464 1354 aa10.41□□□□□ -0.74
SPTLC3-201ENST00000399002 ATAD2BQ9ULI0 1458 aa10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 DHX57Q6P158 1386 aaKnown RBP10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 E9PSI1 815 aa10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 TMX4Q9H1E5 349 aaPredicted RBP10.4□□□□□ -0.75
SPTLC3-201ENST00000399002 GOLGA6L1Q8N7Z2 621 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 EID1Q9Y6B2 187 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 ZBED9Q6R2W3 1325 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 ATP6V1DQ9Y5K8 247 aa10.39□□□□□ -0.75
SPTLC3-201ENST00000399002 HSP90B1P14625 803 aaKnown RBP10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 GGT6Q6P531 493 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 CGNL1Q0VF96 1302 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 KIF16BQ96L93 1317 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 MIA2Q96PC5 1412 aa10.38□□□□□ -0.75
SPTLC3-201ENST00000399002 MFAP1P55081 439 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms