RNA–Protein interactions for RNA: ENST00000398868.7

ATL3-201, Transcript of atlastin GTPase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ATL3, Length 7,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-201ENST00000398868 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.98□□□□□ -0.49
ATL3-201ENST00000398868 WWC1Q8IX03 1113 aa11.98□□□□□ -0.49
ATL3-201ENST00000398868 RTF1Q92541 710 aaKnown RBP11.98□□□□□ -0.49
ATL3-201ENST00000398868 DRC7Q8IY82 874 aa11.98□□□□□ -0.49
ATL3-201ENST00000398868 TNNT3P45378 269 aaPredicted RBP11.97□□□□□ -0.49
ATL3-201ENST00000398868 FBXO3Q9UK99 471 aa11.97□□□□□ -0.49
ATL3-201ENST00000398868 MORC1Q86VD1 984 aa11.96□□□□□ -0.49
ATL3-201ENST00000398868 CYB5RLQ6IPT4 315 aa11.96□□□□□ -0.5
ATL3-201ENST00000398868 NOL8Q76FK4 1167 aaKnown RBP11.95□□□□□ -0.5
ATL3-201ENST00000398868 CHAF1AQ13111 956 aaPredicted RBP11.95□□□□□ -0.5
ATL3-201ENST00000398868 SYTL4Q96C24 671 aaPredicted RBP11.94□□□□□ -0.5
ATL3-201ENST00000398868 RAD21O60216 631 aa11.94□□□□□ -0.5
ATL3-201ENST00000398868 TIMELESSQ9UNS1 1208 aa11.94□□□□□ -0.5
ATL3-201ENST00000398868 VSIG10Q8N0Z9 540 aa11.94□□□□□ -0.5
ATL3-201ENST00000398868 MEX3CQ5U5Q3 659 aaKnown RBP11.94□□□□□ -0.5
ATL3-201ENST00000398868 CREBRFQ8IUR6 639 aa11.93□□□□□ -0.5
ATL3-201ENST00000398868 ZNF428Q96B54 188 aa11.93□□□□□ -0.5
ATL3-201ENST00000398868 CCDC146Q8IYE0 955 aa11.93□□□□□ -0.5
ATL3-201ENST00000398868 MYO15BQ96JP2 1530 aa11.93□□□□□ -0.5
ATL3-201ENST00000398868 GNL2Q13823 731 aaKnown RBP11.93□□□□□ -0.5
ATL3-201ENST00000398868 SLC4A10Q6U841 1118 aa11.93□□□□□ -0.5
ATL3-201ENST00000398868 BAZ1BQ9UIG0 1483 aaKnown RBP11.92□□□□□ -0.5
ATL3-201ENST00000398868 SAMD1Q6SPF0 538 aaPredicted RBP11.92□□□□□ -0.5
ATL3-201ENST00000398868 PPP4R2Q9NY27 417 aa11.91□□□□□ -0.5
ATL3-201ENST00000398868 VPS53Q5VIR6 699 aa11.91□□□□□ -0.5
ATL3-201ENST00000398868 HNRNPMP52272 730 aaKnown RBP eCLIP11.91□□□□□ -0.5
ATL3-201ENST00000398868 TAF7LQ5H9L4 462 aa11.91□□□□□ -0.5
ATL3-201ENST00000398868 NECTIN2Q92692 538 aa11.9□□□□□ -0.5
ATL3-201ENST00000398868 FOXD4L1Q9NU39 408 aa11.9□□□□□ -0.5
ATL3-201ENST00000398868 FBXW7Q969H0 707 aa11.9□□□□□ -0.5
ATL3-201ENST00000398868 TMX4Q9H1E5 349 aaPredicted RBP11.9□□□□□ -0.5
ATL3-201ENST00000398868 RSF1Q96T23 1441 aaPredicted RBP11.9□□□□□ -0.5
ATL3-201ENST00000398868 CCNB3Q8WWL7 1395 aa11.9□□□□□ -0.5
ATL3-201ENST00000398868 NGDNQ8NEJ9 315 aaKnown RBP11.9□□□□□ -0.51
ATL3-201ENST00000398868 FRAT2O75474 233 aaPredicted RBP11.89□□□□□ -0.51
ATL3-201ENST00000398868 GTF2E1P29083 439 aaPredicted RBP11.89□□□□□ -0.51
ATL3-201ENST00000398868 GORABQ5T7V8 394 aa11.89□□□□□ -0.51
ATL3-201ENST00000398868 U2AF1L5P0DN76 240 aaPredicted RBP11.88□□□□□ -0.51
ATL3-201ENST00000398868 U2AF1Q01081 240 aaKnown RBP eCLIP11.88□□□□□ -0.51
ATL3-201ENST00000398868 CDCA8Q53HL2 280 aa11.88□□□□□ -0.51
ATL3-201ENST00000398868 L1TD1Q5T7N2 865 aaKnown RBP11.88□□□□□ -0.51
ATL3-201ENST00000398868 GOLGA6L6A8MZA4 724 aa11.88□□□□□ -0.51
ATL3-201ENST00000398868 EVA1CP58658 441 aa11.88□□□□□ -0.51
ATL3-201ENST00000398868 CEP162Q5TB80 1403 aa11.88□□□□□ -0.51
ATL3-201ENST00000398868 FOXD4L5Q5VV16 416 aaPredicted RBP11.88□□□□□ -0.51
ATL3-201ENST00000398868 FOXD4L4Q8WXT5 416 aaPredicted RBP11.88□□□□□ -0.51
ATL3-201ENST00000398868 SLKQ9H2G2 1235 aaPredicted RBP11.87□□□□□ -0.51
ATL3-201ENST00000398868 PPP1R1BQ9UD71 204 aaPredicted RBP11.87□□□□□ -0.51
ATL3-201ENST00000398868 KIF3BO15066 747 aa11.87□□□□□ -0.51
ATL3-201ENST00000398868 PNNQ9H307 717 aaKnown RBP11.87□□□□□ -0.51
ATL3-201ENST00000398868 KANK1Q14678 1352 aa11.87□□□□□ -0.51
ATL3-201ENST00000398868 TMF1P82094 1093 aa11.87□□□□□ -0.51
ATL3-201ENST00000398868 HSP90B1P14625 803 aaKnown RBP11.86□□□□□ -0.51
ATL3-201ENST00000398868 TOMM22Q9NS69 142 aa11.86□□□□□ -0.51
ATL3-201ENST00000398868 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.86□□□□□ -0.51
ATL3-201ENST00000398868 ELL2O00472 640 aaPredicted RBP11.86□□□□□ -0.51
ATL3-201ENST00000398868 PKD2Q13563 968 aa11.86□□□□□ -0.51
ATL3-201ENST00000398868 A0A0U1RQG5 324 aaPredicted RBP11.86□□□□□ -0.51
ATL3-201ENST00000398868 GOLGA6L4A6NEF3 574 aa11.86□□□□□ -0.51
ATL3-201ENST00000398868 ITPRIPQ8IWB1 547 aa11.85□□□□□ -0.51
ATL3-201ENST00000398868 RRP7AQ9Y3A4 280 aaKnown RBP11.85□□□□□ -0.51
ATL3-201ENST00000398868 CLUAP1Q96AJ1 413 aa11.85□□□□□ -0.51
ATL3-201ENST00000398868 HSCBQ8IWL3 235 aa11.85□□□□□ -0.51
ATL3-201ENST00000398868 HSP90AA2PQ14568 343 aaPredicted RBP11.84□□□□□ -0.51
ATL3-201ENST00000398868 NUTM2GQ5VZR2 741 aa11.84□□□□□ -0.51
ATL3-201ENST00000398868 TRAK1Q9UPV9 953 aa11.84□□□□□ -0.51
ATL3-201ENST00000398868 HDGFL2Q7Z4V5 671 aaPredicted RBP11.83□□□□□ -0.52
ATL3-201ENST00000398868 TRIM6-TRIM34B2RNG4 842 aa11.83□□□□□ -0.52
ATL3-201ENST00000398868 FOXD4L6Q3SYB3 417 aaPredicted RBP11.83□□□□□ -0.52
ATL3-201ENST00000398868 FOXD4L3Q6VB84 417 aaPredicted RBP11.83□□□□□ -0.52
ATL3-201ENST00000398868 AMPHP49418 695 aa11.83□□□□□ -0.52
ATL3-201ENST00000398868 HDGFP51858 240 aaKnown RBP11.83□□□□□ -0.52
ATL3-201ENST00000398868 CECR2Q9BXF3 1484 aa11.83□□□□□ -0.52
ATL3-201ENST00000398868 RB1CC1Q8TDY2 1594 aa11.83□□□□□ -0.52
ATL3-201ENST00000398868 USP35Q9P2H5 1018 aa11.82□□□□□ -0.52
ATL3-201ENST00000398868 WRNQ14191 1432 aaPredicted RBP eCLIP11.81□□□□□ -0.52
ATL3-201ENST00000398868 TCERG1O14776 1098 aaKnown RBP11.8□□□□□ -0.52
ATL3-201ENST00000398868 TDRD9Q8NDG6 1382 aaKnown RBP11.8□□□□□ -0.52
ATL3-201ENST00000398868 DCAF1Q9Y4B6 1507 aa11.8□□□□□ -0.52
ATL3-201ENST00000398868 TSHZ2Q9NRE2 1034 aa11.79□□□□□ -0.52
ATL3-201ENST00000398868 WASHC2CQ9Y4E1 1318 aa11.79□□□□□ -0.52
ATL3-201ENST00000398868 GOLGA3Q08378 1498 aa11.79□□□□□ -0.52
ATL3-201ENST00000398868 CUX2O14529 1486 aa11.79□□□□□ -0.52
ATL3-201ENST00000398868 KIF27Q86VH2 1401 aa11.78□□□□□ -0.52
ATL3-201ENST00000398868 EID1Q9Y6B2 187 aa11.78□□□□□ -0.52
ATL3-201ENST00000398868 BCL2L13Q9BXK5 485 aa11.78□□□□□ -0.52
ATL3-201ENST00000398868 HSPA5P11021 654 aaKnown RBP11.78□□□□□ -0.52
ATL3-201ENST00000398868 NOC3LQ8WTT2 800 aaKnown RBP11.78□□□□□ -0.52
ATL3-201ENST00000398868 NRDCO43847 1150 aa11.78□□□□□ -0.52
ATL3-201ENST00000398868 PATL2C9JE40 543 aaKnown RBP11.77□□□□□ -0.52
ATL3-201ENST00000398868 ROCK2O75116 1388 aaKnown RBP11.77□□□□□ -0.52
ATL3-201ENST00000398868 KDM4AO75164 1064 aa11.77□□□□□ -0.52
ATL3-201ENST00000398868 FAM177BA6PVY3 158 aa11.77□□□□□ -0.53
ATL3-201ENST00000398868 PTMSP20962 102 aa11.77□□□□□ -0.53
ATL3-201ENST00000398868 EIF2S2P20042 333 aaKnown RBP11.76□□□□□ -0.53
ATL3-201ENST00000398868 KANK4Q5T7N3 995 aaPredicted RBP11.76□□□□□ -0.53
ATL3-201ENST00000398868 KIAA1211Q6ZU35 1233 aa11.76□□□□□ -0.53
ATL3-201ENST00000398868 RASSF8Q8NHQ8 419 aa11.76□□□□□ -0.53
ATL3-201ENST00000398868 BCL11BQ9C0K0 894 aaPredicted RBP11.76□□□□□ -0.53
ATL3-201ENST00000398868 KIAA2012Q0VF49 1180 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms